-
1
-
-
0029060923
-
Dinucleotide relative abundance extremes: A genomic signature
-
Karlin, S. and C. Burge, Dinucleotide relative abundance extremes: a genomic signature. Trends Genet, 1995. 11(7): p. 283-90.
-
(1995)
Trends Genet
, vol.11
, Issue.7
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
2
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin, S., J. Mrazek, and A.M. Campbell, Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol, 1997. 179(12): p. 3899-913.
-
(1997)
J Bacteriol
, vol.179
, Issue.12
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
3
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
Campbell, A., J. Mrazek, and S. Karlin, Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc Natl Acad Sci U S A, 1999. 96(16): p. 9184-9.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.16
, pp. 9184-9189
-
-
Campbell, A.1
Mrazek, J.2
Karlin, S.3
-
5
-
-
0032823783
-
Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
-
Deschavanne, P.J., et al., Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. Mol Biol Evol, 1999. 16(10): p. 1391-9.
-
(1999)
Mol Biol Evol
, vol.16
, Issue.10
, pp. 1391-1399
-
-
Deschavanne, P.J.1
-
6
-
-
0035049521
-
Genome-scale compositional comparisons in eukaryotes
-
Gentles, A.J. and S. Karlin, Genome-scale compositional comparisons in eukaryotes. Genome Res, 2001. 11(4): p. 540-6.
-
(2001)
Genome Res
, vol.11
, Issue.4
, pp. 540-546
-
-
Gentles, A.J.1
Karlin, S.2
-
7
-
-
3042830466
-
Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference
-
Bastien, O., et al., Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference. Gene, 2004. 336(2): p. 163-73.
-
(2004)
Gene
, vol.336
, Issue.2
, pp. 163-173
-
-
Bastien, O.1
-
8
-
-
14544301585
-
Codon bias signatures, organization of microorganisms in codon space, and lifestyle
-
Carbone, A., F. Kepes, and A. Zinovyev, Codon bias signatures, organization of microorganisms in codon space, and lifestyle. Mol Biol Evol, 2005. 22(3): p. 547-61.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.3
, pp. 547-561
-
-
Carbone, A.1
Kepes, F.2
Zinovyev, A.3
-
9
-
-
0032426005
-
Comparative DNA analysis across diverse genomes
-
Karlin, S., A.M. Campbell, and J. Mrazek, Comparative DNA analysis across diverse genomes. Annu Rev Genet, 1998. 32: p. 185-225.
-
(1998)
Annu Rev Genet
, vol.32
, pp. 185-225
-
-
Karlin, S.1
Campbell, A.M.2
Mrazek, J.3
-
10
-
-
10944235924
-
Comparative genomic structure of prokaryotes
-
Bentley, S.D. and J. Parkhill, Comparative genomic structure of prokaryotes. Annu Rev Genet, 2004. 38: p. 771-92.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 771-792
-
-
Bentley, S.D.1
Parkhill, J.2
-
11
-
-
0034917221
-
Determination of bias in the relative abundance of oligonucleotides in DNA sequences
-
Elhai, J., Determination of bias in the relative abundance of oligonucleotides in DNA sequences. J Comput Biol, 2001. 8(2): p. 151-75.
-
(2001)
J Comput Biol
, vol.8
, Issue.2
, pp. 151-175
-
-
Elhai, J.1
-
12
-
-
0141988460
-
Dinucleotide compositional analysis of Sinorhizobium meliloti using the genome signature: Distinguishing chromosomes and plasmids
-
Wong, K., T.M. Finan, and G.B. Golding, Dinucleotide compositional analysis of Sinorhizobium meliloti using the genome signature: distinguishing chromosomes and plasmids. Funct Integr Genomics, 2002. 2(6): p. 274-81.
-
(2002)
Funct Integr Genomics
, vol.2
, Issue.6
, pp. 274-281
-
-
Wong, K.1
Finan, T.M.2
Golding, G.B.3
-
13
-
-
0037494681
-
Genome comparisons and analysis
-
Karlin, S., J. Mrazek, and A.J. Gentles, Genome comparisons and analysis. Curr Opin Struct Biol, 2003. 13(3): p. 344-52.
-
(2003)
Curr Opin Struct Biol
, vol.13
, Issue.3
, pp. 344-352
-
-
Karlin, S.1
Mrazek, J.2
Gentles, A.J.3
-
15
-
-
23144435335
-
-
Fertil, B., et al., GENSTYLE: exploration and analysis of DNA sequences with genomic signature. Nucleic Acids Res, 2005. 33(Web Server issue): p. W512-5.
-
Fertil, B., et al., GENSTYLE: exploration and analysis of DNA sequences with genomic signature. Nucleic Acids Res, 2005. 33(Web Server issue): p. W512-5.
-
-
-
-
16
-
-
0032173634
-
Global dinucleotide signatures and analysis of genomic heterogeneity
-
Karlin, S., Global dinucleotide signatures and analysis of genomic heterogeneity. Curr Opin Microbiol, 1998. 1(5): p. 598-610.
-
(1998)
Curr Opin Microbiol
, vol.1
, Issue.5
, pp. 598-610
-
-
Karlin, S.1
-
17
-
-
0242500968
-
Informatics for unveiling hidden genome signatures
-
Abe, T., et al., Informatics for unveiling hidden genome signatures. Genome Res, 2003. 13(4): p. 693-702.
-
(2003)
Genome Res
, vol.13
, Issue.4
, pp. 693-702
-
-
Abe, T.1
-
18
-
-
0037460960
-
The Z curve database: A graphic representation of genome sequences
-
Zhang, C.T., R. Zhang, and H.Y. Ou, The Z curve database: a graphic representation of genome sequences. Bioinformatics, 2003. 19(5): p. 593-9.
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 593-599
-
-
Zhang, C.T.1
Zhang, R.2
Ou, H.Y.3
-
19
-
-
0025340372
-
Chaos game representation of gene structure
-
Jeffrey, H.J., Chaos game representation of gene structure. Nucleic Acids Res, 1990. 18(8): p. 2163-70.
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.8
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
20
-
-
0642374412
-
A novel bioinformatic strategy for unveiling hidden genome signatures of eukaryotes: Self-organizing map of oligonucleotide frequency
-
Abe, T., et al., A novel bioinformatic strategy for unveiling hidden genome signatures of eukaryotes: self-organizing map of oligonucleotide frequency. Genome Inform, 2002. 13: p. 12-20.
-
(2002)
Genome Inform
, vol.13
, pp. 12-20
-
-
Abe, T.1
-
21
-
-
0033976523
-
Discovery and modeling of transcriptional regulatory regions
-
Fickett, J.W. and W.W. Wasserman, Discovery and modeling of transcriptional regulatory regions. Curr Opin Biotechnol, 2000. 11(1): p. 19-24.
-
(2000)
Curr Opin Biotechnol
, vol.11
, Issue.1
, pp. 19-24
-
-
Fickett, J.W.1
Wasserman, W.W.2
-
22
-
-
13844275301
-
Similarity of position frequency matrices for transcription factor binding sites
-
Schones, D.E., P. Sumazin, and M.Q. Zhang, Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics, 2005. 21(3): p. 307-13.
-
(2005)
Bioinformatics
, vol.21
, Issue.3
, pp. 307-313
-
-
Schones, D.E.1
Sumazin, P.2
Zhang, M.Q.3
-
23
-
-
0032562789
-
Identification of regulatory regions which confer muscle-specific gene expression
-
Wasserman, W.W. and J.W. Fickett, Identification of regulatory regions which confer muscle-specific gene expression. J Mol Biol, 1998. 278(1): p. 167-81.
-
(1998)
J Mol Biol
, vol.278
, Issue.1
, pp. 167-181
-
-
Wasserman, W.W.1
Fickett, J.W.2
-
24
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman, W.W., et al., Human-mouse genome comparisons to locate regulatory sites. Nat Genet, 2000. 26(2): p. 225-8.
-
(2000)
Nat Genet
, vol.26
, Issue.2
, pp. 225-228
-
-
Wasserman, W.W.1
-
25
-
-
62649125494
-
Decoding the blueprint (editor's summary)
-
14 June
-
Decoding the blueprint (editor's summary), Nature 447 (14 June 2007).
-
(2007)
Nature
, vol.447
-
-
-
27
-
-
34547456988
-
A computational study of bidirectional promoters in the human genome
-
Zhang, Y, ed, Heidelberg, pp
-
Yang, M.Q. and Elnitski, L. (2007) A computational study of bidirectional promoters in the human genome. In Springer Verlag Lecture Notes in Bioinformatics (Zhang, Y., ed.), Heidelberg, pp. 361-371.
-
(2007)
Springer Verlag Lecture Notes in Bioinformatics
, pp. 361-371
-
-
Yang, M.Q.1
Elnitski, L.2
-
28
-
-
0037188910
-
Bidirectional gene organization: A common architectural feature of the human genome
-
Adachi N, Lieber MR (2002) Bidirectional gene organization: a common architectural feature of the human genome. Cell 109: 807-809.
-
(2002)
Cell
, vol.109
, pp. 807-809
-
-
Adachi, N.1
Lieber, M.R.2
-
29
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, et al. (2005) Reactome: a knowledgebase of biological pathways. Nucleic Acids Res 33: D428-432.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
-
30
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE et al: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447(7146):799-816.
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
-
31
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
Wasserman WW, Sandelin A: Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 2004, 5(4):276-287.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.4
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
32
-
-
62649094248
-
-
August
-
Lee, S. S., Seeking Significant Oligomers via Set Partitions Expected Count, International Journal of Computational Science, 2(4), August, 2008.
-
(2008)
Seeking Significant Oligomers via Set Partitions Expected Count, International Journal of Computational Science
, vol.2
, Issue.4
-
-
Lee, S.S.1
|