-
1
-
-
2642557877
-
Teaching molecular 3-D literacy
-
10.1002/bmb.2002.494030010005
-
Richardson DC Richardson JS Teaching molecular 3-D literacy Biochem Molec Biol Educ 2002, 30:21-26. 10.1002/bmb.2002.494030010005
-
(2002)
Biochem Molec Biol Educ
, vol.30
, pp. 21-26
-
-
Richardson, D.C.1
Richardson, J.S.2
-
2
-
-
0015459748
-
Interactive computer graphics and representation of complex biological structures
-
4567757
-
Katz L Levinthal C Interactive computer graphics and representation of complex biological structures Ann Rev Biophys Bioengin 1972, 1:465-504. 4567757
-
(1972)
Ann Rev Biophys Bioengin
, vol.1
, pp. 465-504
-
-
Katz, L.1
Levinthal, C.2
-
3
-
-
84919025642
-
Spherical shading
-
Porter TK Spherical shading Computer Graphics 1978, 12:282-285.
-
(1978)
Computer Graphics
, vol.12
, pp. 282-285
-
-
Porter, T.K.1
-
5
-
-
0000356656
-
A graphics model building and refinement system for macromolecules
-
Jones TA A graphics model building and refinement system for macromolecules J Applied Crystallogr 1978, 11:268-272.
-
(1978)
J Applied Crystallogr
, vol.11
, pp. 268-272
-
-
Jones, T.A.1
-
6
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
6879170
-
Connolly ML Solvent-accessible surfaces of proteins and nucleic acids Science 1993, 221(4612):709-713. 6879170
-
(1993)
Science
, vol.221
, Issue.4612
, pp. 709-713
-
-
Connolly, M.L.1
-
7
-
-
0019443447
-
The Anatomy and Taxonomy of Protein Structure
-
7020376
-
Richardson JS The Anatomy and Taxonomy of Protein Structure Adv Prot Chem 1981, 34:167-339. http://kinemage.biochem.duke.edu/teaching/anatax/ 7020376
-
(1981)
Adv Prot Chem
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
8
-
-
0001037624
-
Algorithm for ribbon models of proteins
-
Carson WM Bugg CE Algorithm for ribbon models of proteins J Molec Graphics 1986, 4:121-122.
-
(1986)
J Molec Graphics
, vol.4
, pp. 121-122
-
-
Carson, W.M.1
Bugg, C.E.2
-
9
-
-
0027049243
-
The kinemage: A tool for scientific illustration
-
2142077 1304880
-
Richardson DC Richardson JS The kinemage: A tool for scientific illustration Protein Science 1992, 1:3-9. 2142077 1304880
-
(1992)
Protein Science
, vol.1
, pp. 3-9
-
-
Richardson, D.C.1
Richardson, J.S.2
-
10
-
-
0029119568
-
RASMOL: Biomolecular graphics for all
-
7482707
-
Sayle R Milner-White EJ RASMOL: Biomolecular graphics for all Trends Biochem Sci 1995, 20(9):374. 7482707
-
(1995)
Trends Biochem Sci
, vol.20
, Issue.9
, pp. 374
-
-
Sayle, R.1
Milner-White, E.J.2
-
12
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
9504803
-
Guex N Peitsch MC SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling Electrophoresis 1997, 18:2714-2723. 9504803
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
13
-
-
0037441653
-
Structure validation by Cα geometry: φ, ψ and Cβ deviation
-
12557186
-
Lovell SC Davis IW Arendall WB III de Bakker PIW Word JM Prisant MG Richardson JS Richardson DC Structure validation by Cα geometry: φ, ψ and Cβ deviation Proteins 2003, 50(3):437-450. 12557186
-
(2003)
Proteins
, vol.50
, Issue.3
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
de Bakker, P.I.W.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
14
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
15264254
-
Pettersen EF Goddard TD Huang CC Couch GS Greenblatt DM Meng EC Ferrin TE UCSF Chimera - A visualization system for exploratory research and analysis J Comput Chem 2004, 25:1605-1612. 15264254
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
15
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
8744573
-
Koradi R Billeter M Wüthrich K MOLMOL: A program for display and analysis of macromolecular structures J Mol Graphics 1996, 14(1):51-55. 8744573
-
(1996)
J Mol Graphics
, vol.14
, Issue.1
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
16
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
PART 1 15572765
-
Emsley P Cowtan K Coot: Model-building tools for molecular graphics Acta Crystallogr 2004, 60(Pt 12 Pt 1):2126-2132. 15572765
-
(2004)
Acta Crystallogr
, vol.60
, Issue.PART 12
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
19
-
-
62149095469
-
The PIT: Design, Implementation, and Next Steps
-
Ames, Iowa
-
Arthur K Preston T Taylor RM II Brooks FP Jr Whitton MC Wright WV The PIT: Design, Implementation, and Next Steps Proceedings of the 2nd International Immersive Projection Technology Workshop Ames, Iowa 1998.
-
(1998)
Proceedings of the 2nd International Immersive Projection Technology Workshop
-
-
Arthur, K.1
Preston, T.2
Taylor II, R.M.3
Brooks Jr., F.P.4
Whitton, M.C.5
Wright, W.V.6
-
20
-
-
0028204489
-
Sculpting proteins interactively: Continual energy minimization embedded in a graphical modeling system
-
2142792 8003957
-
Surles MC Richardson JS Richardson DC Brooks FP Jr Sculpting proteins interactively: Continual energy minimization embedded in a graphical modeling system Protein Sci 1994, 3:198-210. 2142792 8003957
-
(1994)
Protein Sci
, vol.3
, pp. 198-210
-
-
Surles, M.C.1
Richardson, J.S.2
Richardson, D.C.3
Brooks Jr., F.P.4
-
21
-
-
0027883482
-
The Nanomanipulator: A Virtual-Reality Interface for a Scanning Tunneling Microscope
-
Taylor RM II Robinett W Chi VL Brooks FP Jr Wright WV Williams RS Snyder EJ The Nanomanipulator: A Virtual-Reality Interface for a Scanning Tunneling Microscope ACM SIGGRAPH Proc 1993, 93:127-34.
-
(1993)
ACM SIGGRAPH Proc
, vol.93
, pp. 127-134
-
-
Taylor II, R.M.1
Robinett, W.2
Chi, V.L.3
Brooks Jr., F.P.4
Wright, W.V.5
Williams, R.S.6
Snyder, E.J.7
-
22
-
-
20844432026
-
Three-dimensional force microscope: A nanometric optical tracking and magnetic manipulation system for the biomedical sciences
-
Fisher J Cummings J Desai KV Vicci L Wilde B Keller K Weigle C Bishop G Taylor RM II Davis CW Boucher R O'Brien ET Superfine R Three-dimensional force microscope: A nanometric optical tracking and magnetic manipulation system for the biomedical sciences Rev Scientific Instruments 2005, 76:53711-22.
-
(2005)
Rev Scientific Instruments
, vol.76
, pp. 53711-53722
-
-
Fisher, J.1
Cummings, J.2
Desai, K.V.3
Vicci, L.4
Wilde, B.5
Keller, K.6
Weigle, C.7
Bishop, G.8
Taylor II, R.M.9
Davis, C.W.10
Boucher, R.11
O'Brien, E.T.12
Superfine, R.13
-
24
-
-
0027842683
-
Surround-screen projection-based virtual reality: The design and implementation of the CAVE
-
Cruz-Neira C Sandin D DeFanti T Surround-screen projection-based virtual reality: The design and implementation of the CAVE ACM SIGGRAPH Proc 1993, 93:135-142.
-
(1993)
ACM SIGGRAPH Proc
, vol.93
, pp. 135-142
-
-
Cruz-Neira, C.1
Sandin, D.2
DeFanti, T.3
-
25
-
-
62149097662
-
-
Sherman W FreeVR Home Page http://www.freevr.org
-
-
-
Sherman, W.1
-
26
-
-
62149108696
-
-
http://www.ks.uiuc.edu/Research/vmd/publications/uct2008vmdviz.pdf
-
Stone J VMD Publications http://www.ks.uiuc.edu/Research/vmd/ publications/cave2001.pdf http://www.ks.uiuc.edu/Research/vmd/ publications/uct2008vmdviz.pdf
-
-
-
Stone, J.1
-
29
-
-
62149140643
-
PDB in a CAVE: Virtual reality environment highlights PDB structures
-
PDB and CalIT2 PDB in a CAVE: Virtual reality environment highlights PDB structures PDB Newsletter spring 2006, 29:1.
-
(2006)
PDB Newsletter Spring
, vol.29
, pp. 1
-
-
-
30
-
-
62149127469
-
-
Jean Goldwurm 3D Visualization Theater http://www.weizmann.ac.il/ISPC/ 3dtheater/index.html
-
-
-
-
31
-
-
0033954256
-
The Protein Data Bank
-
102472 10592235
-
Berman HM Westbrook J Feng Z Gilliland G Bhat TN Weissig H Shindyalov IN Bourne PE The Protein Data Bank Nucleic Acids Res 2000, 28:235-242. 102472 10592235
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
0033613812
-
Visualizing and Quantitating Molecular Goodness-of-Fit: Small-probe Contact Dots with Explicit Hydrogen Atoms
-
9917407
-
Word JM Lovell SC LaBean TH Zalis ME Presley BK Richardson JS Richardson DC Visualizing and Quantitating Molecular Goodness-of-Fit: Small-probe Contact Dots with Explicit Hydrogen Atoms J Mol Biol 1999, 285:1711-1733. 9917407
-
(1999)
J Mol Biol
, vol.285
, pp. 1711-1733
-
-
Word, J.M.1
Lovell, S.C.2
LaBean, T.H.3
Zalis, M.E.4
Presley, B.K.5
Richardson, J.S.6
Richardson, D.C.7
-
34
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
1933162 17452350
-
Davis IW Leaver-Fay A Chen VB Block JN Kapral GJ Wang X Murray LW Arendall WB III Snoeyink J Richardson JS Richardson DC MolProbity: All-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res 2007, 35:W375-W383. 1933162 17452350
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall III, W.B.8
Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
35
-
-
21244482181
-
A test of enhancing model accuracy in high-throughput crystallography
-
15965733
-
Arendall WB III Tempel W Richardson JS Zhou W Wang S Davis IW Liu Z-J Rose JP Carson WM Luo M Richardson DC Wang B-C A test of enhancing model accuracy in high-throughput crystallography J Struct Funct Genomics 2005, 6:1-11. 15965733
-
(2005)
J Struct Funct Genomics
, vol.6
, pp. 1-11
-
-
Arendall III, W.B.1
Tempel, W.2
Richardson, J.S.3
Zhou, W.4
Wang, S.5
Davis, I.W.6
Liu, Z.-J.7
Rose, J.P.8
Carson, W.M.9
Luo, M.10
Richardson, D.C.11
Wang, B.-C.12
-
36
-
-
62149101153
-
AutoFix for backward-fit sidechains: Using MolProbity and real-space refinement to put misfits in their place
-
published on-line 11 November 2008 (open access) 19002604
-
Headd JJ Immormino RM Keedy DA Emsley P Richardson DC Richardson JS AutoFix for backward-fit sidechains: Using MolProbity and real-space refinement to put misfits in their place J Struct Funct Genomics 2008. published on-line 11 November 2008 (open access) 19002604
-
(2008)
J Struct Funct Genomics
-
-
Headd, J.J.1
Immormino, R.M.2
Keedy, D.A.3
Emsley, P.4
Richardson, D.C.5
Richardson, J.S.6
-
37
-
-
0013033189
-
MAGE, PROBE, and Kinemages
-
Dortrecht: Kluwer Academic Press Rossmann M, Arnold E
-
Richardson DC Richardson JS MAGE, PROBE, and Kinemages Chapter 25.2.8 in IUCr's International Tables for Crystallography, Volume F: Crystallography of Biological Macromolecules Dortrecht: Kluwer Academic Press Rossmann M, Arnold E 2001.
-
(2001)
Chapter 25.2.8 in IUCr's International Tables for Crystallography, Volume F: Crystallography of Biological Macromolecules
-
-
Richardson, D.C.1
Richardson, J.S.2
-
39
-
-
0035552038
-
VRPN: A device-independent, network-transparent VR peripheral system
-
Banff Centre, Canada. VRST
-
Taylor RM II Hudson TC Seeger A Weber H Juliano J Helser AT VRPN: A device-independent, network-transparent VR peripheral system Proceedings of the ACM Symposium on Virtual Reality Software & Technology: 2008 Banff Centre, Canada. VRST 2001.
-
(2001)
Proceedings of the ACM Symposium on Virtual Reality Software & Technology: 2008
-
-
Taylor II, R.M.1
Hudson, T.C.2
Seeger, A.3
Weber, H.4
Juliano, J.5
Helser, A.T.6
-
40
-
-
62149103443
-
-
Mechdyne http://www.mechdyne.com/integratedSolutions/software/products/ trackd/trackd.htm
-
-
-
-
42
-
-
0032528033
-
Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
-
Cornilescu G Marquardt JL Ottiger M Bax A Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase J Amer Chem Soc 1998, 120:6836-6837.
-
(1998)
J Amer Chem Soc
, vol.120
, pp. 6836-6837
-
-
Cornilescu, G.1
Marquardt, J.L.2
Ottiger, M.3
Bax, A.4
-
43
-
-
1642493921
-
Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data
-
2286702 14718654
-
Zheng D Aramini JM Montelione GT Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data Protein Sci 2004, 13:549-554. 2286702 14718654
-
(2004)
Protein Sci
, vol.13
, pp. 549-554
-
-
Zheng, D.1
Aramini, J.M.2
Montelione, G.T.3
-
44
-
-
33847338933
-
Structure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase eta
-
1808033 17304240
-
Bomar MG Pai MT Tzeng SR Li SS Zhou P Structure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase eta Embo Reports 2007, 8:247-251. 1808033 17304240
-
(2007)
Embo Reports
, vol.8
, pp. 247-251
-
-
Bomar, M.G.1
Pai, M.T.2
Tzeng, S.R.3
Li, S.S.4
Zhou, P.5
-
45
-
-
0033145058
-
Order matrix analysis of residual dipolar couplings using singular value decomposition
-
10341140
-
Losonczi JA Andrec M Fischer MWF Prestegard JH Order matrix analysis of residual dipolar couplings using singular value decomposition J Magn Reson 1999, 138(2):334-342. 10341140
-
(1999)
J Magn Reson
, vol.138
, Issue.2
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.F.3
Prestegard, J.H.4
-
46
-
-
13444283602
-
A probability-based similarity measure for Saupe alignment tensors with applications to residual dipolar couplings in NMR structural biology
-
Yan AK Langmead CJ Donald BR A probability-based similarity measure for Saupe alignment tensors with applications to residual dipolar couplings in NMR structural biology Internat J Robotics Res 2005, 24:165-182.
-
(2005)
Internat J Robotics Res
, vol.24
, pp. 165-182
-
-
Yan, A.K.1
Langmead, C.J.2
Donald, B.R.3
-
47
-
-
0036180645
-
Exact solutions for chemical bond orientations from residual dipolar couplings
-
11883775
-
Wedemeyer WJ Rohl CA Scheraga HA Exact solutions for chemical bond orientations from residual dipolar couplings J Biomolec NMR 2002, 22(2):137-151. 11883775
-
(2002)
J Biomolec NMR
, vol.22
, Issue.2
, pp. 137-151
-
-
Wedemeyer, W.J.1
Rohl, C.A.2
Scheraga, H.A.3
-
48
-
-
84967789667
-
Recent results in the field of liquid crystals
-
Saupe A Recent results in the field of liquid crystals Angewandte Chemie 1968, 7:97112.
-
(1968)
Angewandte Chemie
, vol.7
, pp. 97112
-
-
Saupe, A.1
-
50
-
-
13644252170
-
Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics
-
15701001
-
Huang YJ Powers R Montelione GT Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics J Am Chem Soc 2005, 127(6):1665-1674. 15701001
-
(2005)
J Am Chem Soc
, vol.127
, Issue.6
, pp. 1665-1674
-
-
Huang, Y.J.1
Powers, R.2
Montelione, G.T.3
|