Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms

Molecular and General Genetics

Volumn 253, Issue 6, 1997, Pages 703-710

  Reyna Lopez G E ^a,c   Simpson, J ^a   Ruiz Herrera, J ^a,b  

^a DEPARTAMENTO DE INGENIERÍA GENÉTICA   (Mexico)

^b DEPARTAMENTO DE FÍSICA   (Mexico)

^c UNIVERSITY OF GUANAJUATO   (Mexico)

Author keywords

Amplified fragment length polymorphism; DNA methylation; Fungal dimorphism

Indexed keywords

ARTICLE; DNA METHYLATION; FUNGUS; ISOSCHIZOMER; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REGULATORY MECHANISM; TECHNIQUE; USTILAGO MAYDIS; YARROWIA LIPOLYTICA;

DEOXYRIBONUCLEASE HPAII; DNA METHYLATION; DNA, FUNGAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EVALUATION STUDIES; MUCOR; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SACCHAROMYCETALES; USTILAGO;

EID: 0030889065     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050374     Document Type: Article

References (49)

1. Antequera F, Tamame M, Villanueva JR, Santos T (1985) Developmental modulation of DNA methylation in the fungus Phycomyces blakesleeanus. Nucleic Acids Res 13:6545-6558
2. Becker J, Vos P, Kuiper M, Salamini F, Heun M (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249:65-73
3. Ben-Hattar J, Jiricny J (1988) Methylation of single CpG dinucleotides within a promoter element of the Herpes simplex virus tk gene reduces its transcription in vivo. Gene 65:219-227
4. Busslinger M, Hurst J, Flavell RA (1983) DNA methylation and the regulation of globin gene expression, Cell 34;197-206
5. Buckner B, Novotny CP, Ulrich RC (1988) Developmental regulation of DNA methylation in the basidiomycete fungus Schizophyllum commune. Curr Genet 14:105-111
6. Cano C, Herrera-Estrella L, Ruiz-Herrera J (1988) DNA methylation and polyamines in the regulation of development of the fungus Mucor rouxii. J Bacteriol 170:5946-5948
7. Cano-Canchola C, Sosa L, Fonzi W, Sypherd P, Ruiz-Herrera J (1992) Developmental regulation of CUP gene expression through DNA methylation in Mucor spp. J Bacteriol 174:362-366
8. Doerfler W (1983) DNA methylation and gene activity. Annu Rev Biochem 52:93-124
9. Evans HH, Evans TE (1970) Methylation of the deoxyribonucleic acid of Physarum polycephalum at various periods during the mitotic cycle. J Biol Chem 245:6436-6441
10. Grigg G, Clark S (1994) Sequencing 5-methylcytosine residues in genomic DNA. BioEssays 16:431-436
11. Gruenbaum Y, Naveh-Many T, Cedar H, Razin A (1981) Sequence specificity of methylalion in higher plant DNA. Nature 292:860-862
12. Guevara-Olvera L, Calvo-Méndez C, Ruiz-Herrera J (1993) The role of polyamine metabolism in dimorphism of Yarrowia lipolytica. J Gen Microbiol 193:485-493
13. Goyon C, Faugeron G (1989) Targeted transformation of Ascobolus immersus and de novo methylation of the resulting duplicated DNA sequences. Mol Cell Biol 9:2819-2827
14. Holliday R (1961) The genetics of Ustilago maydis. Genet Res 2:204-230
15. Jablonka E, Goiten R, Marcus M, Cedar H (1985) DNA hypomethylation causes an increase in DNase 1 sensitivity and advance in the time of replication of the entire X chromosome. Chromosoma 93:152-156
16. Jones PA (1992) Methylation, mutation and cancer. BioEssays 14:33-36
17. Jupe ER, Magill JM, Magill CW (1986) Stage-specific DNA methylation in a fungal plant pathogen. J Bacteriol 165:420-423
18. Kass SU, Goddard JP, Adams RLP (1993) Inactive chromatin spreads from a focus of methylation. Mol Cell Biol 13:7372-7379
19. Langner K-D, Vardimon L, Renz D, Doerfler W (1984) DNA methylation of three 5′C-C-G-G3′ sites in the promoter and 5′ region inactivate the E2a gene of adenovirus type 2. Proc Natl Acad Sci USA 81:2950-2954
20. Lewis J, Bird AP (1991) DNA methylation and chromatin structure. FEBS Lett 285:155-159
21. Lewis JD, Meehan RR, Henzel WJ, Maurer-Fogy I, Jeppesen P, Klein F, Bird AP (1992) Purification, sequence and cellular localization of a novel protein that binds to methylated DNA. Cell 69:905-914
22. Li E, Bestor TH, Jaenisch R (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69:915-926
23. Li E, Beard D, Jaenisch R (1993) Role for DNA methylation in genomic imprinting. Nature 366:362-365
24. Magill JM, Magill CW (1989) DNA methylation in fungi. Dev Genet 10:63-99
25. McClelland M, Nelson M, Raschke E (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 22:3640-3659
26. Meehan RR, Lewis JD, McKay S, Kleiner EL, Bird AP (1989) Identification of a mammalian protein that hinds specifically to DNA containing methylated CpGs. Cell 58:499-507
27. Migeon BR (1994) X-chromosome inactivation: molecular mechanisms and genetic consequences. Trends Genet 10:230-235
28. Ngô V, Gourji D, Laverrière JN (1996) Site-specific methylation of the rat prolactin and growth hormone promoters correlates with gene expression. Mol Cell Biol 16:3245-3254
29. Raeder U, Broda P (1985) Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol 1:17-20
30. Razin A (1988) Assays for studying DNA methylation. In: Gelvin SB. Schilperoort RA (eds) Plant molecular biology manual Vol 3., B. Kluwer Academic Publishers. Boston. pp 163-198
31. Razin A, Cedar H (1991) DNA methylation and gene expression. Microbiol Rev 55:451-458
32. Razin A, Cedar H (1994) DNA methylation and genomic imprinting. Cell 77:473-476
33. Razin A, Webb C, Szyf M, Yisracli Y, Rosenthal A, Naveh-Many T, Sciaky-Gallili, Cedar H (1984) Varations in DNA methylation during mouse cell differentiation in vivo and in vitro. Proc Natl Acad Sci USA 81:2275-2279
34. Rhounim I., Rossignol J-L, Faugeron G (1992) Epimutation of repeated genes in Ascobolus immersus. EMBO J 11:4451-4457
35. Ruiz-Herrera J (1994) Polyamines. DNA methylation and fungal differentiation. Crit Rev Microbiol 20:143-150
36. Ruiz-Herrera J, Leon CG, Guevara-Olvera L, Carabez-Trejo A (1995) Yeast-mycelial dimorphism of haploid and diploid strains of Ustilago maydis. Microbiology 141:695-703
37. Russell PJ, Rodland KD, Cutler JE, Rachlin EM, McCloskey JA (1985) DNA methylation in Neurospora: chromatographic and isoschizomer evidence for chanaes during development. UCLA Symp Mol Cell Biol 34:321-332
38. Russell PJ, Rodland KD, Rachlin EM, McCloskey JA (1987a) differential DNA methylation during the vegetative life cycle of Neurospora crassa. J Bacteriol 169:2902-2905
39. Russell PJ, Welsch JA, Rachlin EM, McCloskey JA (1987b) Different levels of DNA methylation in yeast and mycelial forms of Candida albicans. J Bacteriol 169:4393-4395
40. 3 deficient mutant, and the role of mitochondria in dimorphism of Mucor rouxii. Exp Mycol 17:142-154
41. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
42. Selig SM, Ariel M, Goiten R, Marcus M, Cedar H (1988) Regulation of mouse satellite replication time. EMBO J 7:419-426
43. Selker EU (1990) DNA methylation and chromatic structure: a view from below. Trends Biochem Sci 15:103-107
44. Selker EU, Garrelt PW (1988) DNA sequence duplications trigger gene inactivation in N. crassa. Proc Natl Acad Sci USA 85:6870-6874
45. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M, Fijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AELP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
46. Walder RY, Langtimm CJ, Chaterjee R, Walder JA (1982) Cloning of the MspI modification enzyme. The site of modification and its effect on cleavage by MspI and Hpall. J Biol Chem 258: 1235-1241
47. Whittaker PA, Hardman N (1980) Methylation of nuclear DNA in Physarum polycephalum. Biochem J 191:859-862
48. Zabeau M, Vos P (1993) Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application number: 92402629.7, Publication number 0534 858 A1
49. Zolan M, Pukkila P (1985) DNA methylation in Coprinus cinereus. UCLA Symp Mol Cell Biol 6:195-200