-
1
-
-
42349093774
-
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
-
Amann R.I., and Fuchs B.M. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat. Rev. Microbiol. 6 (2008) 339-348
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 339-348
-
-
Amann, R.I.1
Fuchs, B.M.2
-
2
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0032032259
-
Monitoring the community structure of wastewater treatment plants: a comparison of old and new techniques
-
Amann R., Lemmer H., and Wagner M. Monitoring the community structure of wastewater treatment plants: a comparison of old and new techniques. Microbiol. Ecol. 25 (1998) 205-215
-
(1998)
Microbiol. Ecol.
, vol.25
, pp. 205-215
-
-
Amann, R.1
Lemmer, H.2
Wagner, M.3
-
5
-
-
0035329169
-
Quantification of nitrifying bacterial populations in a full-scale nitrifying trickling filter using fluorescent in situ hybridization
-
Biesterfeld S., Figueroa L., Hernandez M., and Russell P. Quantification of nitrifying bacterial populations in a full-scale nitrifying trickling filter using fluorescent in situ hybridization. Water Environ. Res. 73 (2001) 329-338
-
(2001)
Water Environ. Res.
, vol.73
, pp. 329-338
-
-
Biesterfeld, S.1
Figueroa, L.2
Hernandez, M.3
Russell, P.4
-
6
-
-
0027730024
-
Biofilms and their consequences with particular reference to hygiene in the food industry
-
Carpentier B., and Cerf O. Biofilms and their consequences with particular reference to hygiene in the food industry. J. Appl. Bacteriol. 75 (1993) 499-511
-
(1993)
J. Appl. Bacteriol.
, vol.75
, pp. 499-511
-
-
Carpentier, B.1
Cerf, O.2
-
7
-
-
0028866136
-
Microbial biofilms
-
Costerton J.W., Lewandowski Z., Caldwell D.E., Korber D.R., and Lappin-Scot H.M. Microbial biofilms. Annu. Rev. Microbiol. 49 (1995) 711-745
-
(1995)
Annu. Rev. Microbiol.
, vol.49
, pp. 711-745
-
-
Costerton, J.W.1
Lewandowski, Z.2
Caldwell, D.E.3
Korber, D.R.4
Lappin-Scot, H.M.5
-
8
-
-
34249870592
-
Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis
-
Daims H., and Wagner M. Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis. Appl. Microbiol. Biotechnol. 75 (2007) 237-248
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.75
, pp. 237-248
-
-
Daims, H.1
Wagner, M.2
-
9
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
-
Daims H., Bruhl A., Amann R.I., Schleifer K.H., and Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22 (1999) 434-444
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Bruhl, A.2
Amann, R.I.3
Schleifer, K.H.4
Wagner, M.5
-
10
-
-
0035653625
-
Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization
-
Daims H., Ramsing N.B., Schleifer K.H., and Wagner M. Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization. Appl. Environ. Microbiol. 67 (2001) 5810-5818
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5810-5818
-
-
Daims, H.1
Ramsing, N.B.2
Schleifer, K.H.3
Wagner, M.4
-
11
-
-
0035512205
-
In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants
-
Daims H., Nielsen J.L., Nielsen P.H., Schleifer K.H., and Wagner M. In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol. 67 (2001) 5273-5284
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5273-5284
-
-
Daims, H.1
Nielsen, J.L.2
Nielsen, P.H.3
Schleifer, K.H.4
Wagner, M.5
-
12
-
-
33644868597
-
daime, a novel image analysis program for microbial ecology and biofilm research
-
Daims H., Lucker S., and Wagner M. daime, a novel image analysis program for microbial ecology and biofilm research. Environ. Microbiol. 8 (2006) 200-213
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 200-213
-
-
Daims, H.1
Lucker, S.2
Wagner, M.3
-
13
-
-
0036230576
-
Seen any good biofilms lately?
-
Dunne Jr. W.M. Seen any good biofilms lately?. Clin. Microbiol. Rev. 15 (2002) 155-166
-
(2002)
Clin. Microbiol. Rev.
, vol.15
, pp. 155-166
-
-
Dunne Jr., W.M.1
-
14
-
-
0033855457
-
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
-
Fuchs B.M., Glöckner F.O., Wulf J., and Amann R. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 66 (2000) 3603-3607
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3603-3607
-
-
Fuchs, B.M.1
Glöckner, F.O.2
Wulf, J.3
Amann, R.4
-
16
-
-
0035286749
-
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm
-
Gieseke A., Purkhold U., Wagner M., Amann R., and Schramm A. Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Appl. Environ. Microbiol. 67 (2001) 1351-1362
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1351-1362
-
-
Gieseke, A.1
Purkhold, U.2
Wagner, M.3
Amann, R.4
Schramm, A.5
-
17
-
-
0036132630
-
Simultaneous P and N removal in a sequencing batch biofilm reactor: insights from reactor and microscale investigations
-
Gieseke A., Arnz P., Amann R., and Schramm A. Simultaneous P and N removal in a sequencing batch biofilm reactor: insights from reactor and microscale investigations. Water Res. 36 (2002) 501-509
-
(2002)
Water Res.
, vol.36
, pp. 501-509
-
-
Gieseke, A.1
Arnz, P.2
Amann, R.3
Schramm, A.4
-
18
-
-
0038062821
-
Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm
-
Gieseke A., Bjerrum L., Wagner M., and Amann R. Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm. Environ. Microbiol. 5 (2003) 355-369
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 355-369
-
-
Gieseke, A.1
Bjerrum, L.2
Wagner, M.3
Amann, R.4
-
19
-
-
0032981650
-
Influence of organic and ammonia loading on nitrifier activity and nitrification performance for a two-stage biological aerated filter system
-
Gilmore K., Husovitz R., Holst K.J.T., and Love N.G. Influence of organic and ammonia loading on nitrifier activity and nitrification performance for a two-stage biological aerated filter system. Water Sci. Technol. 39 (1999) 227-234
-
(1999)
Water Sci. Technol.
, vol.39
, pp. 227-234
-
-
Gilmore, K.1
Husovitz, R.2
Holst, K.J.T.3
Love, N.G.4
-
20
-
-
0033764531
-
Quantification of biofilm structures by the novel computer program COMSTAT
-
Heydorn A., Nielsen A.T., Hentzer M., Sternberg C., Givskov M., Ersbøll B.K., and Molin S. Quantification of biofilm structures by the novel computer program COMSTAT. Microbiology 14 (2000) 2395-2407
-
(2000)
Microbiology
, vol.14
, pp. 2395-2407
-
-
Heydorn, A.1
Nielsen, A.T.2
Hentzer, M.3
Sternberg, C.4
Givskov, M.5
Ersbøll, B.K.6
Molin, S.7
-
21
-
-
33747376356
-
Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes
-
Kubota K., Ohashi A., Imachi H., and Harada H. Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes. Appl. Environ. Microbiol. 72 (2006) 5311-5317
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5311-5317
-
-
Kubota, K.1
Ohashi, A.2
Imachi, H.3
Harada, H.4
-
23
-
-
0026262003
-
Biofilms: an ESEM evaluation of artifacts introduced during SEM preparation
-
Little B., Wagner P., Ray R., Pope R., and Scheetz R. Biofilms: an ESEM evaluation of artifacts introduced during SEM preparation. J. Ind. Microbiol. 8 (1991) 213-222
-
(1991)
J. Ind. Microbiol.
, vol.8
, pp. 213-222
-
-
Little, B.1
Wagner, P.2
Ray, R.3
Pope, R.4
Scheetz, R.5
-
24
-
-
33745791511
-
Nitrite concentration influences the population structure of Nitrospira-like bacteria
-
Maixner F., Noguera D.R., Anneser B., Stoecker K., Wegl G., Wagner M., and Daims H. Nitrite concentration influences the population structure of Nitrospira-like bacteria. Environ. Microbiol. 8 (2006) 1487-1495
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 1487-1495
-
-
Maixner, F.1
Noguera, D.R.2
Anneser, B.3
Stoecker, K.4
Wegl, G.5
Wagner, M.6
Daims, H.7
-
25
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobateria: problems and solutions
-
Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobateria: problems and solutions. Syst. Appl. Microbiol. 15 (1992) 593-600
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.H.5
-
27
-
-
0030001221
-
Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
-
Mobarry B.K., Wagner M., Urbain V., Rittmann B.E., and Stahl D.A. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol. 62 (1996) 2156-2162
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2156-2162
-
-
Mobarry, B.K.1
Wagner, M.2
Urbain, V.3
Rittmann, B.E.4
Stahl, D.A.5
-
28
-
-
62649099500
-
Microscopy techniques applied for monitoring the development of aquatic biofilms
-
Morato, J., Codony, F., Mas, J., 2004. Microscopy techniques applied for monitoring the development of aquatic biofilms. In: Current Issues on Multidisciplinary Microscopy Research and Education, pp. 93-100.
-
(2004)
Current Issues on Multidisciplinary Microscopy Research and Education
, pp. 93-100
-
-
Morato, J.1
Codony, F.2
Mas, J.3
-
29
-
-
0032976059
-
In situ analysis of biofilms as determined by in situ hybridization and the use of microelectrodes
-
Okabe S., Satoh H., and Watanabe Y. In situ analysis of biofilms as determined by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol. 65 (1999) 3182-3191
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3182-3191
-
-
Okabe, S.1
Satoh, H.2
Watanabe, Y.3
-
30
-
-
0033942841
-
Tertiary nitrification in an up flow biofilter on floating media: influence of temperature and COD load
-
Payraudeau M., Paffoni C., and Gousailles M. Tertiary nitrification in an up flow biofilter on floating media: influence of temperature and COD load. Water Sci. Technol. 41 (2000) 21-27
-
(2000)
Water Sci. Technol.
, vol.41
, pp. 21-27
-
-
Payraudeau, M.1
Paffoni, C.2
Gousailles, M.3
-
31
-
-
0036276618
-
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
-
Pernthaler A., Pernthaler J., and Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68 (2002) 3094-3101
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
32
-
-
33847253819
-
Enhanced visualization of microbial biofilms by staining and environmental scanning electron microscopy
-
Priester J.H., Horst A.M., Van de Werfhorst L.C., Saleta J.L., Mertes L.A.K., and Holden P.A. Enhanced visualization of microbial biofilms by staining and environmental scanning electron microscopy. J. Microbiol. Methods 68 (2007) 577-587
-
(2007)
J. Microbiol. Methods
, vol.68
, pp. 577-587
-
-
Priester, J.H.1
Horst, A.M.2
Van de Werfhorst, L.C.3
Saleta, J.L.4
Mertes, L.A.K.5
Holden, P.A.6
-
33
-
-
2042422315
-
Microbial precipitation of dolomite in methanogenic groundwater
-
Roberts J.A., Bennett P.C., Gonzalez L.A., Macpherson G.L., and Milliken K.L. Microbial precipitation of dolomite in methanogenic groundwater. Geology 32 (2004) 277-280
-
(2004)
Geology
, vol.32
, pp. 277-280
-
-
Roberts, J.A.1
Bennett, P.C.2
Gonzalez, L.A.3
Macpherson, G.L.4
Milliken, K.L.5
-
34
-
-
0342711280
-
Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification
-
Schönhuber W., Fuchs B., Juretschko S., and Amann R. Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification. Appl. Environ. Microbiol. 63 (1997) 3268-3273
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3268-3273
-
-
Schönhuber, W.1
Fuchs, B.2
Juretschko, S.3
Amann, R.4
-
35
-
-
0029659250
-
Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes
-
Schramm A., Larsen L.H., Revsbech N.P., Ramsing N.B., Amann R., and Schleifer K.H. Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol. 62 (1996) 4641-4647
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4641-4647
-
-
Schramm, A.1
Larsen, L.H.2
Revsbech, N.P.3
Ramsing, N.B.4
Amann, R.5
Schleifer, K.H.6
-
36
-
-
0031684927
-
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
-
Schramm A., De Beer D., Wagner M., and Amann R. Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl. Environ. Microbiol. 64 (1998) 3480-3485
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3480-3485
-
-
Schramm, A.1
De Beer, D.2
Wagner, M.3
Amann, R.4
-
37
-
-
0032812283
-
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors
-
Schramm A., De Beer D., Van Den Heuvel J.C., Ottengraf S., and Amann R. Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors. Appl. Environ. Microbiol. 65 (1999) 3690-3696
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3690-3696
-
-
Schramm, A.1
De Beer, D.2
Van Den Heuvel, J.C.3
Ottengraf, S.4
Amann, R.5
-
38
-
-
0017564521
-
Nitrification and nitrogen removal
-
Sharma B., and Ahlert R.C. Nitrification and nitrogen removal. Water Res. 11 (1977) 897-925
-
(1977)
Water Res.
, vol.11
, pp. 897-925
-
-
Sharma, B.1
Ahlert, R.C.2
-
39
-
-
37849046116
-
Toluidine blue-mediated photodunamic effects on Staphylococcal biofilms
-
Sharma M., Visai L., Bragheri F., Cristiani I., Gupta K.P., and Speziale P. Toluidine blue-mediated photodunamic effects on Staphylococcal biofilms. Antimicrob. Agents Chemother. 52 (2008) 299-305
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 299-305
-
-
Sharma, M.1
Visai, L.2
Bragheri, F.3
Cristiani, I.4
Gupta, K.P.5
Speziale, P.6
-
40
-
-
0242488991
-
Methodology of protistan disovery: from rRNA detaction to quality scanning electron microscope images
-
Stoeck T., Fowle W.H., and Epstein S.S. Methodology of protistan disovery: from rRNA detaction to quality scanning electron microscope images. Appl. Environ. Microbiol. 69 (2003) 6856-6863
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6856-6863
-
-
Stoeck, T.1
Fowle, W.H.2
Epstein, S.S.3
-
41
-
-
0030000173
-
Comparison of microscope techniques for the examination of biofilms
-
Surmana S.B., Walker J.T., Goddard D.T., Mortond L.H.G., Keevilb C.W., Weaverc A., Skinnere A., Hansonf K., Caldwell D., and Kurtze J. Comparison of microscope techniques for the examination of biofilms. J. Microbiol. Methods 25 (1996) 57-70
-
(1996)
J. Microbiol. Methods
, vol.25
, pp. 57-70
-
-
Surmana, S.B.1
Walker, J.T.2
Goddard, D.T.3
Mortond, L.H.G.4
Keevilb, C.W.5
Weaverc, A.6
Skinnere, A.7
Hansonf, K.8
Caldwell, D.9
Kurtze, J.10
-
42
-
-
0028556627
-
Identification and in situ detection of gram-negative filamentous bacteria in activated sludge
-
Wagner M., Amann R., Kampfer P., Assmus B., Hartmann A., Hutzler P., Springer N., and Schliefer K.-H. Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. Syst. Appl. Microbiol. 17 (1994) 405-417
-
(1994)
Syst. Appl. Microbiol.
, vol.17
, pp. 405-417
-
-
Wagner, M.1
Amann, R.2
Kampfer, P.3
Assmus, B.4
Hartmann, A.5
Hutzler, P.6
Springer, N.7
Schliefer, K.-H.8
-
43
-
-
0029825018
-
In situ analysis of nitrifying bacteria in sewage treatment plants
-
Wagner M., Rath G., Koops H.-P., and Amann R. In situ analysis of nitrifying bacteria in sewage treatment plants. Water Sci. Technol. 34 (1996) 237-244
-
(1996)
Water Sci. Technol.
, vol.34
, pp. 237-244
-
-
Wagner, M.1
Rath, G.2
Koops, H.-P.3
Amann, R.4
-
44
-
-
31944434615
-
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays
-
Wagner M., Nielsen P.H., Loy A., Nielsen J.L., and Daims H. Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays. Curr. Opin. Biotechnol. 17 (2006) 83-91
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, pp. 83-91
-
-
Wagner, M.1
Nielsen, P.H.2
Loy, A.3
Nielsen, J.L.4
Daims, H.5
-
46
-
-
0033986319
-
In situ hybridization of Prochlorococcus and Synechococcus (marine cyanobacteria) spp. with rRNA-targeted peptide nucleic acid probes
-
Worden A.Z., Chisholm S.W., and Binder B.J. In situ hybridization of Prochlorococcus and Synechococcus (marine cyanobacteria) spp. with rRNA-targeted peptide nucleic acid probes. Appl. Environ. Microbiol. 66 (2000) 284-289
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 284-289
-
-
Worden, A.Z.1
Chisholm, S.W.2
Binder, B.J.3
|