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Volumn 19, Issue 5, 2003, Pages 593-599

The Z curve database: A graphic representation of genome sequences

Author keywords

[No Author keywords available]

Indexed keywords

ARCHEAN; ARTICLE; BACTERIAL GENE; BACTERIOPHAGE; CELL ORGANELLE; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DNA CONTENT; DNA REPLICATION ORIGIN; DNA SEQUENCE; EUKARYOTE; GENE REPLICATION; GENE SEQUENCE; GENETIC DATABASE; INFORMATION PROCESSING; MATHEMATICAL COMPUTING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; TRANSCRIPTION TERMINATION; VIROID; VIRUS GENE;

EID: 0037460960     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg041     Document Type: Article
Times cited : (131)

References (20)
  • 1
    • 0000897884 scopus 로고
    • Chemical specificity of nucleic acids and mechanism of their enzymatic degradation
    • Chargaff,E. (1950) Chemical specificity of nucleic acids and mechanism of their enzymatic degradation. Experientia, 6, 201-240.
    • (1950) Experientia , vol.6 , pp. 201-240
    • Chargaff, E.1
  • 2
    • 0013003060 scopus 로고
    • Computer visualization of long genomic sequences invited IEEE special issue
    • Cork,D.J. and Wu,D. (1993) Computer visualization of long genomic sequences invited IEEE special issue. Visualization in the Sciences, 308-315.
    • (1993) Visualization in the Sciences , pp. 308-315
    • Cork, D.J.1    Wu, D.2
  • 3
    • 0030976320 scopus 로고    scopus 로고
    • Strand asymmetries in DNA evolution
    • Francino,M.P. and Ochman,H. (1997) Strand asymmetries in DNA evolution. Trends Genet., 3, 240-245.
    • (1997) Trends Genet. , vol.3 , pp. 240-245
    • Francino, M.P.1    Ochman, H.2
  • 4
    • 0032860238 scopus 로고    scopus 로고
    • Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms
    • Frank,A.C. and Lobry,R. (1999) Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. Gene, 238, 65-77.
    • (1999) Gene , vol.238 , pp. 65-77
    • Frank, A.C.1    Lobry, R.2
  • 5
    • 0032524384 scopus 로고    scopus 로고
    • Analyzing genomes with cumulative skew diagrams
    • Grigoriev,A. (1998) Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res., 26, 2286-2290.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2286-2290
    • Grigoriev, A.1
  • 6
    • 0037444091 scopus 로고    scopus 로고
    • ZCURVE: A new system for recognizing protein-coding genes in bacterial and archaeal genomes
    • in press
    • Guo,F-.B., Ou,H.-Y. and Zhang,C.-T. (2003) ZCURVE: A new system for recognizing protein-coding genes in bacterial and archaeal genomes. Nucleic Acids Res., 31, in press.
    • (2003) Nucleic Acids Res. , vol.31
    • Guo, F.-B.1    Ou, H.-Y.2    Zhang, C.-T.3
  • 7
    • 0020659327 scopus 로고
    • H Curve - A novel method of representation of nucleotide series especially suitable for long DNA sequence
    • Hamori,E. and Ruskin,J. (1983) H Curve - a novel method of representation of nucleotide series especially suitable for long DNA sequence. J. Biol. Chem., 258, 1318-1327.
    • (1983) J. Biol. Chem. , vol.258 , pp. 1318-1327
    • Hamori, E.1    Ruskin, J.2
  • 8
    • 0036166511 scopus 로고    scopus 로고
    • Locating probable genes using Fourier transform approach
    • Issac,B., Singh,H., Kayr,H. and Raghava,G.P.S. (2002) Locating probable genes using Fourier transform approach. Bioinformatics, 18, 196-197.
    • (2002) Bioinformatics , vol.18 , pp. 196-197
    • Issac, B.1    Singh, H.2    Kayr, H.3    Raghava, G.P.S.4
  • 9
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • Jeffrey,H.J. (1990) Chaos game representation of gene structure. Nucleic Acids Res., 18, 2163-2170.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 10
    • 0029805251 scopus 로고    scopus 로고
    • A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria
    • Lobry,J.R. (1996) A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria. Biochimie, 78, 323-326.
    • (1996) Biochimie , vol.78 , pp. 323-326
    • Lobry, J.R.1
  • 11
    • 0014302250 scopus 로고
    • Separation of B. subtilis DNA into complementary strands. III. Direct Analysis
    • Rudner,R., Karkas,J.D. and Chargaff,E. (1968) Separation of B. subtilis DNA into complementary strands. III. Direct Analysis. Proc. Natl Acad. Sci. USA, 60, 921-922.
    • (1968) Proc. Natl. Acad. Sci. USA , vol.60 , pp. 921-922
    • Rudner, R.1    Karkas, J.D.2    Chargaff, E.3
  • 12
    • 0034830866 scopus 로고    scopus 로고
    • Identification of protein-coding genes in the genome of Vibrio cholerae with more than 98% accuracy using occurrence frequencies of single nucleotides
    • Wang,J. and Zhang,C.T. (2001) Identification of protein-coding genes in the genome of Vibrio cholerae with more than 98% accuracy using occurrence frequencies of single nucleotides. Eur. J. Biochem., 268, 4261-4268.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 4261-4268
    • Wang, J.1    Zhang, C.T.2
  • 13
    • 0031760475 scopus 로고    scopus 로고
    • A new Fourier transform approach for protein coding measure based on the format of the Z curve
    • Yan,M., Lin,Z.S. and Zhang,C.T. (1998) A new Fourier transform approach for protein coding measure based on the format of the Z curve. Bioinformatics, 14, 685-690.
    • (1998) Bioinformatics , vol.14 , pp. 685-690
    • Yan, M.1    Lin, Z.S.2    Zhang, C.T.3
  • 14
    • 0031558402 scopus 로고    scopus 로고
    • A symmetrical theory of DNA sequences
    • Zhang,C.T. (1997) A symmetrical theory of DNA sequences. J. Theor. Biol., 187, 297-306.
    • (1997) J. Theor. Biol. , vol.187 , pp. 297-306
    • Zhang, C.T.1
  • 15
    • 0034662286 scopus 로고    scopus 로고
    • Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve
    • Zhang,C.T. and Wang,J. (2000) Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve. Nucleic Acids Res., 28, 2804-2814.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2804-2814
    • Zhang, C.T.1    Wang, J.2
  • 16
    • 0034755052 scopus 로고    scopus 로고
    • A novel method to calculate the G+C content of genomic DNA sequences
    • Zhang,C.T., Wang,J. and Zhang,R. (2001) A novel method to calculate the G+C content of genomic DNA sequences. J. Biomol. Struc. Dyn., 19, 333-341.
    • (2001) J. Biomol. Struc. Dyn. , vol.19 , pp. 333-341
    • Zhang, C.T.1    Wang, J.2    Zhang, R.3
  • 17
    • 0026059039 scopus 로고
    • Analysis of distribution of bases in the coding sequences by a diagrammatic technique
    • Zhang,C.T. and Zhang,R. (1991) Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res., 19, 6313-6317.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6313-6317
    • Zhang, C.T.1    Zhang, R.2
  • 18
    • 0027995001 scopus 로고
    • Z curves, an intuitive tool for visualizing and analyzing DNA sequences
    • Zhang,R. and Zhang,C.T. (1994) Z curves, an intuitive tool for visualizing and analyzing DNA sequences. J. Biomol. Struc. Dyn., 11, 767-782.
    • (1994) J. Biomol. Struc. Dyn. , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.T.2
  • 19
    • 0036401109 scopus 로고    scopus 로고
    • Single replication origin of the archaeon Methanosarcina mazei revealed by the Z curve method
    • Zhang,R. and Zhang,C.T. (2002) Single replication origin of the archaeon Methanosarcina mazei revealed by the Z curve method. Biochem. Biophys. Res. Commun., 297, 396-400.
    • (2002) Biochem. Biophys. Res. Commun. , vol.297 , pp. 396-400
    • Zhang, R.1    Zhang, C.T.2
  • 20
    • 0012914683 scopus 로고    scopus 로고
    • An isochore map of the human genome based on the Z curve method
    • in press
    • Zhang,C.-T. and Zhang,R. (2003) An isochore map of the human genome based on the Z curve method. Gene, in press.
    • (2003) Gene
    • Zhang, C.-T.1    Zhang, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.