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Volumn 141, Issue 1, 2009, Pages 34-46

Analysis of the leader proteinase (Lpro) region of type A foot-and-mouth disease virus with due emphasis on phylogeny and evolution of the emerging VP359-deletion lineage from India

Author keywords

Evolution; FMD virus; Leader proteinase; Phylogeny; Serotype A; VP359 deletion lineage

Indexed keywords

AMINO ACID; CAPSID PROTEIN; DIHYDROLIPOAMIDE DEHYDROGENASE; LEUCINE; PROTEIN VP3; PROTEINASE;

EID: 61749100210     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2008.12.012     Document Type: Article
Times cited : (8)

References (60)
  • 2
    • 0028923541 scopus 로고
    • Alignment/phylogeny of the papain superfamily of cysteine protease
    • Berti P.J., and Storer A.C. Alignment/phylogeny of the papain superfamily of cysteine protease. J. Mol. Biol. 246 (1995) 273-283
    • (1995) J. Mol. Biol. , vol.246 , pp. 273-283
    • Berti, P.J.1    Storer, A.C.2
  • 3
    • 0029897109 scopus 로고    scopus 로고
    • Pathogenesis of wild-type and leaderless foot-and-mouth disease virus in bovines
    • Brown C.C., Piccone M.E., Mason P.W., McKenna T.S.C., and Grubman M.J. Pathogenesis of wild-type and leaderless foot-and-mouth disease virus in bovines. J. Virol. 70 (1996) 5638-5641
    • (1996) J. Virol. , vol.70 , pp. 5638-5641
    • Brown, C.C.1    Piccone, M.E.2    Mason, P.W.3    McKenna, T.S.C.4    Grubman, M.J.5
  • 4
    • 0028908788 scopus 로고
    • Functional analysis of the two alternative translation initiation sites of foot-and-mouth disease virus
    • Cao X., Bergmann I.E., Fullkrug R., and Beck E. Functional analysis of the two alternative translation initiation sites of foot-and-mouth disease virus. J. Virol. 69 (1995) 560-563
    • (1995) J. Virol. , vol.69 , pp. 560-563
    • Cao, X.1    Bergmann, I.E.2    Fullkrug, R.3    Beck, E.4
  • 5
    • 35148863041 scopus 로고    scopus 로고
    • Genetic and phenotypic variation of foot-and-mouth disease virus during serial passages in a natural host
    • Carrillo C., Lu Z., Borca M.V., Vagnozzi A., Kutish G.F., and Rock D.L. Genetic and phenotypic variation of foot-and-mouth disease virus during serial passages in a natural host. J. Virol. 81 (2007) 11341-11351
    • (2007) J. Virol. , vol.81 , pp. 11341-11351
    • Carrillo, C.1    Lu, Z.2    Borca, M.V.3    Vagnozzi, A.4    Kutish, G.F.5    Rock, D.L.6
  • 7
    • 0035010933 scopus 로고    scopus 로고
    • Inhibition of L-deleted foot-and-mouth disease virus replication by alpha/beta interferon involves double-stranded RNA-dependent protein kinase
    • Chinsangaram J., Koster M., and Grubman M.J. Inhibition of L-deleted foot-and-mouth disease virus replication by alpha/beta interferon involves double-stranded RNA-dependent protein kinase. J. Virol. 75 (2001) 5498-5503
    • (2001) J. Virol. , vol.75 , pp. 5498-5503
    • Chinsangaram, J.1    Koster, M.2    Grubman, M.J.3
  • 8
    • 0029563023 scopus 로고
    • A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
    • Comeron J.M. A method for estimating the numbers of synonymous and nonsynonymous substitutions per site. J. Mol. Evol. 41 (1995) 1152-1159
    • (1995) J. Mol. Evol. , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 9
    • 0024110509 scopus 로고
    • Leader protein of foot-and-mouth disease virus is required for cleavage of the p220 component of the cap-binding complex
    • Devaney M.A., Vakharia V.N., Lloyd R.E., Ehrenfeld E., and Grubman M.J. Leader protein of foot-and-mouth disease virus is required for cleavage of the p220 component of the cap-binding complex. J. Virol. 62 (1988) 4407-4409
    • (1988) J. Virol. , vol.62 , pp. 4407-4409
    • Devaney, M.A.1    Vakharia, V.N.2    Lloyd, R.E.3    Ehrenfeld, E.4    Grubman, M.J.5
  • 11
    • 0035157361 scopus 로고    scopus 로고
    • Evidence of positive selection in the capsid protein coding region of the foot-and-mouth disease virus (FMDV) subjected to experimental passage regimens
    • Fares M.A., Moya A., Escarmis C., Baranowski E., Domingo E., and Barrio E. Evidence of positive selection in the capsid protein coding region of the foot-and-mouth disease virus (FMDV) subjected to experimental passage regimens. Mol. Biol. Evol. 18 (2001) 10-21
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 10-21
    • Fares, M.A.1    Moya, A.2    Escarmis, C.3    Baranowski, E.4    Domingo, E.5    Barrio, E.6
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
    • 0034956798 scopus 로고    scopus 로고
    • The non-structural leader protein gene of foot-and-mouth disease virus is highly variable between serotypes
    • George M., Venkataramanan R., Gurumurthy C.B., and Hemadri D. The non-structural leader protein gene of foot-and-mouth disease virus is highly variable between serotypes. Virus Genes 22 (2001) 271-278
    • (2001) Virus Genes , vol.22 , pp. 271-278
    • George, M.1    Venkataramanan, R.2    Gurumurthy, C.B.3    Hemadri, D.4
  • 14
    • 0028168856 scopus 로고
    • Codon-based model of nucleotide substitution for protein-coding DNA-sequences
    • Goldman N., and Yang Z.H. Codon-based model of nucleotide substitution for protein-coding DNA-sequences. Mol. Biol. Evol. 11 (1994) 725-736
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.H.2
  • 15
    • 0025739985 scopus 로고
    • Putative papain-related thiol proteases of positive strand RNA viruses. Identification of rubi- and apthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha-, and coronaviruses
    • Gorbalenya A.E., Koonin E.V., and Lai M.M. Putative papain-related thiol proteases of positive strand RNA viruses. Identification of rubi- and apthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha-, and coronaviruses. FEBS Lett. 288 (1991) 201-205
    • (1991) FEBS Lett. , vol.288 , pp. 201-205
    • Gorbalenya, A.E.1    Koonin, E.V.2    Lai, M.M.3
  • 16
    • 0034613018 scopus 로고    scopus 로고
    • Structural and biochemical features distinguish the foot-and-mouth disease virus leader proteinase from other papain-like enzymes
    • Guarne A., Hampoelz B., Glaser W., Carpena X., Tormo J., Fita I., and Skern T. Structural and biochemical features distinguish the foot-and-mouth disease virus leader proteinase from other papain-like enzymes. J. Mol. Biol. 302 (2000) 1227-1240
    • (2000) J. Mol. Biol. , vol.302 , pp. 1227-1240
    • Guarne, A.1    Hampoelz, B.2    Glaser, W.3    Carpena, X.4    Tormo, J.5    Fita, I.6    Skern, T.7
  • 17
    • 0032534805 scopus 로고    scopus 로고
    • Structure of the foot-and-mouth disease virus leader protease: a papain-like fold adapted for self-processing and eIF4G recognition
    • Guarné A., Tormo J., Kirchweger R., Pfistermueller D., Fita I., and Skern T. Structure of the foot-and-mouth disease virus leader protease: a papain-like fold adapted for self-processing and eIF4G recognition. EMBO J. 17 (1998) 7469-7479
    • (1998) EMBO J. , vol.17 , pp. 7469-7479
    • Guarné, A.1    Tormo, J.2    Kirchweger, R.3    Pfistermueller, D.4    Fita, I.5    Skern, T.6
  • 18
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • Heath L., van der Walt E., Varsani A., and Martin D.P. Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J. Virol. 80 (2006) 11827-11832
    • (2006) J. Virol. , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 19
    • 0036936856 scopus 로고    scopus 로고
    • Conservation of L and 3C proteinase activities across distantly related aphthoviruses
    • Hinton T., Ross-Smith N., Warner S., Belsham G., and Crabb B. Conservation of L and 3C proteinase activities across distantly related aphthoviruses. J. Gen. Virol. 83 (2002) 3111-3121
    • (2002) J. Gen. Virol. , vol.83 , pp. 3111-3121
    • Hinton, T.1    Ross-Smith, N.2    Warner, S.3    Belsham, G.4    Crabb, B.5
  • 20
    • 0025147562 scopus 로고
    • Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class 1 major-histocompatibility-complex molecules
    • Hughes A.L., Ota T., and Nei M. Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class 1 major-histocompatibility-complex molecules. Mol. Biol. Evol. 7 (1990) 515-524
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 515-524
    • Hughes, A.L.1    Ota, T.2    Nei, M.3
  • 21
    • 22044456847 scopus 로고    scopus 로고
    • Antigenic and genetic analyses of foot-and-mouth disease virus type A isolates for selection of candidate strain reveals emergence of a variant virus that is responsible for most recent outbreaks in India
    • Jangra R.K., Tosh C., Sanyal A., Hemadri D., and Bandyopadhyay S.K. Antigenic and genetic analyses of foot-and-mouth disease virus type A isolates for selection of candidate strain reveals emergence of a variant virus that is responsible for most recent outbreaks in India. Virus Res. 112 (2005) 52-59
    • (2005) Virus Res. , vol.112 , pp. 52-59
    • Jangra, R.K.1    Tosh, C.2    Sanyal, A.3    Hemadri, D.4    Bandyopadhyay, S.K.5
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 38149063512 scopus 로고    scopus 로고
    • Genetic characterization of the recent foot-and-mouth disease virus sub-type A/IRN/2005
    • Klein J., Hussain M., Ahmad M., Normann P., Afzal M., and Alexandersen S. Genetic characterization of the recent foot-and-mouth disease virus sub-type A/IRN/2005. Virol. J. 4 November (2007) 122
    • (2007) Virol. J. , vol.4 , Issue.November , pp. 122
    • Klein, J.1    Hussain, M.2    Ahmad, M.3    Normann, P.4    Afzal, M.5    Alexandersen, S.6
  • 24
    • 61749096942 scopus 로고    scopus 로고
    • Knowles, N.J., Samuel, A.R., 1995. Polymerase chain reaction amplification and cycle sequencing of the 1D (VP1) gene of foot-and-mouth disease viruses. Rpt. Sess. Res. Gp. Stand. Tech. Comm. Eur. Comm. Control of FMD (FAO), Vienna, Austria, September 1994, pp. 45-53.
    • Knowles, N.J., Samuel, A.R., 1995. Polymerase chain reaction amplification and cycle sequencing of the 1D (VP1) gene of foot-and-mouth disease viruses. Rpt. Sess. Res. Gp. Stand. Tech. Comm. Eur. Comm. Control of FMD (FAO), Vienna, Austria, September 1994, pp. 45-53.
  • 25
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Kosakovsky Pond S.L., and Frost S.D.W. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21 10 (2005) 2531-2533
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 26
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li W.H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36 (1993) 96-99
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.H.1
  • 27
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li W.H., Wu C.I., and Luo C.C. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2 (1985) 150-174
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 28
    • 2542509984 scopus 로고    scopus 로고
    • Involvement of the aphthovirus RNA region located between the two functional AUGs in atrat codoc selection
    • Lopez de Quinto S., and Martinez-Salas E. Involvement of the aphthovirus RNA region located between the two functional AUGs in atrat codoc selection. Virology 255 (1999) 324-336
    • (1999) Virology , vol.255 , pp. 324-336
    • Lopez de Quinto, S.1    Martinez-Salas, E.2
  • 29
    • 0033623486 scopus 로고    scopus 로고
    • Interaction of the eIF4G Initiation factor with the apthovirus IRES is essential for internal translation initiation in vivo
    • Lopez de Quinto S., and Martinez-Salas E. Interaction of the eIF4G Initiation factor with the apthovirus IRES is essential for internal translation initiation in vivo. RNA 6 (2000) 1380-1392
    • (2000) RNA , vol.6 , pp. 1380-1392
    • Lopez de Quinto, S.1    Martinez-Salas, E.2
  • 30
    • 0027275622 scopus 로고
    • The two species of the foot-and-mouth-disease virus leader protein, expressed individually, exhibit the same activities
    • Medina M., Domingo E., Brangwyn J.K., and Belsham G.J. The two species of the foot-and-mouth-disease virus leader protein, expressed individually, exhibit the same activities. Virology 194 (1993) 355-359
    • (1993) Virology , vol.194 , pp. 355-359
    • Medina, M.1    Domingo, E.2    Brangwyn, J.K.3    Belsham, G.J.4
  • 31
    • 17644417855 scopus 로고    scopus 로고
    • Phylogeny, genome evolution, and antigenic variability among endemic foot-and-mouth disease virus type A isolates from India
    • Mittal M., Tosh C., Hemadri D., Sanyal A., and Bandyopadhyay S.K. Phylogeny, genome evolution, and antigenic variability among endemic foot-and-mouth disease virus type A isolates from India. Arch. Virol. 150 (2005) 911-928
    • (2005) Arch. Virol. , vol.150 , pp. 911-928
    • Mittal, M.1    Tosh, C.2    Hemadri, D.3    Sanyal, A.4    Bandyopadhyay, S.K.5
  • 33
    • 46249087034 scopus 로고    scopus 로고
    • Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades
    • Mohapatra J.K., Sanyal A., Hemadri D., Tosh C., Biswas S., Rasool T.J., Bandyopadhyay S.K., and Pattnaik B. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (2008) 16-29
    • (2008) Virus Res. , vol.136 , pp. 16-29
    • Mohapatra, J.K.1    Sanyal, A.2    Hemadri, D.3    Tosh, C.4    Biswas, S.5    Rasool, T.J.6    Bandyopadhyay, S.K.7    Pattnaik, B.8
  • 34
    • 0036674719 scopus 로고    scopus 로고
    • Sequence and phylogenetic analysis of the L and VP1 genes of foot-and-mouth disease virus serotype Asia 1
    • Mohapatra J.K., Sanyal A., Hemadri D., Tosh C., Sabarinath G.P., and Venkataramanan R. Sequence and phylogenetic analysis of the L and VP1 genes of foot-and-mouth disease virus serotype Asia 1. Virus Res. 87 (2002) 107-118
    • (2002) Virus Res. , vol.87 , pp. 107-118
    • Mohapatra, J.K.1    Sanyal, A.2    Hemadri, D.3    Tosh, C.4    Sabarinath, G.P.5    Venkataramanan, R.6
  • 35
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • Muse S.V., and Gaut B.S. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol. Biol. Evol. 11 (1994) 715-724
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 36
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M., and Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3 (1986) 418-426
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 37
    • 0027533924 scopus 로고
    • Evolution of the zfx and zfy genes-rates and interdependence between the genes
    • Pamilo P., and Bianchi N.O. Evolution of the zfx and zfy genes-rates and interdependence between the genes. Mol. Biol. Evol. 10 (1993) 271-281
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 38
    • 0029122520 scopus 로고
    • The foot-and-mouth disease virus leader proteinase gene is not required for viral replication
    • Piccone M.E., Rieder E., Mason P.W., and Grubman M.J. The foot-and-mouth disease virus leader proteinase gene is not required for viral replication. J. Virol. 69 (1995) 5376-5382
    • (1995) J. Virol. , vol.69 , pp. 5376-5382
    • Piccone, M.E.1    Rieder, E.2    Mason, P.W.3    Grubman, M.J.4
  • 39
    • 0029034840 scopus 로고
    • Identification of the active-site residues of the L proteinase of foot-and-mouth disease virus
    • Piccone M.E., Zellner M., Kumosinski T.F., Mason P.W., and Grubman M.J. Identification of the active-site residues of the L proteinase of foot-and-mouth disease virus. J. Virol. 69 (1995) 4950-4956
    • (1995) J. Virol. , vol.69 , pp. 4950-4956
    • Piccone, M.E.1    Zellner, M.2    Kumosinski, T.F.3    Mason, P.W.4    Grubman, M.J.5
  • 40
    • 61749099331 scopus 로고    scopus 로고
    • Ray, S.C, 1999. SimPlot for Windows 95, version 2.5. Distributed by the author 641
    • Ray, S.C., 1999. SimPlot for Windows 95, version 2.5. Distributed by the author 641 (www.med.jhu.edu/deptmed/sray/download).
  • 41
    • 0028884251 scopus 로고
    • Identification of critical amino acids with the foot-and-mouth disease Leader protein, a cystein protease
    • Roberts P.J., and Belsham G. Identification of critical amino acids with the foot-and-mouth disease Leader protein, a cystein protease. Virology 213 (1995) 140-146
    • (1995) Virology , vol.213 , pp. 140-146
    • Roberts, P.J.1    Belsham, G.2
  • 43
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. 4 (1987) 406-425
    • (1987) Mol. Biol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 44
    • 0023663461 scopus 로고
    • All foot and mouth disease virus serotypes initiate protein synthesis at two separate AUGs
    • Sangar D.V., Newton S.E., Rowlands D.J., and Clarke B.E. All foot and mouth disease virus serotypes initiate protein synthesis at two separate AUGs. Nucleic Acids Res. 15 (1987) 3305-3315
    • (1987) Nucleic Acids Res. , vol.15 , pp. 3305-3315
    • Sangar, D.V.1    Newton, S.E.2    Rowlands, D.J.3    Clarke, B.E.4
  • 45
    • 33750742813 scopus 로고    scopus 로고
    • Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses
    • Simmonds P. Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses. J. Virol. 80 (2006) 11124-11140
    • (2006) J. Virol. , vol.80 , pp. 11124-11140
    • Simmonds, P.1
  • 46
    • 0031975650 scopus 로고    scopus 로고
    • A structural model of picornavirus leader proteases based on papain and bleomycin hydrolase
    • Skern T., Fita I., and Guarne A. A structural model of picornavirus leader proteases based on papain and bleomycin hydrolase. J. Gen. Virol. 79 (1998) 301-307
    • (1998) J. Gen. Virol. , vol.79 , pp. 301-307
    • Skern, T.1    Fita, I.2    Guarne, A.3
  • 48
    • 0022453797 scopus 로고
    • A second protease of foot-and-mouth disease virus
    • Strebel K., and Beck E. A second protease of foot-and-mouth disease virus. J. Virol. 58 (1986) 893-899
    • (1986) J. Virol. , vol.58 , pp. 893-899
    • Strebel, K.1    Beck, E.2
  • 49
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. (2007) 10.1093/molbev/msm092
    • (2007) Mol. Biol. Evol.
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 50
    • 0036790028 scopus 로고    scopus 로고
    • Evolutionary distance estimation under heterogeneous substitution pattern among lineages
    • Tamura K., and Kumar S. Evolutionary distance estimation under heterogeneous substitution pattern among lineages. Mol. Biol. Evol. 19 (2002) 1727-1736
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1727-1736
    • Tamura, K.1    Kumar, S.2
  • 51
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., and Nei M. Estimation of the number of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 52
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 53
    • 1542350824 scopus 로고    scopus 로고
    • Molecular phylogeny of leader proteinase gene of type A of foot-and-mouth disease virus from India
    • Tosh C., Mittal M., Sanyal A., Hemadri D., and Bandyopadhyay S.K. Molecular phylogeny of leader proteinase gene of type A of foot-and-mouth disease virus from India. Arch. Virol. 149 (2004) 523-536
    • (2004) Arch. Virol. , vol.149 , pp. 523-536
    • Tosh, C.1    Mittal, M.2    Sanyal, A.3    Hemadri, D.4    Bandyopadhyay, S.K.5
  • 54
    • 0036008608 scopus 로고    scopus 로고
    • Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000
    • Tosh C., Sanyal A., Hemadri D., and Venkataraman R. Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000. Arch. Virol. 147 (2002) 493-513
    • (2002) Arch. Virol. , vol.147 , pp. 493-513
    • Tosh, C.1    Sanyal, A.2    Hemadri, D.3    Venkataraman, R.4
  • 55
    • 0036572286 scopus 로고    scopus 로고
    • Genetic heterogeneity in the foot-and-mouth disease virus leader and 3C proteinases
    • Van Rensberg H., Haydon D., Joubert F., Bastos A., and Heath L. Genetic heterogeneity in the foot-and-mouth disease virus leader and 3C proteinases. Gene 289 (2002) 19-29
    • (2002) Gene , vol.289 , pp. 19-29
    • Van Rensberg, H.1    Haydon, D.2    Joubert, F.3    Bastos, A.4    Heath, L.5
  • 56
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: (2007). Phylogenetic analysis by maximum likelihood
    • Yang Z.H. PAML 4: (2007). Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24 (2007) 1586-1591
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.H.1
  • 57
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z.H., Nielsen R., Goldman N., and Pedersen A.M.K. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 (2000) 431-449
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.H.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.K.4
  • 59
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang J., Rosenberg H.F., and Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. U.S.A. 95 (1998) 3708-3713
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 60
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide in RNA biochemistry and biotechnology
    • Barciszewski J., and Clark B.F.C. (Eds), Kluwer Academic Publishers
    • Zuker M., Mathews D.H., and Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide in RNA biochemistry and biotechnology. In: Barciszewski J., and Clark B.F.C. (Eds). NATO ASI Series (1999), Kluwer Academic Publishers
    • (1999) NATO ASI Series
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.