Mutational effects on the clonal interference phenomenon

Evolution

Volumn 58, Issue 5, 2004, Pages 932-937

  Campos, Paulo R A ^a   De Oliveira, Viviane M ^a  

^a UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

Adaptation; Adaptive evolution; Beneficial mutations; Clonal interference; Fixation

Indexed keywords

ADAPTATION; CLONAL GROWTH; FIXATION; MUTATION;

EID: 2542475523     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2004.tb00427.x     Document Type: Article

References (24)

1. Barton, N. H. 1995. Linkage and the limits to natural selection. Genetics 140:821-841.
2. Campos, P. R. A. 2004. Fixation of beneficial mutations in the presence of epistatic interactions. Bull. Math. Biol. 66:473-486.
3. Campos, P. R. A., and J. F. Fontanari. 1999. Finite-size scaling of the error threshold transition in finite populations. J. Phys. A: Math. Gen. 32:L1-L7.
4. Campos, P. R. A., C. Adami, and C. O. Wilke. 2004. Modeling stochastic clonal interference. Pp. 21-39 in G. Ciobanu and G. Rozenberg, eds. Modeling in molecular biology. Springer Series in Natural Computing, Springer, Berlin.
5. Colato, A., and J. F. Fontanari. 2001. Soluble model for the accumulation of mutations in asexual populations. Phys. Rev. Lett. 87:238102.
6. Cuevas, J. M., S. F. Elena, and A. Moya. 2002. Molecular basis of adaptive convergence in experimental populations of RNA viruses. Genetics 162:533-542.
7. de Oliveira, V. M., and P. R. A. Campos. 2004. Dynamics of fixation of advantageous mutations. Physica A 337:546-554.
8. de Visser, J. A. G. M., C. W. Zeyl, P. J. Gerrish, J. L. Blanchard, and R. E. Lenski. 1999. Diminishing returns from mutation supply rate in asexual populations. Science 283:404-406.
9. Elena, S. F. 2002. Restriction to RNA virus adaptation: an experimental approach. Antonie Leeuwenhoek 81:135-142.
10. Fisher, R. A. 1930. The genetical theory of natural selection. Clarendon Press, Oxford, U.K.
11. Gerrish, P. J., and R. E. Lenski. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 102: 127-144.
12. Gillespie, J. H. 1991. The causes of molecular evolution. Oxford Univ. Press, Oxford, U.K.
13. Haigh, J. 1978. The accumulation of deleterious genes in a population: Muller's ratchet. Theor. Popul. Biol. 14:251-267.
14. Hill, W. G., and A. Robertson. 1966. The effect of linkage on the limits to artificial selection. Genet. Res. 8:269-294.
15. Johnson, T., and N. H. Barton. 2002. The effect of deleterious alleles on adaptation in asexual organisms. Genetics 162:395-411.
16. Kimura, M., and J. F. Crow. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
17. Miralles, R., P. J. Gerrish, A. Moya, and S. F. Elena. 1999. Clonal interference and the evolution of RNA viruses. Science 285: 1745-1747.
18. Orr, H. A. 2000. The rate of adaptation in asexuals. Genetics 155: 961-968.
19. _. 2003. The distribution of fitness effects among beneficial mutations. Genetics 163:1519-1526.
20. Peck, J. R. 1994. A ruby in the rubbish: beneficial mutations, deleterious mutations and the evolution of sex. Genetics 137: 597-606.
21. Rozen, D. E., J. A. G. M. de Visser, and P. J. Gerrish. 2002. Fitness effects of fixed beneficial mutations in microbial populations. Curr. Biol. 12:1040-1045.
22. Shaver, A. C., P. G. Dombrowski, J. Y. Sweeney, T. Treis, R. M. Zappala, and P. D. Sniegowski. 2002. Fitness evolution and the rise of mutator alleles in experimental Escherichia coli populations. Genetics 162:557-566.
23. Watterson, G. A. 1975. Number of segregating sites in genetic models without recombination. Theor. Popul. Biol. 10:256-276.
24. Wilke, C. O. 2003. Probability of fixation of an advantageous mutant in a viral quasispecies. Genetics 162:467-474.