메뉴 건너뛰기




Volumn 155, Issue 1, 2009, Pages 150-164

Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; PERMEASE; PROTEIN RBSR; PROTEIN URIR; RECEPTOR PROTEIN; REGULATOR PROTEIN; RIBOKINASE; RIBOKINASE 1; RIBOKINASE 2; RIBOSE; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; DNA BINDING PROTEIN; RBSR PROTEIN, BACTERIA; REPRESSOR PROTEIN;

EID: 61449214227     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.020388-0     Document Type: Article
Times cited : (34)

References (49)
  • 2
    • 44349107696 scopus 로고    scopus 로고
    • The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to carbon responsive element-like sequences
    • Brinkrolf, K., Plöger, S., Sandra, S., Brune, I., Nentwich, S. S., Hüser, A. T., Kalinowski, J., Pühler, A. & Tauch, A. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to carbon responsive element-like sequences. Microbiology 154, 1068-1081.
    • (2008) Microbiology , vol.154 , pp. 1068-1081
    • Brinkrolf, K.1    Plöger, S.2    Sandra, S.3    Brune, I.4    Nentwich, S.S.5    Hüser, A.T.6    Kalinowski, J.7    Pühler, A.8    Tauch, A.9
  • 3
    • 25444441531 scopus 로고    scopus 로고
    • The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences
    • Brune, I., Brinkrolf, K., Kalinowski, J., Pühler, A. & Tauch, A. (2005). The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics 6, 86.
    • (2005) BMC Genomics , vol.6 , pp. 86
    • Brune, I.1    Brinkrolf, K.2    Kalinowski, J.3    Pühler, A.4    Tauch, A.5
  • 4
    • 34249951731 scopus 로고    scopus 로고
    • Structural analysis of Lac repressor bound to allosteric effectors
    • Daber, R., Tayrook, S., Rosenberg, A. & Lewis, M. (2007). Structural analysis of Lac repressor bound to allosteric effectors. J Mol Biol 370, 609-619.
    • (2007) J Mol Biol , vol.370 , pp. 609-619
    • Daber, R.1    Tayrook, S.2    Rosenberg, A.3    Lewis, M.4
  • 7
    • 37349123170 scopus 로고    scopus 로고
    • Co-ordinated regulation of gluconate catabolism and glucose uptake in Corynebacterium glutamicum by two functionally equivalent transcriptional regulators, GntR1 and GntR2
    • Frunzke, J., Engels, V., Hasenbein, S., Gätgens, C. & Bott, M. (2008). Co-ordinated regulation of gluconate catabolism and glucose uptake in Corynebacterium glutamicum by two functionally equivalent transcriptional regulators, GntR1 and GntR2. Mol Microbiol 67, 305-322.
    • (2008) Mol Microbiol , vol.67 , pp. 305-322
    • Frunzke, J.1    Engels, V.2    Hasenbein, S.3    Gätgens, C.4    Bott, M.5
  • 8
    • 0037329109 scopus 로고    scopus 로고
    • Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins
    • Fukami-Kobayashi, K., Tateno, Y. & Nishikawa, K. (2003). Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins. Mol Biol Evol 20, 267-277.
    • (2003) Mol Biol Evol , vol.20 , pp. 267-277
    • Fukami-Kobayashi, K.1    Tateno, Y.2    Nishikawa, K.3
  • 9
    • 0041429540 scopus 로고    scopus 로고
    • Industrial production of amino acids by coryneform bacteria
    • Hermann, T. (2003). Industrial production of amino acids by coryneform bacteria. J Biotechnol 104, 155-172.
    • (2003) J Biotechnol , vol.104 , pp. 155-172
    • Hermann, T.1
  • 10
    • 0035019469 scopus 로고    scopus 로고
    • ABC transporters: Physiology, structure and mechanism - an overview
    • Higgins, C. F. (2001). ABC transporters: physiology, structure and mechanism - an overview. Res Microbiol 152, 205-210.
    • (2001) Res Microbiol , vol.152 , pp. 205-210
    • Higgins, C.F.1
  • 12
    • 0024556150 scopus 로고
    • Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
    • Horton, R. M., Hunt, H. D., Ho, S. N., Pullen, J. K. & Pease, L. R. (1989). Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77, 61-68.
    • (1989) Gene , vol.77 , pp. 61-68
    • Horton, R.M.1    Hunt, H.D.2    Ho, S.N.3    Pullen, J.K.4    Pease, L.R.5
  • 13
    • 0028086366 scopus 로고
    • Analysis of a cis-active sequence mediating catabolite repression in Gram-positive bacteria
    • Hueck, C. J., Hillen, W. & Saier, M. H., Jr (1994). Analysis of a cis-active sequence mediating catabolite repression in Gram-positive bacteria. Res Microbiol 145, 503-518.
    • (1994) Res Microbiol , vol.145 , pp. 503-518
    • Hueck, C.J.1    Hillen, W.2    Saier Jr, M.H.3
  • 14
    • 0345359589 scopus 로고    scopus 로고
    • Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source
    • Hüser, A. T., Becker, A., Brune, I., Dondrup, M., Kalinowski, J., Plassmeier, J., Pühler, A., Wiegräbe, I. & Tauch, A. (2003). Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. J Biotechnol 106, 269-286.
    • (2003) J Biotechnol , vol.106 , pp. 269-286
    • Hüser, A.T.1    Becker, A.2    Brune, I.3    Dondrup, M.4    Kalinowski, J.5    Plassmeier, J.6    Pühler, A.7    Wiegräbe, I.8    Tauch, A.9
  • 15
    • 12444259324 scopus 로고    scopus 로고
    • Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J. & other authors (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J Biotechnol 104, 5-25.
    • Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J. & other authors (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J Biotechnol 104, 5-25.
  • 16
    • 0021278824 scopus 로고
    • Protoplast transformation of glutamate-producing bacteria with plasmid DNA
    • Katsumata, R., Ozaki, A., Oka, T. & Furuya, A. (1984). Protoplast transformation of glutamate-producing bacteria with plasmid DNA. J Bacteriol 159, 306-311.
    • (1984) J Bacteriol , vol.159 , pp. 306-311
    • Katsumata, R.1    Ozaki, A.2    Oka, T.3    Furuya, A.4
  • 17
    • 84987620027 scopus 로고    scopus 로고
    • L-Lysine production
    • Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press
    • Kelle, R., Hermann, T. & Bathe, B. (2005). L-Lysine production. In Handbook of Corynebacterium glutamicum, pp. 465-488. Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press.
    • (2005) Handbook of Corynebacterium glutamicum , pp. 465-488
    • Kelle, R.1    Hermann, T.2    Bathe, B.3
  • 18
    • 84991906038 scopus 로고    scopus 로고
    • L-Glutamate production
    • Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press
    • Kimura, E. (2005). L-Glutamate production. In Handbook of Corynebacterium glutamicum, pp. 439-463. Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press.
    • (2005) Handbook of Corynebacterium glutamicum , pp. 439-463
    • Kimura, E.1
  • 19
    • 0031738688 scopus 로고    scopus 로고
    • Identification of a co-repressor binding site in catabolite control protein CcpA
    • Kraus, A., Küster, E., Wagner, A., Hoffmann, K. & Hillen, W. (1998). Identification of a co-repressor binding site in catabolite control protein CcpA. Mol Microbiol 30, 955-963.
    • (1998) Mol Microbiol , vol.30 , pp. 955-963
    • Kraus, A.1    Küster, E.2    Wagner, A.3    Hoffmann, K.4    Hillen, W.5
  • 21
    • 85048728548 scopus 로고    scopus 로고
    • Corynebacterium taxonomy
    • Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press
    • Liebl, W. (2005). Corynebacterium taxonomy. In Handbook of Corynebacterium glutamicum, pp. 9-34. Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press.
    • (2005) Handbook of Corynebacterium glutamicum , pp. 9-34
    • Liebl, W.1
  • 22
    • 0021364453 scopus 로고
    • D-Ribose metabolism in Escherichia coli K-12: Genetics, regulation, and transport
    • Lopilato, J. E., Garwin, J. L., Emr, S. D., Silhavy, T. J. & Beckwith, J. R. (1984). D-Ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport. J Bacteriol 158, 665-673.
    • (1984) J Bacteriol , vol.158 , pp. 665-673
    • Lopilato, J.E.1    Garwin, J.L.2    Emr, S.D.3    Silhavy, T.J.4    Beckwith, J.R.5
  • 23
    • 0037440734 scopus 로고    scopus 로고
    • Evolution of transcription factors and the gene regulatory network in Escherichia coli
    • Madan Babu, M. & Teichmann, S. A. (2003a). Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res 31, 1234-1244.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1234-1244
    • Madan Babu, M.1    Teichmann, S.A.2
  • 24
    • 0037303198 scopus 로고    scopus 로고
    • Functional determinants of transcription factors in Escherichia coli: Protein families and binding sites
    • Madan Babu, M. & Teichmann, S. A. (2003b). Functional determinants of transcription factors in Escherichia coli: protein families and binding sites. Trends Genet 19, 75-79.
    • (2003) Trends Genet , vol.19 , pp. 75-79
    • Madan Babu, M.1    Teichmann, S.A.2
  • 25
    • 0037252683 scopus 로고    scopus 로고
    • Marchler-Bauer, A., Anderson, J. B., DeWeese-Scott, C., Fedorova, N. D., Geer, L. Y., He, S., Hurwitz, D. I., Jackson, J. D., Jacobs, A. R. & other authors (2003). CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res 31, 383-387.
    • Marchler-Bauer, A., Anderson, J. B., DeWeese-Scott, C., Fedorova, N. D., Geer, L. Y., He, S., Hurwitz, D. I., Jackson, J. D., Jacobs, A. R. & other authors (2003). CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res 31, 383-387.
  • 26
    • 0027087375 scopus 로고
    • Structural and functional analyses of the repressor, RbsR, of the ribose operon of Escherichia coli
    • Mauzy, C. A. & Hermodson, M. A. (1992). Structural and functional analyses of the repressor, RbsR, of the ribose operon of Escherichia coli. Protein Sci 1, 831-842.
    • (1992) Protein Sci , vol.1 , pp. 831-842
    • Mauzy, C.A.1    Hermodson, M.A.2
  • 27
    • 0027050193 scopus 로고
    • Structural homology between rbs repressor and ribose binding protein implies functional similarity
    • Mauzy, C. A. & Hermodson, M. A. (1992). Structural homology between rbs repressor and ribose binding protein implies functional similarity. Protein Sci 1, 843-849.
    • (1992) Protein Sci , vol.1 , pp. 843-849
    • Mauzy, C.A.1    Hermodson, M.A.2
  • 28
    • 33644772777 scopus 로고    scopus 로고
    • The transcription regulator RbsR represents a novel interaction partner of the phosphoprotein HPr-Ser46-P in Bacillus subtilis
    • Müller, W., Horstmann, N., Hillen, W. & Sticht, H. (2006). The transcription regulator RbsR represents a novel interaction partner of the phosphoprotein HPr-Ser46-P in Bacillus subtilis. FEBS J 273, 1251-1261.
    • (2006) FEBS J , vol.273 , pp. 1251-1261
    • Müller, W.1    Horstmann, N.2    Hillen, W.3    Sticht, H.4
  • 29
    • 0029609722 scopus 로고
    • Phylogenetic, structural and functional analyses of the LacI-GalR family of bacterial transcription factors
    • Nguyen, C. C. & Saier, M. H., Jr (1995). Phylogenetic, structural and functional analyses of the LacI-GalR family of bacterial transcription factors. FEBS Lett 377, 98-102.
    • (1995) FEBS Lett , vol.377 , pp. 98-102
    • Nguyen, C.C.1    Saier Jr, M.H.2
  • 33
    • 0343963178 scopus 로고    scopus 로고
    • The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
    • Pérez-Rueda, E. & Collado-Vides, J. (2000). The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Nucleic Acids Res 28, 1838-1847.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1838-1847
    • Pérez-Rueda, E.1    Collado-Vides, J.2
  • 34
    • 13944268797 scopus 로고    scopus 로고
    • A novel method for accurate operon predictions in all sequenced prokaryotes
    • Price, M. N., Huang, K. H., Alm, E. J. & Arkin, A. P. (2005). A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res 33, 880-892.
    • (2005) Nucleic Acids Res , vol.33 , pp. 880-892
    • Price, M.N.1    Huang, K.H.2    Alm, E.J.3    Arkin, A.P.4
  • 35
    • 18444409651 scopus 로고    scopus 로고
    • The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032
    • Rey, D. A., Nentwich, S. S., Koch, D. J., Rückert, C., Pühler, A., Tauch, A. & Kalinowski, J. (2005). The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. Mol Microbiol 56, 871-887.
    • (2005) Mol Microbiol , vol.56 , pp. 871-887
    • Rey, D.A.1    Nentwich, S.S.2    Koch, D.J.3    Rückert, C.4    Pühler, A.5    Tauch, A.6    Kalinowski, J.7
  • 36
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice, P., Longden, I. & Bleasby, A. (2000). EMBOSS: the European molecular biology open software suite. Trends Genet 16, 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 37
    • 23744503051 scopus 로고    scopus 로고
    • Phosphate starvation-inducible gene ushA encodes a 5′ nucleotidase required for growth of Corynebacterium glutamicum on media with nucleotides as the phosphorus source
    • Rittmann, D., Sorger-Hermann, U. & Wendisch, V. F. (2005). Phosphate starvation-inducible gene ushA encodes a 5′ nucleotidase required for growth of Corynebacterium glutamicum on media with nucleotides as the phosphorus source. Appl Environ Microbiol 71, 4339-4344.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4339-4344
    • Rittmann, D.1    Sorger-Hermann, U.2    Wendisch, V.F.3
  • 38
    • 0035910178 scopus 로고    scopus 로고
    • Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
    • Rodionov, D. A., Mironov, A. A. & Gelfand, M. S. (2001). Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol Lett 205, 305-314.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 305-314
    • Rodionov, D.A.1    Mironov, A.A.2    Gelfand, M.S.3
  • 39
    • 2942623617 scopus 로고    scopus 로고
    • NMR application probes a novel and ubiquitous family of enzymes that alter monosaccharide configuration
    • Ryu, K. S., Kim, C., Kim, I., Yoo, S., Choi, B. S. & Park, C. (2004). NMR application probes a novel and ubiquitous family of enzymes that alter monosaccharide configuration. J Biol Chem 279, 25544-25548.
    • (2004) J Biol Chem , vol.279 , pp. 25544-25548
    • Ryu, K.S.1    Kim, C.2    Kim, I.3    Yoo, S.4    Choi, B.S.5    Park, C.6
  • 41
    • 0028289983 scopus 로고
    • Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: Selection of defined deletions in the chromosome of Corynebacterium glutamicum
    • Schäfer, A., Tauch, A., Jäger, W., Kalinowski, J., Thierbach, G. & Pühler, A. (1994). Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145, 69-73.
    • (1994) Gene , vol.145 , pp. 69-73
    • Schäfer, A.1    Tauch, A.2    Jäger, W.3    Kalinowski, J.4    Thierbach, G.5    Pühler, A.6
  • 42
    • 0028051630 scopus 로고
    • Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli
    • Tauch, A., Kirchner, O., Wehmeier, L., Kalinowski, J. & Pühler, A. (1994). Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli. FEMS Microbiol Lett 123, 343-347.
    • (1994) FEMS Microbiol Lett , vol.123 , pp. 343-347
    • Tauch, A.1    Kirchner, O.2    Wehmeier, L.3    Kalinowski, J.4    Pühler, A.5
  • 43
    • 0029133105 scopus 로고
    • The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX
    • Tauch, A., Kassing, F., Kalinowski, J. & Puhler, A. (1995). The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX. Plasmid 34, 119-131.
    • (1995) Plasmid , vol.34 , pp. 119-131
    • Tauch, A.1    Kassing, F.2    Kalinowski, J.3    Puhler, A.4
  • 44
    • 0036835575 scopus 로고    scopus 로고
    • Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1
    • Tauch, A., Kirchner, O., Löffler, B., Götker, S., Pühler, A. & Kalinowski, J. (2002). Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. Curr Microbiol 45, 362-367.
    • (2002) Curr Microbiol , vol.45 , pp. 362-367
    • Tauch, A.1    Kirchner, O.2    Löffler, B.3    Götker, S.4    Pühler, A.5    Kalinowski, J.6
  • 45
    • 72849181002 scopus 로고
    • Screening method for microorganisms accumulating metabolites and its use in the isolation of Micrococcus glutamicus
    • Udaka, S. (1960). Screening method for microorganisms accumulating metabolites and its use in the isolation of Micrococcus glutamicus. J Bacteriol 79, 754-755.
    • (1960) J Bacteriol , vol.79 , pp. 754-755
    • Udaka, S.1
  • 46
    • 0035081001 scopus 로고    scopus 로고
    • A Corynebacterium glutamicum mutant with a defined deletion within the rplK gene is impaired in (p)ppGpp accumulation upon amino acid starvation
    • Wehmeier, L., Brockmann-Gretza, O., Pisabarro, A., Tauch, A., Pühler, A., Martín, J.-F. & Kalinowski, J. (2001). A Corynebacterium glutamicum mutant with a defined deletion within the rplK gene is impaired in (p)ppGpp accumulation upon amino acid starvation. Microbiology 147, 691-700.
    • (2001) Microbiology , vol.147 , pp. 691-700
    • Wehmeier, L.1    Brockmann-Gretza, O.2    Pisabarro, A.3    Tauch, A.4    Pühler, A.5    Martín, J.-F.6    Kalinowski, J.7
  • 47
    • 0041429503 scopus 로고    scopus 로고
    • Genome-wide expression analysis in Corynebacterium glutamicum using DNA microarrays
    • Wendisch, V. F. (2003). Genome-wide expression analysis in Corynebacterium glutamicum using DNA microarrays. J Biotechnol 104, 273-285.
    • (2003) J Biotechnol , vol.104 , pp. 273-285
    • Wendisch, V.F.1
  • 48
    • 0028001327 scopus 로고
    • Analysis of a ribose transport operon from Bacillus subtilis
    • Woodson, K. & Devine, K. M. (1994). Analysis of a ribose transport operon from Bacillus subtilis. Microbiology 140, 1829-1838.
    • (1994) Microbiology , vol.140 , pp. 1829-1838
    • Woodson, K.1    Devine, K.M.2
  • 49
    • 85014855507 scopus 로고    scopus 로고
    • Central metabolism: Sugar uptake and conversion
    • Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press
    • Yokota, A. & Lindley, N. D. (2005). Central metabolism: sugar uptake and conversion. In Handbook of Corynebacterium glutamicum, pp. 215-240. Edited by L. Eggeling & M. Bott. Boca Raton, FL: CRC Press.
    • (2005) Handbook of Corynebacterium glutamicum , pp. 215-240
    • Yokota, A.1    Lindley, N.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.