Iron metabolism genes in Antarctic notothenioids: A review

Marine Genomics

Volumn 1, Issue 3-4, 2008, Pages 79-85

  Scudiero, Rosaria ^a   Trinchella, Francesca ^a   Parisi, Elio ^b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

Author keywords

Adaptive evolution; Antarctic fish; Iron metabolism; mRNA expression; Positive selection

Indexed keywords

NOTOTHENIOIDEI; VERTEBRATA;

EID: 63049138087     PISSN: 18747787     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.margen.2008.12.001     Document Type: Review

References (50)

1. Aisen P., Enns C., and Wessling-Resnick M. Chemistry and biology of eukaryotic iron metabolism. Int. J. Biochem. Cell Biol. 33 (2001) 940-959
2. Andrews N.C. Forging a field: the golden age of iron biology. Blood 112 (2008) 219-230
3. Andrews N.C., and Schmidt P.J. Iron homeostasis. Annu. Rev. Physiol. 69 (2007) 69-85
4. Arosio P., Yokota M., and Drysdale J.W. Structural and immunological relationships of isoferritins in normal and malignant cells. Cancer Res. 36 (1976) 1735-1739
5. Bargelloni L., Marcato S., and Patarnello T. Antarctic fish hemoglobins: evidence for adaptive evolution at subzero temperature. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 8670-8675
6. Barrier L., Page G., Fauconneau B., Juin F., and Tallineau C. Autoxidation of rat brain homogenate: evidence for spontaneous lipid peroxidation. Comparison with the characteristics of Fe2+- and ascorbic acid-stimulated lipid peroxidation. Free Radic. Res. 28 (1998) 411-422
7. Bielli P., and Calabrese L. Structure to function relationships in ceruloplasmin: a 'moonlighting' protein. Cell. Mol. Life Sci. 59 (2002) 1413-1427
8. Borrelli L., De Stasio R., Filosa S., Parisi E., Riggio M., Scudiero R., and Trinchella F. Evolutionary fate of duplicate genes encoding aspartic proteinases. Nothepsin case study. Gene 368 (2006) 101-109
9. Buettner-Janusch J. Evolution of serum protein polymorphisms. Annu. Rev. Genet. 4 (1970) 47-68
10. Carginale V., Trinchella F., Capasso C., Scudiero R., Riggio M., and Parisi E. Adaptive evolution and functional divergence of pepsin gene family. Gene 333 (2004) 81-90
11. Caskey J.H., Jones C., Miller Y.E., and Seligman P.A. Human ferritin gene is assigned to chromosome 19. Proc. Natl. Acad. Sci. U. S. A. 80 (1983) 482-486
12. Chen H., Waldbieser G.C., Rice C.D., Elibol B., Wolters W.R., and Hanson L.A. Isolation and characterization of channel catfish natural resistance associated macrophage protein gene. Dev. Comp. Immunol. 26 (2002) 517-531
13. Chen S.L., Wang Z.J., Xu M.Y., and Gui J.F. Molecular identification and expression analysis of natural resistance associated macrophage protein (Nramp) cDNA from Japanese flounder (Paralichthys olivaceus). Fish Shellfish Immunol. 20 (2006) 365-373
14. Cocca E., Ratnayake-Lecamwasam M., Parker S.K., Camardella L., Ciaramella M., di Prisco G., and Detrich III H.W. Genomic remnants of alpha-globin genes in the hemoglobinless Antarctic icefishes. Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 1817-1821
15. Creevey C., and McInerney J.O. An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene 300 (2002) 43-51
16. De Silva D.M., Askwith C.C., and Kaplan J. Molecular mechanisms of iron uptake in eukaryotes. Physiol. Rev. 76 (1996) 31-47
17. Donovan A., Brownlie A., Dorschner M.O., Zhou Y., Pratt S.J., Paw B.H., Phillips R.B., Thisse C., Thisse B., and Zon L.I. The zebrafish mutant gene chardonnay (cdy) encodes divalent metal transporter 1 (DMT1). Blood 100 (2002) 4655-4659
18. Eastman J.T. Antarctic Fish Biology: Evolution in a Unique Environment (1993), Academic Press, San Diego
19. Esteban M.A., Meseguer J., Garcia Ayala A., and Agulleiro B. Erythropoiesis and thrombopoiesis in the head-kidney of the sea bass (Dicentrarchus labrax L.): an ultrastructural study. Arch. Histol. Cytol. 52 (1989) 407-419
20. Frieden E. Caeruloplasmin: a multi-functional metalloprotein of vertebrate plasma. Ciba Found. Symp. 79 (1980) 93-124
21. Garrick M.D., and Dolan K.G. An expression system for a transporter of iron and other metals. Methods Mol. Biol. 196 (2002) 147-154
22. Garrick M.D., Dolan K.G., Horbinski C., Ghio A.J., Higgins D., Porubcin M., Moore E.G., Hainsworth L.N., Umbreit J.N., Conrad M.E., Feng L., Lis A., Roth J.A., Singleton S., and Garrick L.M. DMT1: a mammalian transporter for multiple metals. Biometals 16 (2003) 41-54
23. Giorgi A., Mignogna G., Bellapadrona G., Gattoni M., Chiaraluce R., Consalvi V., Chiancone E., and Stefanini S. The unusual co-assembly of H- and M-chains in the ferritin molecule from the Antarctic teleosts Trematomus bernacchii and Trematomus newnesi. Arch. Biochem. Biophys. 478 (2008) 69-74
24. Gu X. Statistical methods for testing functional divergence after gene duplication. Mol. Biol. Evol. 16 (1999) 1664-1674
25. Gunshin H., Fujiwara Y., Custodio A.O., Direnzo C., Robine S., and Andrews N.C. Slc11a2 is required for intestinal iron absorption and erythropoiesis but dispensable in placenta and liver. J. Clin. Invest. 115 (2005) 1258-1266
26. Hall D.R., Hadden J.M., Leonard G.A., Bailey S., Neu M., Winn M., and Lindley P.F. The crystal and molecular structures of diferric porcine and rabbit serum transferrins at resolutions of 2.15 and 2.60 Å, respectively. Acta Crystallogr., D Biol. Crystallogr. 58 (2002) 70-80
27. Harrison P.M., and Arosio P. The ferritins: molecular properties, iron storage function and cellular regulation. Biochim. Biophys. Acta 1275 (1996) 161-203
28. Kennett J.P. Marine Geology (1982), Prentice-Hall, Englewood Cliffs, New Jersey
29. Koorts A.M., and Viljoen M. Ferritin and ferritin isoforms I: structure-function relationships, synthesis, degradation and secretion. Arch. Physiol. Biochem. 113 (2007) 30-54
30. Lambert L.A., Perri H., and Meehan T.J. Evolution of duplications in the transferrin family of proteins. Comp. Biochem. Physiol., Part B Biochem. Mol. Biol. 140 (2005) 11-25
31. Lawson D.M., Treffry A., Artymiuk P.J., Harrison P.M., Yewdall S.J., Luzzago A., Cesareni G., Levi S., and Arosio P. Identification of the ferroxidase centre in ferritin. FEBS Lett. 254 (1989) 207-210
32. Lee J.Y., Tada T., Hirono I., and Aoki T. Molecular cloning and evolution of transferrin cDNAs in salmonids. Mol. Mar. Biol. Biotechnol. 7 (1998) 287-293
33. Levi S., Santambrogio P., Cozzi A., Rovida E., Corsi B., Tamborini E., Spada S., Albertini A., and Arosio P. The role of the L-chain in ferritin iron incorporation. Studies of homo and heteropolymers. J. Mol. Biol. 238 (1994) 649-654
34. Mignogna G., Chiaraluce R., Consalvi V., Cavallo S., Stefanini S., and Chiancone E. Ferritin from the spleen of the Antarctic teleost Trematomus bernacchii is an M-type homopolymer. Eur. J. Biochem. 269 (2002) 1600-1606
35. Nakamura K., and Go N. Function and molecular evolution of multicopper blue proteins. Cell. Mol. Life Sci. 62 (2005) 2050-2066
36. Nemeth E., Tuttle M.S., Powelson J., Vaughn M.B., Donovan A., Ward D.M., Ganz T., and Kaplan J. Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization. Science 306 (2004) 2090-2093
37. Nevo Y., and Nelson N. The NRAMP family of metal-ion transporters. Biochim. Biophys. Acta 1763 (2006) 609-620
38. Ota T., Nguyen T.A., Huang E., Detrich H.W., and Amemiya C.T. Positive Darwinian selection operating on the immunoglobulin heavy chain of Antarctic fishes. J. Exp. Zoolog. B Mol. Dev. Evol. 295 (2003) 45-58
39. Özgünes H., Beksac M.S., Durn S., and Kayakirilmaz K. Instant effect of induced abortion on serum ceruloplasmin activity, copper and zinc levels. Arch. Gynecol. 240 (1987) 21-25
40. Reilly C.A., and Aust S.D. Iron loading into ferritin by an intracellular ferroxidase. Arch. Biochem. Biophys. 359 (1998) 69-76
41. Sammarco M.C., Ditch S., Banerjee A., and Grabczyk E. Ferritin L and H subunits are differentially regulated on a post-transcriptional level. J. Biol. Chem. 283 (2008) 4578-4587
42. Sargent P.J., Farnaud S., and Evans R.W. Structure/function overview of proteins involved in iron storage and transport. Curr. Med. Chem. 12 (2005) 2683-2693
43. Scudiero R., Trinchella F., Riggio M., and Parisi E. Structure and expression of genes involved in transport and storage of iron in red-blooded and hemoglobin-less Antarctic notothenioids. Gene 397 (2007) 1-11
44. Sharp P. The molecular basis of copper and iron interactions. Proc. Nutr. Soc. 63 (2004) 563-569
45. Stefanini S., Cavallo S., Bozzi M., Mignogna P., Vecchini P., and Chiancone E. The H-type ferritin from the spleen of the Antarctic teleost Gymnodraco acuticeps. Proceedings of the Third Meeting on Antarctic Biology (1996), S. Margherita Ligure, Italy 69-74
46. Trinchella F., Parisi E., and Scudiero R. Evolutionary analysis of the transferrin gene in Antarctic Notothenioidei: a history of adaptive evolution and functional divergence. Mar. Genomics (2008) 10.1016/j.margen.2008.10.002
47. Welch S. Trasnferrin: The Iron Carrier (1992), CRC Press, Boca Raton, USA
48. Worwood M. Ferritin. Blood Rev. 4 (1990) 259-569
49. Xu Q., Cheng C.H., Hu P., Ye H., Chen Z., Cao L., Chen L., Shen Y., and Chen L. Adaptive evolution of hepcidin genes in Antarctic notothenioid fishes. Mol. Biol. Evol. 25 (2008) 1099-1112
50. Yang L., Zhou L., and Gui J.F. Molecular basis of transferrin polymorphism in goldfish (Carassius auratus). Genetica, 121 (2004) 303-313