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Volumn 63, Issue 4, 2009, Pages 950-958

The effects of population bottlenecks on clonal interference, and the adaptation effective population size

Author keywords

Adaptation; Effective population size; Experimental evolution; Population genetics

Indexed keywords

ADAPTATION; EVOLUTIONARY BIOLOGY; MUTATION; POPULATION BOTTLENECK; POPULATION GENETICS; POPULATION SIZE; SIMULATION;

EID: 62749133519     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00595.x     Document Type: Article
Times cited : (32)

References (42)
  • 3
    • 3543125439 scopus 로고    scopus 로고
    • Adaptive evolution of asexual populations under Muller's ratchet
    • Bachtrog, D., and I. Gordo. 2004. Adaptive evolution of asexual populations under Muller's ratchet. Evolution 58 : 1403 1413.
    • (2004) Evolution , vol.58 , pp. 1403-1413
    • Bachtrog, D.1    Gordo, I.2
  • 4
    • 0029040245 scopus 로고
    • Linkage and limits to natural selection
    • Barton, N. H. 1995. Linkage and limits to natural selection. Genetics 140 : 821 841.
    • (1995) Genetics , vol.140 , pp. 821-841
    • Barton, N.H.1
  • 5
    • 52049126703 scopus 로고    scopus 로고
    • The stochastic edge in adaptive evolution
    • Brunet, E., I. M. Rouzine, and C. O. Wilke. 2008. The stochastic edge in adaptive evolution. Genetics 179 : 603 620.
    • (2008) Genetics , vol.179 , pp. 603-620
    • Brunet, E.1    Rouzine, I.M.2    Wilke, C.O.3
  • 6
    • 2542475523 scopus 로고    scopus 로고
    • Mutational effects on the clonal interference phenomenon
    • Campos, P. R. A., and V. M. de Oliveira. 2004. Mutational effects on the clonal interference phenomenon. Evolution 58 : 932 937.
    • (2004) Evolution , vol.58 , pp. 932-937
    • Campos, P.R.A.1    De Oliveira, V.M.2
  • 7
    • 0028222304 scopus 로고
    • The effect of background selection against deleterious mutations on weakly selected sites, linked variants
    • Charlesworth, B. 1994. The effect of background selection against deleterious mutations on weakly selected sites, linked variants. Genet. Res. 63 : 213 227.
    • (1994) Genet. Res. , vol.63 , pp. 213-227
    • Charlesworth, B.1
  • 8
    • 2342560569 scopus 로고    scopus 로고
    • Dynamics of fixation of advantageous mutations
    • de Oliveira, V. M., and P. R. A. Campos. 2004. Dynamics of fixation of advantageous mutations. Physica A 337 : 546 554.
    • (2004) Physica a , vol.337 , pp. 546-554
    • De Oliveira, V.M.1    Campos, P.R.A.2
  • 9
    • 33847256353 scopus 로고    scopus 로고
    • The speed of evolution and maintenance of variation in asexual populations
    • Desai, M. M., D. S. Fisher, and A. W. Murray. 2007. The speed of evolution and maintenance of variation in asexual populations. Curr. Biol. 17 : 385 394.
    • (2007) Curr. Biol. , vol.17 , pp. 385-394
    • Desai, M.M.1    Fisher, D.S.2    Murray, A.W.3
  • 10
    • 34447546660 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Eyre-Walker, A., and P. D. Keightley. 2007. The fate of competing beneficial mutations in an asexual population. Nat. Rev. Genet. 8 : 610 618.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 11
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein, J. 1974. The evolutionary advantage of recombination. Genetics 78 : 737 756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 13
    • 62749117503 scopus 로고
    • Theoretical population genetics
    • London.
    • Gale, J. S. 1990. Theoretical population genetics. Unwin Hyman, London.
    • (1990) Unwin Hyman
    • Gale, J.S.1
  • 14
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J., and R. E. Lenski. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 102/103 : 127 144.
    • (1998) Genetica , vol.102-103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 15
    • 33749420389 scopus 로고    scopus 로고
    • Genomic convergence toward diploidy in Saccharomyces cerevisiae
    • Gerstein, A. C., H. J. E. Chun, Grant, A., and S. Otto. 2006. Genomic convergence toward diploidy in Saccharomyces cerevisiae. PLOS Genet. 2 : 1396 1401.
    • (2006) PLOS Genet. , vol.2 , pp. 1396-1401
    • Gerstein, A.C.1    Chun, H.J.E.2    Grant, A.3    Otto, S.4
  • 16
    • 0020740521 scopus 로고
    • A simple stochastic gene substitution model
    • Gillespie, J. H. 1983. A simple stochastic gene substitution model. Theor. Pop. Biol. 23 : 202 215.
    • (1983) Theor. Pop. Biol. , vol.23 , pp. 202-215
    • Gillespie, J.H.1
  • 17
    • 0001359641 scopus 로고
    • Molecular evolution over the mutational landscape
    • Gillespie, J. H. 1984. Molecular evolution over the mutational landscape. Evolution 38 : 1116 1129.
    • (1984) Evolution , vol.38 , pp. 1116-1129
    • Gillespie, J.H.1
  • 18
    • 37649029925 scopus 로고    scopus 로고
    • Nonequilibrium model for estimating parameters of deleterious mutations
    • Gordo, I., and F. Dionisio. 2005. Nonequilibrium model for estimating parameters of deleterious mutations. Phys. Rev. E. 71 : 031907-1 131907-4.
    • (2005) Phys. Rev. E. , vol.71
    • Gordo, I.1    Dionisio, F.2
  • 19
    • 33746140082 scopus 로고    scopus 로고
    • Adaptive evolution in a spatially structured asexual population
    • Gordo, I., and P. R. A. Campos. 2006. Adaptive evolution in a spatially structured asexual population. Genetica 127 : 217 229.
    • (2006) Genetica , vol.127 , pp. 217-229
    • Gordo, I.1    Campos, P.R.A.2
  • 20
    • 34548035443 scopus 로고    scopus 로고
    • Spatial structure inhibits the rate of invasion of beneficial mutations in asexual populations
    • Habets, M. G., T. Czaran, Hoekstra, R. F., and J. A. de Visser. 2007. Spatial structure inhibits the rate of invasion of beneficial mutations in asexual populations. Proc. Biol. Sci. 274 : 2139 2143.
    • (2007) Proc. Biol. Sci. , vol.274 , pp. 2139-2143
    • Habets, M.G.1    Czaran, T.2    Hoekstra, R.F.3    De Visser, J.A.4
  • 21
    • 0018029597 scopus 로고
    • The accumulation of deleterious genes in a population: Muller's ratchet
    • Haigh, J. 1978. The accumulation of deleterious genes in a population: Muller's ratchet. Theor. Popul. Biol. 14 : 251 267.
    • (1978) Theor. Popul. Biol. , vol.14 , pp. 251-267
    • Haigh, J.1
  • 22
    • 34249014299 scopus 로고    scopus 로고
    • The role of pleiotropy in the maintenance of sex in yeast
    • Hill, J. A., and S. P. Otto. 2007. The role of pleiotropy in the maintenance of sex in yeast. Genetics 175 : 1419 1427.
    • (2007) Genetics , vol.175 , pp. 1419-1427
    • Hill, J.A.1    Otto, S.P.2
  • 23
    • 0013979181 scopus 로고
    • The effect of linkage on the limits to artificial selection
    • Hill, W. G., and A. Robertson. 1966. The effect of linkage on the limits to artificial selection. Genet. Res. 8 : 269 294.
    • (1966) Genet. Res. , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 24
    • 0035970061 scopus 로고    scopus 로고
    • Fitness effects of advantageous mutations in evolving Escherichia coli populations
    • Imhof, M., and C. Schlotterer. 2001. Fitness effects of advantageous mutations in evolving Escherichia coli populations. Proc. Natl. Acad. Sci. USA 98 : 1113 1117.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 1113-1117
    • Imhof, M.1    Schlotterer, C.2
  • 25
    • 0036741701 scopus 로고    scopus 로고
    • The effect of deleterious alleles on adaptation in asexual populations
    • Johnson, T., and N. H. Barton. 2002. The effect of deleterious alleles on adaptation in asexual populations. Genetics 162 : 395 411.
    • (2002) Genetics , vol.162 , pp. 395-411
    • Johnson, T.1    Barton, N.H.2
  • 26
    • 11244275516 scopus 로고    scopus 로고
    • Spontaneous mutations in diploid Saccharomyces cerevisiae: More beneficial than expected
    • Joseph, S. B., and D. W. Hall. 2004. Spontaneous mutations in diploid Saccharomyces cerevisiae: more beneficial than expected. Genetics 168 : 1817 1825.
    • (2004) Genetics , vol.168 , pp. 1817-1825
    • Joseph, S.B.1    Hall, D.W.2
  • 27
    • 0000660047 scopus 로고
    • Diffusion models in population genetics
    • Kimura, M. 1964. Diffusion models in population genetics. J. Appl. Prob. 1 : 177 232.
    • (1964) J. Appl. Prob. , vol.1 , pp. 177-232
    • Kimura, M.1
  • 28
    • 33846202481 scopus 로고    scopus 로고
    • Mutations leading to loss of sporulation ability in Bacillus subtilis are sufficiently frequent to favor genetic canalization
    • Masel, J., and H. Maughan. 2007. Mutations leading to loss of sporulation ability in Bacillus subtilis are sufficiently frequent to favor genetic canalization. Genetics 175 : 453 457.
    • (2007) Genetics , vol.175 , pp. 453-457
    • Masel, J.1    Maughan, H.2
  • 29
    • 33745277137 scopus 로고    scopus 로고
    • The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis
    • Maughan, H., V. Callicotte, A. Hancock, C. Birky, W. Nicholson, and J. Masel. 2006. The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis. Evolution 60 : 686 695.
    • (2006) Evolution , vol.60 , pp. 686-695
    • Maughan, H.1    Callicotte, V.2    Hancock, A.3    Birky, C.4    Nicholson, W.5    Masel, J.6
  • 30
    • 0033543602 scopus 로고    scopus 로고
    • Clonal interference and the evolution of RNA viruses
    • Miralles, R., P. J. Gerrish, A. Moya, and S. F. Elena. 1999. Clonal interference and the evolution of RNA viruses. Science 285 : 1745 1747.
    • (1999) Science , vol.285 , pp. 1745-1747
    • Miralles, R.1    Gerrish, P.J.2    Moya, A.3    Elena, S.F.4
  • 31
    • 0001224667 scopus 로고
    • The relation of recombination to mutational advance
    • Muller, H. J. 1964. The relation of recombination to mutational advance. Am. Nat. 66 : 118 138.
    • (1964) Am. Nat. , vol.66 , pp. 118-138
    • Muller, H.J.1
  • 32
    • 0342657165 scopus 로고    scopus 로고
    • The rate of adaptation in asexuals
    • Orr, H. A. 2000. The rate of adaptation in asexuals. Genetics 155 : 961 968.
    • (2000) Genetics , vol.155 , pp. 961-968
    • Orr, H.A.1
  • 33
    • 0037398394 scopus 로고    scopus 로고
    • The distribution of fitness effects among beneficial mutations
    • Orr, H. A. 2003. The distribution of fitness effects among beneficial mutations. Genetics 163 : 1519 1526.
    • (2003) Genetics , vol.163 , pp. 1519-1526
    • Orr, H.A.1
  • 34
    • 0028229790 scopus 로고
    • A ruby in the rubbish: Beneficial mutations, deleterious mutations and the evolution of sex
    • Peck, J. R. 1994. A ruby in the rubbish: beneficial mutations, deleterious mutations and the evolution of sex. Genetics 137 : 597 606.
    • (1994) Genetics , vol.137 , pp. 597-606
    • Peck, J.R.1
  • 35
    • 42049093984 scopus 로고    scopus 로고
    • Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage φx174
    • Pepin, K. M., and H. A. Wichman. 2008. Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage φx174. BMC Evol. Biol. 8 : 85.
    • (2008) BMC Evol. Biol. , vol.8 , pp. 85
    • Pepin, K.M.1    Wichman, H.A.2
  • 36
    • 34547924819 scopus 로고    scopus 로고
    • Adaptive mutations in bacteria: High rate and small effects
    • Perfeito, L., L. Fernandes, C. Mota, and I. Gordo. 2007a. Adaptive mutations in bacteria: high rate and small effects. Science 317 : 813 815.
    • (2007) Science , vol.317 , pp. 813-815
    • Perfeito, L.1    Fernandes, L.2    Mota, C.3    Gordo, I.4
  • 37
    • 40949151137 scopus 로고    scopus 로고
    • The effect of spatial structure on adaptation in Escherichia coli
    • Perfeito, L., M. I. Pereira, P. R. A. Campos, and I. Gordo. 2007b. The effect of spatial structure on adaptation in Escherichia coli. Biol. Letts. 4 : 57 59.
    • (2007) Biol. Letts. , vol.4 , pp. 57-59
    • Perfeito, L.1    Pereira, M.I.2    Campos, P.R.A.3    Gordo, I.4
  • 38
    • 37848998555 scopus 로고    scopus 로고
    • The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation
    • Rouzine, I. M., E. Brunet, and C. O. Wilke. 2008. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor. Popul. Biol. 73 : 24 46.
    • (2008) Theor. Popul. Biol. , vol.73 , pp. 24-46
    • Rouzine, I.M.1    Brunet, E.2    Wilke, C.O.3
  • 39
    • 0037172667 scopus 로고    scopus 로고
    • Fitness effects of fixed beneficial mutations in microbial populations
    • Rozen, D. E., J. A. G. M. de Visser, and P. J. Gerrish. 2002. Fitness effects of fixed beneficial mutations in microbial populations. Curr. Biol. 12 : 1040 1045.
    • (2002) Curr. Biol. , vol.12 , pp. 1040-1045
    • Rozen, D.E.1    De Visser, J.A.G.M.2    Gerrish, P.J.3
  • 40
    • 0035544558 scopus 로고    scopus 로고
    • The probability that beneficial mutations are lost in populations with periodic bottlenecks
    • Wahl, L. M., and P. J. Gerrish. 2001. The probability that beneficial mutations are lost in populations with periodic bottlenecks. Evolution 55 : 2606 2610.
    • (2001) Evolution , vol.55 , pp. 2606-2610
    • Wahl, L.M.1    Gerrish, P.J.2
  • 41
    • 0036811710 scopus 로고    scopus 로고
    • Evaluating the impact of population bottlenecks in experimental evolution
    • Wahl, L. M., P. J. Gerrish, and I. Saika-Voivod. 2002. Evaluating the impact of population bottlenecks in experimental evolution. Genetics 162 : 961 971.
    • (2002) Genetics , vol.162 , pp. 961-971
    • Wahl, L.M.1    Gerrish, P.J.2    Saika-Voivod, I.3
  • 42
    • 4644276948 scopus 로고    scopus 로고
    • The speed of adaptation in large asexual populations
    • Wilke, C. O. 2004. The speed of adaptation in large asexual populations. Genetics 167 : 2045 2053.
    • (2004) Genetics , vol.167 , pp. 2045-2053
    • Wilke, C.O.1


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