Glycosylation site analysis of human platelets by electrostatic repulsion hydrophilic interaction chromatography

Clinical Proteomics

Volumn 4, Issue 1-2, 2008, Pages 25-36

  Lewandrowski, Urs ^a   Lohrig, Katharina ^b   Zahedi, René P ^a   Wolters, Dirk ^b   Sickmann, Albert ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

Electrostatic repulsion hydrophilic interaction chromatography; Glycosylation; Mass spectrometry; Platelet

Indexed keywords

GLYCOPEPTIDE;

ARTICLE; CELL FUNCTION; CELL INTERACTION; CELLULAR DISTRIBUTION; CHROMATOGRAPHY; CONTROLLED STUDY; ELECTROSTATIC REPULSION HYDROPHILIC INTERACTION CHROMATOGRAPHY; HUMAN; HUMAN CELL; MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN GLYCOSYLATION; PROTEIN PROCESSING; PROTEIN STRUCTURE; THROMBOCYTE;

EID: 62549122041     PISSN: 15426416     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12014-008-9006-z     Document Type: Article

References (26)

1. TJ Kunicki Y Cheli M Moroi K Furihata 2005 The influence of N-linked glycosylation on the function of platelet glycoprotein VI Blood 106 8 2744 9
2. KM Hoffmeister TW Felbinger H Falet 2003 The clearance mechanism of chilled blood platelets Cell 112 1 87 97
3. EC Josefsson HH Gebhard TP Stossel JH Hartwig KM Hoffmeister 2005 The macrophage alphaMbeta2 integrin alphaM lectin domain mediates the phagocytosis of chilled platelets J Biol Chem 280 18 18025 32
4. AT Nurden P Nurden 2006 Inherited disorders of platelets: an update Curr Opin Hematol 13 3 157 62
5. T Ju RD Cummings 2005 Protein glycosylation: chaperone mutation in Tn syndrome Nature 437 7063 1252
6. T Ju RD Cummings 2002 A unique molecular chaperone Cosmc required for activity of the mammalian core 1 beta 3-galactosyltransferase Proc Natl Acad Sci USA 99 26 16613 8
7. J Stahl-Zeng V Lange R Ossola R Aebersold B Domon 2007 High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites Mol Cell Proteomics 6 10 1809 17
8. H Kaji H Saito Y Yamauchi 2003 Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins Nat Biotechnol 21 6 667 72
9. H Zhang XJ Li DB Martin R Aebersold 2003 Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry Nat Biotechnol 21 6 660 6
10. G Alvarez-Manilla J Atwood 3rd Y Guo NL Warren R Orlando M Pierce 2006 Tools for glycoproteomic analysis: size exclusion chromatography facilitates identification of tryptic glycopeptides with N-linked glycosylation sites J Proteome Res 5 3 701 8
11. P Hagglund J Bunkenborg F Elortza ON Jensen P Roepstorff 2004 A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation J Proteome Res 3 3 556 66
12. MJ Omaetxebarria P Hagglund F Elortza NM Hooper JM Arizmendi ON Jensen 2006 Isolation and characterization of glycosylphosphatidylinositol-anchored peptides by hydrophilic interaction chromatography and MALDI tandem mass spectrometry Anal Chem 78 10 3335 41
13. U Lewandrowski RP Zahedi J Moebius U Walter A Sickmann 2007 Enhanced N-glycosylation site analysis of sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes Mol Cell Proteomics 6 11 1933 41
14. B Bodenmiller LN Mueller M Mueller B Domon R Aebersold 2007 Reproducible isolation of distinct, overlapping segments of the phosphoproteome Nat Methods 4 3 231 7
15. MR Larsen SS Jensen LA Jakobsen NH Heegaard 2007 Exploring the sialiome using titanium dioxide chromatography and mass spectrometry Mol Cell Proteomics 6 10 1778 87
16. AJ Alpert 2008 Electrostatic repulsion hydrophilic interaction chromatography for isocratic separation of charged solutes and selective isolation of phosphopeptides Anal Chem 80 1 62 76
17. NN Tandon RH Lipsky WH Burgess GA Jamieson 1989 Isolation and characterization of platelet glycoprotein IV (CD36) J Biol Chem 264 13 7570 5
18. U Lewandrowski J Moebius U Walter A Sickmann 2006 Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach Mol Cell Proteomics 5 2 226 33
19. J Schindler U Lewandrowski A Sickmann E Friauf H Gerd Nothwang 2006 Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning Mol Cell Proteomics 5 2 390 400
20. Y Fujiki AL Hubbard S Fowler PB Lazarow 1982 Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum J Cell Biol 93 1 97 102
21. LY Geer SP Markey JA Kowalak 2004 Open mass spectrometry search algorithm J Proteome Res 3 5 958 64
22. SA Beausoleil M Jedrychowski D Schwartz 2004 Large-scale characterization of HeLa cell nuclear phosphoproteins Proc Natl Acad Sci USA 101 33 12130 5
23. MW Pinkse PM Uitto MJ Hilhorst B Ooms AJ Heck 2004 Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns Anal Chem 76 14 3935 43
24. DJ Harvey DR Wing B Kuster IB Wilson 2000 Composition of N-linked carbohydrates from ovalbumin and co-purified glycoproteins J Am Soc Mass Spectrom 11 6 564 71
25. L Hernandez-Ruiz F Valverde MD Jimenez-Nunez 2007 Organellar proteomics of human platelet dense granules reveals that 14-3-3zeta is a granule protein related to atherosclerosis J Proteome Res 6 11 4449 57
26. GE Crooks G Hon JM Chandonia SE Brenner 2004 WebLogo: a sequence logo generator Genome Res 14 6 1188 90