-
1
-
-
33846991130
-
The mechanism of translation initiation in eukaryotes
-
Mathews M.B., Sonenberg N., and Hershey J. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Pestova T.V., Lorsch J.R., and Hellen C.U. The mechanism of translation initiation in eukaryotes. In: Mathews M.B., Sonenberg N., and Hershey J. (Eds). Translational Control in Biology and Medicine (2007), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 87-128
-
(2007)
Translational Control in Biology and Medicine
, pp. 87-128
-
-
Pestova, T.V.1
Lorsch, J.R.2
Hellen, C.U.3
-
2
-
-
0032530480
-
Proteolysis of human eukaryotic translation initiation factor eIF4GII, but not eIF4GI, coincides with the shutoff of host protein synthesis after poliovirus infection
-
Gradi A., Svitkin Y.V., Imataka H., and Sonenberg N. Proteolysis of human eukaryotic translation initiation factor eIF4GII, but not eIF4GI, coincides with the shutoff of host protein synthesis after poliovirus infection. Proc. Natl Acad. Sci. USA 95 (1998) 11089-11094
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11089-11094
-
-
Gradi, A.1
Svitkin, Y.V.2
Imataka, H.3
Sonenberg, N.4
-
3
-
-
0035396727
-
Internal ribosome entry sites in eukaryotic mRNA molecules
-
Hellen C.U., and Sarnow P. Internal ribosome entry sites in eukaryotic mRNA molecules. Genes Dev. 15 (2001) 1593-1612
-
(2001)
Genes Dev.
, vol.15
, pp. 1593-1612
-
-
Hellen, C.U.1
Sarnow, P.2
-
4
-
-
0031869662
-
Translation of vascular endothelial growth factor mRNA by internal ribosome entry: implications for translation under hypoxia
-
Stein I., Itin A., Einat P., Skaliter R., Grossman Z., and Keshet E. Translation of vascular endothelial growth factor mRNA by internal ribosome entry: implications for translation under hypoxia. Mol. Cell Biol. 18 (1998) 3112-3119
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 3112-3119
-
-
Stein, I.1
Itin, A.2
Einat, P.3
Skaliter, R.4
Grossman, Z.5
Keshet, E.6
-
5
-
-
0031741862
-
Two independent internal ribosome entry sites are involved in translation initiation of vascular endothelial growth factor mRNA
-
Huez I., Creancier L., Audigier S., Gensac M.C., Prats A.C., and Prats H. Two independent internal ribosome entry sites are involved in translation initiation of vascular endothelial growth factor mRNA. Mol. Cell Biol. 18 (1998) 6178-6190
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 6178-6190
-
-
Huez, I.1
Creancier, L.2
Audigier, S.3
Gensac, M.C.4
Prats, A.C.5
Prats, H.6
-
6
-
-
0032556949
-
C-Myc 5′ untranslated region contains an internal ribosome entry segment
-
Stoneley M., Paulin F.E., Le Quesne J.P., Chappell S.A., and Willis A.E. C-Myc 5′ untranslated region contains an internal ribosome entry segment. Oncogene 16 (1998) 423-428
-
(1998)
Oncogene
, vol.16
, pp. 423-428
-
-
Stoneley, M.1
Paulin, F.E.2
Le Quesne, J.P.3
Chappell, S.A.4
Willis, A.E.5
-
7
-
-
0037073485
-
Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus
-
Jan E., and Sarnow P. Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus. J. Mol. Biol. 324 (2002) 889-902
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 889-902
-
-
Jan, E.1
Sarnow, P.2
-
8
-
-
0037439060
-
Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA
-
Pestova T.V., and Hellen C.U. Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA. Genes Dev. 17 (2003) 181-186
-
(2003)
Genes Dev.
, vol.17
, pp. 181-186
-
-
Pestova, T.V.1
Hellen, C.U.2
-
9
-
-
0032927056
-
Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro
-
Sasaki J., and Nakashima N. Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro. J. Virol. 73 (1999) 1219-1226
-
(1999)
J. Virol.
, vol.73
, pp. 1219-1226
-
-
Sasaki, J.1
Nakashima, N.2
-
10
-
-
0034652349
-
Methionine-independent initiation of translation in the capsid protein of an insect RNA virus
-
Sasaki J., and Nakashima N. Methionine-independent initiation of translation in the capsid protein of an insect RNA virus. Proc. Natl Acad. Sci. USA 97 (2000) 1512-1515
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 1512-1515
-
-
Sasaki, J.1
Nakashima, N.2
-
11
-
-
0346103682
-
Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis
-
Jan E., Kinzy T.G., and Sarnow P. Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis. Proc. Natl Acad. Sci. USA 100 (2003) 15410-15415
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15410-15415
-
-
Jan, E.1
Kinzy, T.G.2
Sarnow, P.3
-
12
-
-
0038750886
-
Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes
-
Nishiyama T., Yamamoto H., Shibuya N., Hatakeyama Y., Hachimori A., Uchiumi T., and Nakashima N. Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes. Nucleic Acids Res. 31 (2003) 2434-2442
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2434-2442
-
-
Nishiyama, T.1
Yamamoto, H.2
Shibuya, N.3
Hatakeyama, Y.4
Hachimori, A.5
Uchiumi, T.6
Nakashima, N.7
-
13
-
-
0034682720
-
Initiation of protein synthesis from the A site of the ribosome
-
Wilson J.E., Pestova T.V., Hellen C.U., and Sarnow P. Initiation of protein synthesis from the A site of the ribosome. Cell 102 (2000) 511-520
-
(2000)
Cell
, vol.102
, pp. 511-520
-
-
Wilson, J.E.1
Pestova, T.V.2
Hellen, C.U.3
Sarnow, P.4
-
14
-
-
0033920258
-
Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites
-
Wilson J.E., Powell M.J., Hoover S.E., and Sarnow P. Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites. Mol. Cell Biol. 20 (2000) 4990-4999
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 4990-4999
-
-
Wilson, J.E.1
Powell, M.J.2
Hoover, S.E.3
Sarnow, P.4
-
15
-
-
0035259873
-
A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation
-
Kanamori Y., and Nakashima N. A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation. RNA 7 (2001) 266-274
-
(2001)
RNA
, vol.7
, pp. 266-274
-
-
Kanamori, Y.1
Nakashima, N.2
-
16
-
-
13944276301
-
A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs
-
Costantino D., and Kieft J.S. A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs. RNA 11 (2005) 332-343
-
(2005)
RNA
, vol.11
, pp. 332-343
-
-
Costantino, D.1
Kieft, J.S.2
-
17
-
-
33845335508
-
Structural basis for ribosome recruitment and manipulation by a viral IRES RNA
-
Pfingsten J.S., Costantino D., and Kieft J.S. Structural basis for ribosome recruitment and manipulation by a viral IRES RNA. Science 314 (2006) 1450-1454
-
(2006)
Science
, vol.314
, pp. 1450-1454
-
-
Pfingsten, J.S.1
Costantino, D.2
Kieft, J.S.3
-
19
-
-
33845361023
-
Structure of the ribosome-bound cricket paralysis virus IRES RNA
-
Schuler M., Connell S.R., Lescoute A., Giesebrecht J., Dabrowski M., Schroeer B., et al. Structure of the ribosome-bound cricket paralysis virus IRES RNA. Nat. Struct. Mol. Biol. 13 (2006) 1092-1096
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 1092-1096
-
-
Schuler, M.1
Connell, S.R.2
Lescoute, A.3
Giesebrecht, J.4
Dabrowski, M.5
Schroeer, B.6
-
20
-
-
33646791554
-
Divergent IRES elements in invertebrates
-
Jan E. Divergent IRES elements in invertebrates. Virus Res. 119 (2006) 16-28
-
(2006)
Virus Res.
, vol.119
, pp. 16-28
-
-
Jan, E.1
-
21
-
-
53949113826
-
Functional analysis of structural motifs in dicistroviruses
-
[Epub ahead of print]
-
Nakashima N., and Uchiumi T. Functional analysis of structural motifs in dicistroviruses. Virus Res. (2008) [Epub ahead of print]
-
(2008)
Virus Res.
-
-
Nakashima, N.1
Uchiumi, T.2
-
22
-
-
1942437439
-
Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts
-
Hatakeyama Y., Shibuya N., Nishiyama T., and Nakashima N. Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts. RNA 10 (2004) 779-786
-
(2004)
RNA
, vol.10
, pp. 779-786
-
-
Hatakeyama, Y.1
Shibuya, N.2
Nishiyama, T.3
Nakashima, N.4
-
23
-
-
11144247914
-
Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp
-
Cevallos R.C., and Sarnow P. Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp. J. Virol. 79 (2005) 677-683
-
(2005)
J. Virol.
, vol.79
, pp. 677-683
-
-
Cevallos, R.C.1
Sarnow, P.2
-
24
-
-
34250223454
-
Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes
-
Pfingsten J.S., Costantino D.A., and Kieft J.S. Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes. J. Mol. Biol. 370 (2007) 856-869
-
(2007)
J. Mol. Biol.
, vol.370
, pp. 856-869
-
-
Pfingsten, J.S.1
Costantino, D.A.2
Kieft, J.S.3
-
25
-
-
4644247805
-
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor
-
Spahn C.M., Jan E., Mulder A., Grassucci R.A., Sarnow P., and Frank J. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118 (2004) 465-475
-
(2004)
Cell
, vol.118
, pp. 465-475
-
-
Spahn, C.M.1
Jan, E.2
Mulder, A.3
Grassucci, R.A.4
Sarnow, P.5
Frank, J.6
-
26
-
-
45749123968
-
RNA structure-based ribosome recruitment: lessons from the Dicistroviridae intergenic region IRESes
-
Pfingsten J.S., and Kieft J.S. RNA structure-based ribosome recruitment: lessons from the Dicistroviridae intergenic region IRESes. RNA 14 (2008) 1255-1263
-
(2008)
RNA
, vol.14
, pp. 1255-1263
-
-
Pfingsten, J.S.1
Kieft, J.S.2
-
27
-
-
0035831269
-
Hepatitis C virus IRES RNA-induced changes in the conformation of the 40 S ribosomal subunit
-
Spahn C.M., Kieft J.S., Grassucci R.A., Penczek P.A., Zhou K., Doudna J.A., and Frank J. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40 S ribosomal subunit. Science 291 (2001) 1959-1962
-
(2001)
Science
, vol.291
, pp. 1959-1962
-
-
Spahn, C.M.1
Kieft, J.S.2
Grassucci, R.A.3
Penczek, P.A.4
Zhou, K.5
Doudna, J.A.6
Frank, J.7
-
28
-
-
1842576803
-
Domain movements of elongation factor eEF2 and the eukaryotic 80 S ribosome facilitate tRNA translocation
-
Spahn C.M., Gomez-Lorenzo M.G., Grassucci R.A., Jorgensen R., Andersen G.R., Beckmann R., et al. Domain movements of elongation factor eEF2 and the eukaryotic 80 S ribosome facilitate tRNA translocation. EMBO J. 23 (2004) 1008-1019
-
(2004)
EMBO J.
, vol.23
, pp. 1008-1019
-
-
Spahn, C.M.1
Gomez-Lorenzo, M.G.2
Grassucci, R.A.3
Jorgensen, R.4
Andersen, G.R.5
Beckmann, R.6
-
29
-
-
34247105689
-
Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site
-
Nishiyama T., Yamamoto H., Uchiumi T., and Nakashima N. Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site. Nucleic Acids Res. 35 (2007) 1514-1521
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1514-1521
-
-
Nishiyama, T.1
Yamamoto, H.2
Uchiumi, T.3
Nakashima, N.4
-
31
-
-
13944271964
-
Position of the CrPV IRES on the 40 S subunit and factor dependence of IRES/80 S ribosome assembly
-
Pestova T.V., Lomakin I.B., and Hellen C.U. Position of the CrPV IRES on the 40 S subunit and factor dependence of IRES/80 S ribosome assembly. EMBO Rep. 5 (2004) 906-913
-
(2004)
EMBO Rep.
, vol.5
, pp. 906-913
-
-
Pestova, T.V.1
Lomakin, I.B.2
Hellen, C.U.3
-
32
-
-
61349202417
-
Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures
-
[Epub ahead of print]
-
Kieft J.S. Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures. Virus Res (2008) [Epub ahead of print]
-
(2008)
Virus Res
-
-
Kieft, J.S.1
-
33
-
-
18744420805
-
Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80 S ribosome at 17.5 Å resolution
-
Gomez-Lorenzo M.G., Spahn C.M., Agrawal R.K., Grassucci R.A., Penczek P., Chakraburtty K., et al. Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80 S ribosome at 17.5 Å resolution. EMBO J. 19 (2000) 2710-2718
-
(2000)
EMBO J.
, vol.19
, pp. 2710-2718
-
-
Gomez-Lorenzo, M.G.1
Spahn, C.M.2
Agrawal, R.K.3
Grassucci, R.A.4
Penczek, P.5
Chakraburtty, K.6
-
34
-
-
42949126723
-
Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
-
Fei J., Kosuri P., MacDougall D.D., and Gonzalez Jr. R.L. Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Mol. Cell 30 (2008) 348-359
-
(2008)
Mol. Cell
, vol.30
, pp. 348-359
-
-
Fei, J.1
Kosuri, P.2
MacDougall, D.D.3
Gonzalez Jr., R.L.4
-
35
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle M., Zavialov A., Sengupta J., Rawat U., Ehrenberg M., and Frank J. Locking and unlocking of ribosomal motions. Cell 114 (2003) 123-134
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
36
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank J., and Agrawal R.K. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 406 (2000) 318-322
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
37
-
-
0038300651
-
Peptidyl-tRNA regulates the GTPase activity of translation factors
-
Zavialov A.V., and Ehrenberg M. Peptidyl-tRNA regulates the GTPase activity of translation factors. Cell 114 (2003) 113-122
-
(2003)
Cell
, vol.114
, pp. 113-122
-
-
Zavialov, A.V.1
Ehrenberg, M.2
-
38
-
-
34247185278
-
Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site
-
Yamamoto H., Nakashima N., Ikeda Y., and Uchiumi T. Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site. J. Biol. Chem. 282 (2007) 7770-7776
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 7770-7776
-
-
Yamamoto, H.1
Nakashima, N.2
Ikeda, Y.3
Uchiumi, T.4
-
39
-
-
27244449157
-
Function of the ribosomal E-site: a mutagenesis study
-
Sergiev P.V., Lesnyak D.V., Kiparisov S.V., Burakovsky D.E., Leonov A.A., Bogdanov A.A., et al. Function of the ribosomal E-site: a mutagenesis study. Nucleic Acids Res. 33 (2005) 6048-6056
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6048-6056
-
-
Sergiev, P.V.1
Lesnyak, D.V.2
Kiparisov, S.V.3
Burakovsky, D.E.4
Leonov, A.A.5
Bogdanov, A.A.6
-
40
-
-
0024841098
-
Binding of the 3′ terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation
-
Lill R., Robertson J.M., and Wintermeyer W. Binding of the 3′ terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation. EMBO J. 8 (1989) 3933-3938
-
(1989)
EMBO J.
, vol.8
, pp. 3933-3938
-
-
Lill, R.1
Robertson, J.M.2
Wintermeyer, W.3
-
41
-
-
0029014899
-
Interaction of human immunodeficiency virus type 1 Tat-derived peptides with TAR RNA
-
Long K.S., and Crothers D.M. Interaction of human immunodeficiency virus type 1 Tat-derived peptides with TAR RNA. Biochemistry 34 (1995) 8885-8895
-
(1995)
Biochemistry
, vol.34
, pp. 8885-8895
-
-
Long, K.S.1
Crothers, D.M.2
-
42
-
-
0032860710
-
Probing the TRAP-RNA interaction with nucleoside analogs
-
Elliott M.B., Gottlieb P.A., and Gollnick P. Probing the TRAP-RNA interaction with nucleoside analogs. RNA 5 (1999) 1277-1289
-
(1999)
RNA
, vol.5
, pp. 1277-1289
-
-
Elliott, M.B.1
Gottlieb, P.A.2
Gollnick, P.3
-
43
-
-
3142562521
-
Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2
-
Marquez V., Wilson D.N., Tate W.P., Triana-Alonso F., and Nierhaus K.H. Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2. Cell 118 (2004) 45-55
-
(2004)
Cell
, vol.118
, pp. 45-55
-
-
Marquez, V.1
Wilson, D.N.2
Tate, W.P.3
Triana-Alonso, F.4
Nierhaus, K.H.5
-
44
-
-
27944445035
-
Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome
-
McGarry K.G., Walker S.E., Wang H., and Fredrick K. Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome. Mol. Cell 20 (2005) 613-622
-
(2005)
Mol. Cell
, vol.20
, pp. 613-622
-
-
McGarry, K.G.1
Walker, S.E.2
Wang, H.3
Fredrick, K.4
-
46
-
-
0025678448
-
Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site
-
Geigenmuller U., and Nierhaus K.H. Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site. EMBO J. 9 (1990) 4527-4533
-
(1990)
EMBO J.
, vol.9
, pp. 4527-4533
-
-
Geigenmuller, U.1
Nierhaus, K.H.2
-
47
-
-
33747878071
-
Decoding errors and the involvement of the E-site
-
Nierhaus K.H. Decoding errors and the involvement of the E-site. Biochimie 88 (2006) 1013-1019
-
(2006)
Biochimie
, vol.88
, pp. 1013-1019
-
-
Nierhaus, K.H.1
-
48
-
-
0024241761
-
Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
-
Stern S., Moazed D., and Noller H.F. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164 (1988) 481-489
-
(1988)
Methods Enzymol.
, vol.164
, pp. 481-489
-
-
Stern, S.1
Moazed, D.2
Noller, H.F.3
|