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Volumn 4, Issue 2, 2003, Pages 112-120

Caenorhabditis elegans operons: Form and function

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPHILIN;

EID: 0037306139     PISSN: 14710056     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (103)

References (39)
  • 1
    • 0037162695 scopus 로고    scopus 로고
    • Shared strategies in gene organization among prokaryotes and eukaryotes
    • Lawrence, J. G. Shared strategies in gene organization among prokaryotes and eukaryotes. Cell 110, 407-413 (2002).
    • (2002) Cell , vol.110 , pp. 407-413
    • Lawrence, J.G.1
  • 2
    • 0028983409 scopus 로고
    • Transcription in archaea: Similarity to that in eucarya
    • Langer, D. et al. Transcription in archaea: similarity to that in eucarya. Proc. Natl Acad Sci. USA 92, 5768-5772 (1995). One of several papers that report the same operon architecture in bacteria and archaea, especially for operons that contain components of the gene expression machinery.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5768-5772
    • Langer, D.1
  • 4
    • 0027166660 scopus 로고
    • Operons in C. elegans: Polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions
    • Spieth, J. et al. Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions. Cell 73, 521-532 (1993). The original report of operons in the C. elegans genome.
    • (1993) Cell , vol.73 , pp. 521-532
    • Spieth, J.1
  • 5
    • 0004282618 scopus 로고    scopus 로고
    • Riddle, D. et al. Cold Spring Harbor Laboratory Press, New York
    • Blumenthal, T. & Steward, K. in C. elegans II (eds Riddle, D. et al.) 117-145 (Cold Spring Harbor Laboratory Press, New York, 1997).
    • (1997) C. Elegans II , pp. 117-145
    • Blumenthal, T.1    Steward, K.2
  • 6
    • 0028965514 scopus 로고
    • Trans-splicing and polycistronic transcription in Caenorhabditis elegans
    • Blumenthal, T. Trans-splicing and polycistronic transcription in Caenorhabditis elegans. Trends Genet. 11, 132-136 (1995).
    • (1995) Trends Genet. , vol.11 , pp. 132-136
    • Blumenthal, T.1
  • 7
    • 0030475685 scopus 로고    scopus 로고
    • Gene structure and organization in Caenorhabditis elegans
    • Blumenthal, T. & Spieth, J. Gene structure and organization in Caenorhabditis elegans. Curr. Opin. Genet. Dev. 6, 692-698 (1996).
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 692-698
    • Blumenthal, T.1    Spieth, J.2
  • 8
    • 0035143008 scopus 로고    scopus 로고
    • Intercistronic region required for polycistronic pre-mRNA processing in Caenorhabditis elegans
    • Huang, T. et al. Intercistronic region required for polycistronic pre-mRNA processing in Caenorhabditis elegans. Mol. Cell. Biol. 21, 1111-1120 (2001).
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 1111-1120
    • Huang, T.1
  • 9
    • 0022981733 scopus 로고
    • Evidence for trans splicing in trypanosomes
    • Sutton, R. E. & Boothroyd, J. C. Evidence for trans splicing in trypanosomes. Cell 47, 527-535 (1986).
    • (1986) Cell , vol.47 , pp. 527-535
    • Sutton, R.E.1    Boothroyd, J.C.2
  • 10
    • 0022975688 scopus 로고
    • Identification of a novel Y branch structure as an intermediate in trypanosome mRNA processing: Evidence for trans splicing
    • Murphy, W. J., Watkins, K. P. & Agabian, N. Identification of a novel Y branch structure as an intermediate in trypanosome mRNA processing: evidence for trans splicing. Cell 47, 517-525 (1986).
    • (1986) Cell , vol.47 , pp. 517-525
    • Murphy, W.J.1    Watkins, K.P.2    Agabian, N.3
  • 11
    • 0030842141 scopus 로고    scopus 로고
    • Surprising diversity and distribution of spliced leader RNAs in flatworms
    • Davis, R. E. Surprising diversity and distribution of spliced leader RNAs in flatworms. Mol Biochem. Parasitol. 87, 29-48 (1997).
    • (1997) Mol Biochem. Parasitol. , vol.87 , pp. 29-48
    • Davis, R.E.1
  • 12
    • 0035826943 scopus 로고    scopus 로고
    • Trans-spliced leader addition to mRNAs in a cnidarian
    • Stover, N. A. & Steele, R. E. Trans-spliced leader addition to mRNAs in a cnidarian. Proc. NatfAcad. Sci. USA 98, 5693-5698 (2001).
    • (2001) Proc. NatfAcad. Sci. USA , vol.98 , pp. 5693-5698
    • Stover, N.A.1    Steele, R.E.2
  • 13
    • 0035241992 scopus 로고    scopus 로고
    • mRNA 5′-leader trans-splicing in the chordates
    • Vandenberghe, A. E., Meedel, T. H. & Hastings, K. E. mRNA 5′-leader trans-splicing in the chordates. Genes Dev. 15, 294-303 (2001).
    • (2001) Genes Dev. , vol.15 , pp. 294-303
    • Vandenberghe, A.E.1    Meedel, T.H.2    Hastings, K.E.3
  • 14
    • 0027451110 scopus 로고
    • Trans-splicing of nematode premessenger RNA
    • Nilsen, T W. Trans-splicing of nematode premessenger RNA. Annu. Rev. Microbiol 47, 413-440 (1993).
    • (1993) Annu. Rev. Microbiol. , vol.47 , pp. 413-440
    • Nilsen, T.W.1
  • 15
    • 0037030722 scopus 로고    scopus 로고
    • New components of the spliced leader RNP required for nematode trans-splicing
    • Denker, J. A. et al. New components of the spliced leader RNP required for nematode trans-splicing. Nature 417, 667-670 (2002).
    • (2002) Nature , vol.417 , pp. 667-670
    • Denker, J.A.1
  • 16
    • 0035576933 scopus 로고    scopus 로고
    • Evolutionary origin of SL-addition trans-splicing: Still an enigma
    • Nilsen, T. W. Evolutionary origin of SL-addition trans-splicing: still an enigma. Trends Genet. 17, 678-680 (2001).
    • (2001) Trends Genet. , vol.17 , pp. 678-680
    • Nilsen, T.W.1
  • 17
    • 0028033820 scopus 로고
    • Operons as a common form of chromosomal organization in C. elegens
    • Zorio, D. A. et al. Operons as a common form of chromosomal organization in C. elegens. Nature 372, 270-272 (1994).
    • (1994) Nature , vol.372 , pp. 270-272
    • Zorio, D.A.1
  • 18
    • 0037142086 scopus 로고    scopus 로고
    • A global analysis of Caenorhabditis elegans operons
    • Blumenthal, T. et al. A global analysis of Caenorhabditis elegans operons. Nature 417, 851-854 (2002). The paper presents a microarray and cDNA analysis of the C. elegans genome to identify most of the operons. It also reports the co-regulation of functionally related genes through their presence in the same operon.
    • (2002) Nature , vol.417 , pp. 851-854
    • Blumenthal, T.1
  • 19
    • 0037448540 scopus 로고    scopus 로고
    • Systematic functional analysis of the C. elegans genome using RNAi
    • Kamath, R. S. et al. Systematic functional analysis of the C. elegans genome using RNAi. Nature 421, 231-237 (2003). The authors analyse most of the C. elegans genes by RNAi, and divide them into functional categories on the basis of their knockdown phenotypes.
    • (2003) Nature , vol.421 , pp. 231-237
    • Kamath, R.S.1
  • 20
    • 0030886016 scopus 로고    scopus 로고
    • Operons and SL2 trans-splicing exist in nematodes outside the genus Caenorhabdrtis
    • Evans, D. et al. Operons and SL2 trans-splicing exist in nematodes outside the genus Caenorhabdrtis. Proc. Natl Acad. Sci. USA 94, 9751-9756 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9751-9756
    • Evans, D.1
  • 21
    • 0023680123 scopus 로고
    • Polycistronic transcripts in trypanosomes and their accumulation during heat shock: Evidence for a precursor role in mRNA synthesis
    • Muhich, M. L. & Boothroyd, J. C. Polycistronic transcripts in trypanosomes and their accumulation during heat shock: evidence for a precursor role in mRNA synthesis Mol. Cell. Biol. 8, 3837-3846 (1988).
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 3837-3846
    • Muhich, M.L.1    Boothroyd, J.C.2
  • 22
    • 0030875737 scopus 로고    scopus 로고
    • Gene linkage and steady state RNAs suggest trans-splicing may be associated with a polycistronic transcript in Schistosoma Mansoni
    • Davis, R. E. & Hodgson, S. Gene linkage and steady state RNAs suggest trans-splicing may be associated with a polycistronic transcript in Schistosoma Mansoni. Mol. Biochem. Parasitol. 89, 25-39 (1997).
    • (1997) Mol. Biochem. Parasitol. , vol.89 , pp. 25-39
    • Davis, R.E.1    Hodgson, S.2
  • 23
    • 0032103829 scopus 로고    scopus 로고
    • Gene clusters and polycistronic transcription in eukaryotes
    • Blumenthal, T. Gene clusters and polycistronic transcription in eukaryotes. Bioessays 20, 480-487 (1998).
    • (1998) Bioessays , vol.20 , pp. 480-487
    • Blumenthal, T.1
  • 24
    • 0032921851 scopus 로고    scopus 로고
    • lir-2, lir-1 and lin-26 encode a new class of zinc-finger proteins and are organized in two overlapping operons both in Caenorhabditis elegans and in Caenorhabditis briggsae
    • Dufourcq, P. et al. lir-2, lir-1 and lin-26 encode a new class of zinc-finger proteins and are organized in two overlapping operons both in Caenorhabditis elegans and in Caenorhabditis briggsae. Genetics 152, 221-235 (1999).
    • (1999) Genetics , vol.152 , pp. 221-235
    • Dufourcq, P.1
  • 25
    • 0032587919 scopus 로고    scopus 로고
    • U2AF35 is encoded by an essential gene clustered in an operon with RRM/cyclophilin in Caenorhabditis elegans
    • Zorio, D. A. & Blumenthal, T. U2AF35 is encoded by an essential gene clustered in an operon with RRM/cyclophilin in Caenorhabditis elegans. RNA 5, 487-494 (1999).
    • (1999) RNA , vol.5 , pp. 487-494
    • Zorio, D.A.1    Blumenthal, T.2
  • 26
    • 0032796427 scopus 로고    scopus 로고
    • Splicing factor SF1 from Drosophila and Caenorhabditis: Presence of an N-terminal RS domain and requirement for viability
    • Mazroui, R., Puoti, A. & Kramer, A. Splicing factor SF1 from Drosophila and Caenorhabditis: presence of an N-terminal RS domain and requirement for viability. RNA 5, 1615-1631 (1999).
    • (1999) RNA , vol.5 , pp. 1615-1631
    • Mazroui, R.1    Puoti, A.2    Kramer, A.3
  • 27
    • 0037068447 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of the human spliceosome
    • Zhou, Z. et al. Comprehensive proteomic analysis of the human spliceosome. Nature 419, 182-185 (2002).
    • (2002) Nature , vol.419 , pp. 182-185
    • Zhou, Z.1
  • 28
    • 0036242097 scopus 로고    scopus 로고
    • Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis
    • Jurica, M. S. et al. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. RNA 8, 426-439 (2002).
    • (2002) RNA , vol.8 , pp. 426-439
    • Jurica, M.S.1
  • 29
    • 0036674269 scopus 로고    scopus 로고
    • Large-scale proteomic analysis of the human spliceosome
    • Rappsilber, J. et al. Large-scale proteomic analysis of the human spliceosome. Genome Res. 12, 1231-1245 (2002).
    • (2002) Genome Res. , vol.12 , pp. 1231-1245
    • Rappsilber, J.1
  • 30
    • 0017219961 scopus 로고
    • Organization of bacterial genes for ribosomal components: Studies using novel approaches
    • Nomura, M. Organization of bacterial genes for ribosomal components: studies using novel approaches. Cell 9, 633-644 (1976). One of several papers reporting the co-expression of genes that encode RNA polymerase subunits and ribosomal proteins in the same bacterial operons.
    • (1976) Cell , vol.9 , pp. 633-644
    • Nomura, M.1
  • 31
    • 0032416725 scopus 로고    scopus 로고
    • Two functionally dependent acetylcholine subunits are encoded in a single Caenorhabditis elegans operon
    • Treinin, M. et al. Two functionally dependent acetylcholine subunits are encoded in a single Caenorhabditis elegans operon. Proc. Natl Acad. Sci. USA 95, 15492-15495 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 15492-15495
    • Treinin, M.1
  • 32
    • 0027935308 scopus 로고
    • The Caenorhabditis efegans locus lin-15, a negative regulator of a tyrosine kinase signaling pathway, encodes two different proteins
    • Clark, S. G., Lu, X. & Horvitz, H. R. The Caenorhabditis efegans locus lin-15, a negative regulator of a tyrosine kinase signaling pathway, encodes two different proteins. Genetics 137, 987-997 (1994).
    • (1994) Genetics , vol.137 , pp. 987-997
    • Clark, S.G.1    Lu, X.2    Horvitz, H.R.3
  • 33
    • 0028340308 scopus 로고
    • The lin-15 locus encodes two negative regulators of Caenorhabditis elegans vulval development
    • Huang, L. S., Tzou, P. & Sternberg, P. W. The lin-15 locus encodes two negative regulators of Caenorhabditis elegans vulval development. Mol. Biol. Cell 5, 395-411 (1994).
    • (1994) Mol. Biol. Cell , vol.5 , pp. 395-411
    • Huang, L.S.1    Tzou, P.2    Sternberg, P.W.3
  • 34
    • 0031441989 scopus 로고    scopus 로고
    • Cyclophilin and protein disulfide isomerase genes are co-transcribed in a functionally related manner in Caenorhabditis elegans
    • Page, A. P. Cyclophilin and protein disulfide isomerase genes are co-transcribed in a functionally related manner in Caenorhabditis elegans. DNA Cell Biol. 16, 1335-1343 (1997).
    • (1997) DNA Cell Biol. , vol.16 , pp. 1335-1343
    • Page, A.P.1
  • 35
    • 0037315946 scopus 로고    scopus 로고
    • Co-expression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes
    • in the press
    • Lercher, M. J., Blumenthal, T. & Hurst, L. D. Co-expression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes. Genome Res. (in the press).
    • Genome Res.
    • Lercher, M.J.1    Blumenthal, T.2    Hurst, L.D.3
  • 36
    • 0034721722 scopus 로고    scopus 로고
    • Genomic analysis of gene expression in C. elegans
    • Hill, A. A. et al. Genomic analysis of gene expression in C. elegans. Science 290, 809-812 (2000).
    • (2000) Science , vol.290 , pp. 809-812
    • Hill, A.A.1
  • 37
    • 0037040189 scopus 로고    scopus 로고
    • ICln ion channel splice vanants in Caenorhabditis elegans: Voltage dependence and interaction with an operon partner protein
    • Furst, J. et al. ICln ion channel splice vanants in Caenorhabditis elegans: voltage dependence and interaction with an operon partner protein. J. Biol. Chem. 277, 4435-4445 (2002). The first paper to use a C. elegans operon as a gene finding tool. It shows that one protein in the operon modifies the activity of an ion channel encoded in the operon when the two are co-expressed in a cell culture.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4435-4445
    • Furst, J.1
  • 38
    • 0036844140 scopus 로고    scopus 로고
    • Widespread organisation of C. elegans genes into operons: Fact or function?
    • Nimmo, R. & Woollard, A. Widespread organisation of C. elegans genes into operons: fact or function? Bioessays 24, 983-987 (2002).
    • (2002) Bioessays , vol.24 , pp. 983-987
    • Nimmo, R.1    Woollard, A.2
  • 39
    • 0037039159 scopus 로고    scopus 로고
    • Directed proteomic analysis of the human nucleolus
    • Andersen, J. S. et al. Directed proteomic analysis of the human nucleolus. Curr. Biol. 12, 1-11 (2002).
    • (2002) Curr. Biol. , vol.12 , pp. 1-11
    • Andersen, J.S.1


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