메뉴 건너뛰기




Volumn 68, Issue 3, 2009, Pages 217-226

Gene conversion and positive selection driving the evolution of the caenorhabditis ssp. ZIM/HIM-8 protein family

Author keywords

Evolution; Gene conversion; Nematode; Positive selection; Zinc finger

Indexed keywords

ALGORITHMS; ANALYSIS OF VARIANCE; ANIMALS; BASE SEQUENCE; CAENORHABDITIS; CAENORHABDITIS ELEGANS PROTEINS; CELL CYCLE PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; DATABASES, PROTEIN; EVOLUTION, MOLECULAR; GENE CONVERSION; GENETIC VARIATION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SELECTION (GENETICS); SEQUENCE ALIGNMENT;

EID: 62949088813     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-009-9203-z     Document Type: Article
Times cited : (2)

References (41)
  • 1
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • M Anisimova JP Bielawski Z Yang 2001 Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution Mol Biol Evol 18 1585 1592
    • (2001) Mol Biol Evol , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 2
    • 44449101058 scopus 로고    scopus 로고
    • Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila
    • S Beisswanger W Stephan 2008 Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila Proc Natl Acad Sci USA 105 55447 55452
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 55447-55452
    • Beisswanger, S.1    Stephan, W.2
  • 3
    • 0037306139 scopus 로고    scopus 로고
    • Caenorhabditis elegans operons: Form and function
    • T Blumenthal KS Gleason 2003 Caenorhabditis elegans operons: form and function Nat Rev Genet 4 112 120
    • (2003) Nat Rev Genet , vol.4 , pp. 112-120
    • Blumenthal, T.1    Gleason, K.S.2
  • 6
    • 3543107924 scopus 로고    scopus 로고
    • A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution
    • S Cho SW Jin A Cohe RE Ellis 2004 A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution Genome Res 14 1207 1220
    • (2004) Genome Res , vol.14 , pp. 1207-1220
    • Cho, S.1    Jin, S.W.2    Cohe, A.3    Ellis, R.E.4
  • 7
    • 0029563023 scopus 로고
    • A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
    • JM Comeron 1995 A method for estimating the numbers of synonymous and nonsynonymous substitutions per site J Mol Evol 41 1152 1159
    • (1995) J Mol Evol , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 8
    • 0032826401 scopus 로고    scopus 로고
    • Detecting and characterizing gene conversions between multigene family members
    • G Drouin F Prat M Ell GDP Clarke 1999 Detecting and characterizing gene conversions between multigene family members Mol Biol Evol 16 1369 1390
    • (1999) Mol Biol Evol , vol.16 , pp. 1369-1390
    • Drouin, G.1    Prat, F.2    Ell, M.3    Clarke, G.D.P.4
  • 10
    • 9144228236 scopus 로고    scopus 로고
    • Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome
    • CC Englbrecht H Schoof S Bohm 2004 Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome BMC Genomics 5 39
    • (2004) BMC Genomics , vol.5 , pp. 39
    • Englbrecht, C.C.1    Schoof, H.2    Bohm, S.3
  • 11
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection
    • YX Fu 1997 Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection Genetics 147 915 925
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 12
    • 34547654174 scopus 로고    scopus 로고
    • Meiotic recombination in Caenorhabditis elegans
    • T Garcia-Muse SJ Boulton 2007 Meiotic recombination in Caenorhabditis elegans Chromosome Res 15 607 621
    • (2007) Chromosome Res , vol.15 , pp. 607-621
    • Garcia-Muse, T.1    Boulton, S.J.2
  • 13
    • 33744911365 scopus 로고    scopus 로고
    • A revised evolutionary history of the CYP1A subfamily: Gene duplication, gene conversion, and positive selection
    • HMH Goldstone JJ Stegeman 2006 A revised evolutionary history of the CYP1A subfamily: gene duplication, gene conversion, and positive selection J Mol Evol 62 708 717
    • (2006) J Mol Evol , vol.62 , pp. 708-717
    • Goldstone, H.M.H.1    Stegeman, J.J.2
  • 14
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in Dengue virus
    • EC Holmes M Worobey A Rambaut 1999 Phylogenetic evidence for recombination in Dengue virus Mol Biol Evol 16 405 409
    • (1999) Mol Biol Evol , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 15
    • 8444223551 scopus 로고    scopus 로고
    • Origins of chromosomal rearrangement hotspots in the human genome: Evidence from the AZFa deletion hotspots
    • ME Hurles D Willey L Matthews SS Hussain 2004 Origins of chromosomal rearrangement hotspots in the human genome: evidence from the AZFa deletion hotspots Genome Biol 5 R55
    • (2004) Genome Biol , vol.5 , pp. 55
    • Hurles, M.E.1    Willey, D.2    Matthews, L.3    Hussain, S.S.4
  • 16
    • 0041305918 scopus 로고    scopus 로고
    • A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes
    • H Innan 2003 A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes Proc Natl Acad Sci USA 100 8793 8798
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8793-8798
    • Innan, H.1
  • 17
    • 33644792802 scopus 로고    scopus 로고
    • Improvement in the accuracy of multiple sequence alignment program MAFFT
    • K Katoh K Kuma T Miyata H Toh 2005 Improvement in the accuracy of multiple sequence alignment program MAFFT Genome Inform 16 22 33
    • (2005) Genome Inform , vol.16 , pp. 22-33
    • Katoh, K.1    Kuma, K.2    Miyata, T.3    Toh, H.4
  • 20
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 21
    • 33847333237 scopus 로고    scopus 로고
    • Meiotic pairing: A place to hook up
    • KS McKim 2007 Meiotic pairing: a place to hook up Curr Biol 17 R165 R168
    • (2007) Curr Biol , vol.17
    • McKim, K.S.1
  • 22
    • 37249092429 scopus 로고    scopus 로고
    • Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula
    • SD Mita J Ronfort HI McKhann C Poncet RE Malki T Bataillon 2007 Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula Genetics 177 2123 2133
    • (2007) Genetics , vol.177 , pp. 2123-2133
    • Mita, S.D.1    Ronfort, J.2    McKhann, H.I.3    Poncet, C.4    Malki, R.E.5    Bataillon, T.6
  • 23
    • 0007663470 scopus 로고
    • Nucleotide sequence divergence and functional constraint in mRNA evolution
    • T Miyata T Yasunaga T Nishida 1980 Nucleotide sequence divergence and functional constraint in mRNA evolution Proc Natl Acad Sci USA 77 7328 7332
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 7328-7332
    • Miyata, T.1    Yasunaga, T.2    Nishida, T.3
  • 24
    • 27844441222 scopus 로고    scopus 로고
    • Genetic diversity and the evolutionary history of plant immunity genes in two species of Zea
    • DA Moeller P Tiffin 2005 Genetic diversity and the evolutionary history of plant immunity genes in two species of Zea Mol Biol Evol 22 2480 2490
    • (2005) Mol Biol Evol , vol.22 , pp. 2480-2490
    • Moeller, D.A.1    Tiffin, P.2
  • 25
    • 27844526579 scopus 로고    scopus 로고
    • Gene conversion and the evolution of three Leucine-rich repeat gene families in Arabidopsis thaliana
    • M Mondragon-Palomino BS Gaut 2005 Gene conversion and the evolution of three Leucine-rich repeat gene families in Arabidopsis thaliana Mol Biol Evol 22 2444 2456
    • (2005) Mol Biol Evol , vol.22 , pp. 2444-2456
    • Mondragon-Palomino, M.1    Gaut, B.S.2
  • 26
    • 33646195440 scopus 로고    scopus 로고
    • C. elegans HIM-8 functions outside of meiosis to antagonize EGL-13 Sox protein function
    • BL Nelms W Hanna-Rose 2006 C. elegans HIM-8 functions outside of meiosis to antagonize EGL-13 Sox protein function Dev Biol 293 392 402
    • (2006) Dev Biol , vol.293 , pp. 392-402
    • Nelms, B.L.1    Hanna-Rose, W.2
  • 27
    • 1542316918 scopus 로고    scopus 로고
    • Gene conversion and the evolution of protocadherin gene cluster diversity
    • JP Noonan J Grimwood J Schmutz M Dickson RM Myers 2004 Gene conversion and the evolution of protocadherin gene cluster diversity Genome Res 14 354 366
    • (2004) Genome Res , vol.14 , pp. 354-366
    • Noonan, J.P.1    Grimwood, J.2    Schmutz, J.3    Dickson, M.4    Myers, R.M.5
  • 28
    • 0030809908 scopus 로고    scopus 로고
    • Role of gene conversion in generating polymorphisms at major histocompatibility complex loci
    • T Ohta 1997 Role of gene conversion in generating polymorphisms at major histocompatibility complex loci Hereditas 127 97 103
    • (1997) Hereditas , vol.127 , pp. 97-103
    • Ohta, T.1
  • 29
    • 33751317226 scopus 로고    scopus 로고
    • A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans
    • CM Phillips AF Dernburg 2006 A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans Dev Cell 11 817 829
    • (2006) Dev Cell , vol.11 , pp. 817-829
    • Phillips, C.M.1    Dernburg, A.F.2
  • 30
  • 31
    • 0036097812 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Empirical data
    • D Posada 2002 Evaluation of methods for detecting recombination from DNA sequences: empirical data Mol Biol Evol 19 708 717
    • (2002) Mol Biol Evol , vol.19 , pp. 708-717
    • Posada, D.1
  • 33
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • S Sawyer 1989 Statistical tests for detecting gene conversion Mol Biol Evol 6 526 538
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 34
    • 40549145850 scopus 로고    scopus 로고
    • Patterns of nucleotide sequence variation in ICAMI and TNF genes in twelve ethnic groups of India: Roles of demographic history and natural selection
    • S Sengupta S Farheen N Mukherjee PP Majumder 2007 Patterns of nucleotide sequence variation in ICAMI and TNF genes in twelve ethnic groups of India: roles of demographic history and natural selection J Genet 86 225 239
    • (2007) J Genet , vol.86 , pp. 225-239
    • Sengupta, S.1    Farheen, S.2    Mukherjee, N.3    Majumder, P.P.4
  • 35
    • 0038141095 scopus 로고    scopus 로고
    • Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters
    • M Shannon AT Hamilton L Gordon E Branscomb L Stubbs 2003 Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters Genome Res 13 1097 1110
    • (2003) Genome Res , vol.13 , pp. 1097-1110
    • Shannon, M.1    Hamilton, A.T.2    Gordon, L.3    Branscomb, E.4    Stubbs, L.5
  • 36
    • 35549006667 scopus 로고    scopus 로고
    • Modulation of Caenorhabditis elegans transcription factor activity by HIM-8 and the related zinc-finger ZIM proteins
    • H Sun BL Nelms SF Sleiman HM Chamberlin W Hanna-Rose 2007 Modulation of Caenorhabditis elegans transcription factor activity by HIM-8 and the related zinc-finger ZIM proteins Genetics 177 1221 1226
    • (2007) Genetics , vol.177 , pp. 1221-1226
    • Sun, H.1    Nelms, B.L.2    Sleiman, S.F.3    Chamberlin, H.M.4    Hanna-Rose, W.5
  • 37
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • F Tajima 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 123 585 595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 38
    • 34547803197 scopus 로고    scopus 로고
    • PAML4: A program package for phylogenetic analysis by maximum likelihood
    • Z Yang 2007 PAML4: A program package for phylogenetic analysis by maximum likelihood Mol Biol Evol 24 1586 1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 39
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Z Yang R Nielsen N Goldman AM Pedersen 2000 Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 431 449
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 40
    • 43049123084 scopus 로고    scopus 로고
    • Adaptive evolution and frequent gene conversion in the brain expressed X-linked gene family in mammals
    • L Zhang 2008 Adaptive evolution and frequent gene conversion in the brain expressed X-linked gene family in mammals Biochem Genet 46 293 311
    • (2008) Biochem Genet , vol.46 , pp. 293-311
    • Zhang, L.1
  • 41
    • 0032036374 scopus 로고    scopus 로고
    • Frequent gene conversion between human red and green opsin genes
    • Z Zhao D Hewett-Emmett WH Li 1998 Frequent gene conversion between human red and green opsin genes J Mol Evol 46 494 496
    • (1998) J Mol Evol , vol.46 , pp. 494-496
    • Zhao, Z.1    Hewett-Emmett, D.2    Li, W.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.