메뉴 건너뛰기




Volumn 9, Issue 12, 2008, Pages

A genome-wide screen for modifiers of transgene variegation identifies genes with critical roles in development

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE 1; HISTONE DEACETYLASE 1; NUCLEIC ACID BINDING PROTEIN; PROTEIN BAZ1B; PROTEIN SMARCA 5; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; BAZ1B PROTEIN, MOUSE; HDAC1 PROTEIN, MOUSE; HISTONE DEACETYLASE;

EID: 60849118096     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2008-9-12-r182     Document Type: Article
Times cited : (94)

References (50)
  • 1
    • 0025204569 scopus 로고
    • Position-effect variegation after 60 years
    • 10.1016/0168-9525(90)90304-O 2087785
    • Henikoff S Position-effect variegation after 60 years. Trends Genet 1990, 6:422-426. 10.1016/0168-9525(90)90304-O 2087785
    • (1990) Trends Genet , vol.6 , pp. 422-426
    • Henikoff, S.1
  • 2
    • 0000563999 scopus 로고
    • Parental control of position-effect variegation. II. Effect of sex of parent contributing white-mottled rearrangement in Drosophila melanogaster
    • 1210265 13915890
    • Spofford JB Parental control of position-effect variegation. II. Effect of sex of parent contributing white-mottled rearrangement in Drosophila melanogaster. Genetics 1961, 46:1151-1167. 1210265 13915890
    • (1961) Genetics , vol.46 , pp. 1151-1167
    • Spofford, J.B.1
  • 3
    • 0017844230 scopus 로고
    • Influence of maternal phenotype on metabolic differentiation of agouti locus mutants in the mouse
    • 1224599 640377
    • Wolff GL Influence of maternal phenotype on metabolic differentiation of agouti locus mutants in the mouse. Genetics 1978, 88:529-539. 1224599 640377
    • (1978) Genetics , vol.88 , pp. 529-539
    • Wolff, G.L.1
  • 5
    • 0043093697 scopus 로고    scopus 로고
    • Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
    • 165709 12861015 10.1128/MCB.23.15.5293-5300.2003
    • Waterland RA Jirtle RL Transposable elements: Targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 2003, 23:5293-5300. 165709 12861015 10.1128/MCB.23.15.5293-5300.2003
    • (2003) Mol Cell Biol , vol.23 , pp. 5293-5300
    • Waterland, R.A.1    Jirtle, R.L.2
  • 6
    • 0032751471 scopus 로고    scopus 로고
    • Epigenetic inheritance at the agouti locus in the mouse
    • 10.1038/15490 10545949
    • Morgan HD Sutherland HG Martin DI Whitelaw E Epigenetic inheritance at the agouti locus in the mouse. Nat Genet 1999, 23:314-318. 10.1038/15490 10545949
    • (1999) Nat Genet , vol.23 , pp. 314-318
    • Morgan, H.D.1    Sutherland, H.G.2    Martin, D.I.3    Whitelaw, E.4
  • 7
    • 0026928683 scopus 로고
    • Position effect variegation and chromatin proteins
    • 10.1002/bies.950140907 1365916
    • Reuter G Spierer P Position effect variegation and chromatin proteins. Bioessays 1992, 14:605-612. 10.1002/bies.950140907 1365916
    • (1992) Bioessays , vol.14 , pp. 605-612
    • Reuter, G.1    Spierer, P.2
  • 8
    • 0037324675 scopus 로고    scopus 로고
    • Position-effect variegation and the genetic dissection of chromatin regulation in Drosophila
    • 10.1016/S1084-9521(02)00138-6 12524009
    • Schotta G Ebert A Dorn R Reuter G Position-effect variegation and the genetic dissection of chromatin regulation in Drosophila. Semin Cell Dev Biol 2003, 14:67-75. 10.1016/S1084-9521(02)00138-6 12524009
    • (2003) Semin Cell Dev Biol , vol.14 , pp. 67-75
    • Schotta, G.1    Ebert, A.2    Dorn, R.3    Reuter, G.4
  • 9
    • 0027496506 scopus 로고
    • The enhancer of position-effect variegation of Drosophila, E(var)3-93D, codes for a chromatin protein containing a conserved domain common to several transcriptional regulators
    • 47985 8248257 10.1073/pnas.90.23.11376
    • Dorn R Krauss V Reuter G Saumweber H The enhancer of position-effect variegation of Drosophila, E(var)3-93D, codes for a chromatin protein containing a conserved domain common to several transcriptional regulators. Proc Natl Acad Sci USA 1993, 90:11376-11380. 47985 8248257 10.1073/pnas.90.23.11376
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 11376-11380
    • Dorn, R.1    Krauss, V.2    Reuter, G.3    Saumweber, H.4
  • 13
    • 0031984304 scopus 로고    scopus 로고
    • Repeat-induced gene silencing in mammals
    • 10.1038/ng0198-56 9425901
    • Garrick D Fiering S Martin DI Whitelaw E Repeat-induced gene silencing in mammals. Nat Genet 1998, 18:56-59. 10.1038/ng0198-56 9425901
    • (1998) Nat Genet , vol.18 , pp. 56-59
    • Garrick, D.1    Fiering, S.2    Martin, D.I.3    Whitelaw, E.4
  • 14
    • 0037850970 scopus 로고    scopus 로고
    • Sensitive flow cytometric analysis reveals a novel type of parent-of-origin effect in the mouse genome
    • 10.1016/S0960-9822(03)00335-X 12781134
    • Preis JI Downes M Oates NA Rasko JE Whitelaw E Sensitive flow cytometric analysis reveals a novel type of parent-of-origin effect in the mouse genome. Curr Biol 2003, 13:955-959. 10.1016/S0960-9822(03)00335-X 12781134
    • (2003) Curr Biol , vol.13 , pp. 955-959
    • Preis, J.I.1    Downes, M.2    Oates, N.A.3    Rasko, J.E.4    Whitelaw, E.5
  • 15
    • 33947235559 scopus 로고    scopus 로고
    • Estimating the number of coding mutations in genotypic and phenotypic driven N-ethyl-N-nitrosourea (ENU) screens: Revisited
    • 10.1007/s00335-006-0065-z 17347895
    • Keays DA Clark TG Campbell TG Broxholme J Valdar W Estimating the number of coding mutations in genotypic and phenotypic driven N-ethyl-N-nitrosourea (ENU) screens: Revisited. Mamm Genome 2007, 18:123-124. 10.1007/s00335-006-0065-z 17347895
    • (2007) Mamm Genome , vol.18 , pp. 123-124
    • Keays, D.A.1    Clark, T.G.2    Campbell, T.G.3    Broxholme, J.4    Valdar, W.5
  • 16
    • 33644639082 scopus 로고    scopus 로고
    • Estimating the number of coding mutations in genotypic- and phenotypic-driven N-ethyl-N-nitrosourea (ENU) screens
    • 10.1007/s00335-005-0101-4 16518690
    • Keays DA Clark TG Flint J Estimating the number of coding mutations in genotypic- and phenotypic-driven N-ethyl-N-nitrosourea (ENU) screens. Mamm Genome 2006, 17:230-238. 10.1007/s00335-005-0101-4 16518690
    • (2006) Mamm Genome , vol.17 , pp. 230-238
    • Keays, D.A.1    Clark, T.G.2    Flint, J.3
  • 20
    • 0037189568 scopus 로고    scopus 로고
    • SUMO-1 modification of histone deacetylase 1 (HDAC1) modulates its biological activities
    • 10.1074/jbc.M203690200 11960997
    • David G Neptune MA DePinho RA SUMO-1 modification of histone deacetylase 1 (HDAC1) modulates its biological activities. J Biol Chem 2002, 277:23658-23663. 10.1074/jbc.M203690200 11960997
    • (2002) J Biol Chem , vol.277 , pp. 23658-23663
    • David, G.1    Neptune, M.A.2    DePinho, R.A.3
  • 23
    • 0036565656 scopus 로고    scopus 로고
    • WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci
    • 125993 11980720 10.1093/emboj/21.9.2231
    • Bozhenok L Wade PA Varga-Weisz P WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci. EMBO J 2002, 21:2231-2241. 125993 11980720 10.1093/emboj/21.9.2231
    • (2002) EMBO J , vol.21 , pp. 2231-2241
    • Bozhenok, L.1    Wade, P.A.2    Varga-Weisz, P.3
  • 26
    • 0025323887 scopus 로고
    • Epigenetic control of transgene expression and imprinting by genotype-specific modifiers
    • 10.1016/0092-8674(90)90195-K 2111735
    • Allen ND Norris ML Surani MA Epigenetic control of transgene expression and imprinting by genotype-specific modifiers. Cell 1990, 61:853-861. 10.1016/0092-8674(90)90195-K 2111735
    • (1990) Cell , vol.61 , pp. 853-861
    • Allen, N.D.1    Norris, M.L.2    Surani, M.A.3
  • 27
    • 0024758382 scopus 로고
    • Cellular mosaicism in the methylation and expression of hemizygous loci in the mouse
    • 10.1101/gad.3.11.1669 2606343
    • McGowan R Campbell R Peterson A Sapienza C Cellular mosaicism in the methylation and expression of hemizygous loci in the mouse. Genes Dev 1989, 3:1669-1676. 10.1101/gad.3.11.1669 2606343
    • (1989) Genes Dev , vol.3 , pp. 1669-1676
    • McGowan, R.1    Campbell, R.2    Peterson, A.3    Sapienza, C.4
  • 28
    • 0030458054 scopus 로고    scopus 로고
    • Variegated expression of a globin transgene correlates with chromatin accessibility but not methylation status
    • 146354 9016659 10.1093/nar/24.24.4902
    • Garrick D Sutherland H Robertson G Whitelaw E Variegated expression of a globin transgene correlates with chromatin accessibility but not methylation status. Nucleic Acids Res 1996, 24:4902-4909. 146354 9016659 10.1093/nar/24.24.4902
    • (1996) Nucleic Acids Res , vol.24 , pp. 4902-4909
    • Garrick, D.1    Sutherland, H.2    Robertson, G.3    Whitelaw, E.4
  • 29
    • 0026747665 scopus 로고
    • Cis-acting sequences regulating expression of the human alpha-globin cluster lie within constitutively open chromatin
    • 10.1016/0092-8674(92)90290-S 1591777
    • Vyas P Vickers MA Simmons DL Ayyub H Craddock CF Higgs DR Cis-acting sequences regulating expression of the human alpha-globin cluster lie within constitutively open chromatin. Cell 1992, 69:781-793. 10.1016/ 0092-8674(92)90290-S 1591777
    • (1992) Cell , vol.69 , pp. 781-793
    • Vyas, P.1    Vickers, M.A.2    Simmons, D.L.3    Ayyub, H.4    Craddock, C.F.5    Higgs, D.R.6
  • 30
    • 0034254857 scopus 로고    scopus 로고
    • NuRD and SIN3 histone deacetylase complexes in development
    • 10.1016/S0168-9525(00)02066-7 10904264
    • Ahringer J NuRD and SIN3 histone deacetylase complexes in development. Trends Genet 2000, 16:351-356. 10.1016/S0168-9525(00)02066-7 10904264
    • (2000) Trends Genet , vol.16 , pp. 351-356
    • Ahringer, J.1
  • 31
    • 0029932598 scopus 로고    scopus 로고
    • A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p
    • 10.1126/science.272.5260.408 8602529
    • Taunton J Hassig CA Schreiber SL A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science 1996, 272:408-411. 10.1126/science.272.5260.408 8602529
    • (1996) Science , vol.272 , pp. 408-411
    • Taunton, J.1    Hassig, C.A.2    Schreiber, S.L.3
  • 32
    • 27844520157 scopus 로고    scopus 로고
    • Ligand-induced transrepression by VDR through association of WSTF with acetylated histones
    • 1283952 16252006 10.1038/sj.emboj.7600853
    • Fujiki R Kim MS Sasaki Y Yoshimura K Kitagawa H Kato S Ligand-induced transrepression by VDR through association of WSTF with acetylated histones. EMBO J 2005, 24:3881-3894. 1283952 16252006 10.1038/ sj.emboj.7600853
    • (2005) EMBO J , vol.24 , pp. 3881-3894
    • Fujiki, R.1    Kim, M.S.2    Sasaki, Y.3    Yoshimura, K.4    Kitagawa, H.5    Kato, S.6
  • 33
    • 25444442079 scopus 로고    scopus 로고
    • Chromatin remodeling by WSTF-ISWI at the replication site: Opening a window of opportunity for epigenetic inheritance?
    • 15753658
    • Poot RA Bozhenok L Berg van den DL Hawkes N Varga-Weisz PD Chromatin remodeling by WSTF-ISWI at the replication site: Opening a window of opportunity for epigenetic inheritance? Cell Cycle 2005, 4:543-546. 15753658
    • (2005) Cell Cycle , vol.4 , pp. 543-546
    • Poot, R.A.1    Bozhenok, L.2    Berg, D.L.3    Hawkes, N.4    Varga-Weisz, P.D.5
  • 34
    • 0037265835 scopus 로고    scopus 로고
    • Williams-Beuren syndrome: A model of recurrent genomic mutation
    • 10.1159/000067836 12638521
    • Perez Jurado AL Williams-Beuren syndrome: A model of recurrent genomic mutation. Horm Res 2003, 59(Suppl 1):106-113. 10.1159/000067836 12638521
    • (2003) Horm Res , vol.59 , Issue.SUPPL. 1 , pp. 106-113
    • Perez Jurado, A.L.1
  • 35
    • 0035113116 scopus 로고    scopus 로고
    • Analysis of cerebral shape in Williams syndrome
    • 10.1001/archneur.58.2.283 11176967
    • Schmitt JE Eliez S Bellugi U Reiss AL Analysis of cerebral shape in Williams syndrome. Arch Neurol 2001, 58:283-287. 10.1001/ archneur.58.2.283 11176967
    • (2001) Arch Neurol , vol.58 , pp. 283-287
    • Schmitt, J.E.1    Eliez, S.2    Bellugi, U.3    Reiss, A.L.4
  • 37
    • 0036021044 scopus 로고    scopus 로고
    • The elastin gene is disrupted in a family with a balanced translocation t(7;16)(q11.23;q13) associated with a variable expression of the Williams-Beuren syndrome
    • 10.1038/sj.ejhg.5200812 12080386
    • Duba HC Doll A Neyer M Erdel M Mann C Hammerer I Utermann G Grzeschik KH The elastin gene is disrupted in a family with a balanced translocation t(7;16)(q11.23;q13) associated with a variable expression of the Williams-Beuren syndrome. Eur J Hum Genet 2002, 10:351-361. 10.1038/ sj.ejhg.5200812 12080386
    • (2002) Eur J Hum Genet , vol.10 , pp. 351-361
    • Duba, H.C.1    Doll, A.2    Neyer, M.3    Erdel, M.4    Mann, C.5    Hammerer, I.6    Utermann, G.7    Grzeschik, K.H.8
  • 43
    • 0035309316 scopus 로고    scopus 로고
    • Integration of a c-myc transgene results in disruption of the mouse Gtf2ird1 gene, the homologue of the human GTF2IRD1 gene hemizygously deleted in Williams-Beuren syndrome
    • 10.1006/geno.2001.6507 11352562
    • Durkin ME Keck-Waggoner CL Popescu NC Thorgeirsson SS Integration of a c-myc transgene results in disruption of the mouse Gtf2ird1 gene, the homologue of the human GTF2IRD1 gene hemizygously deleted in Williams-Beuren syndrome. Genomics 2001, 73:20-27. 10.1006/ geno.2001.6507 11352562
    • (2001) Genomics , vol.73 , pp. 20-27
    • Durkin, M.E.1    Keck-Waggoner, C.L.2    Popescu, N.C.3    Thorgeirsson, S.S.4
  • 45
    • 0030298416 scopus 로고    scopus 로고
    • The vagaries of variegating transgenes
    • 10.1002/bies.950181111 8939070
    • Martin DI Whitelaw E The vagaries of variegating transgenes. Bioessays 1996, 18:919-923. 10.1002/bies.950181111 8939070
    • (1996) Bioessays , vol.18 , pp. 919-923
    • Martin, D.I.1    Whitelaw, E.2
  • 46
    • 52249087966 scopus 로고    scopus 로고
    • Analysis of DNA content and green fluorescent protein expression
    • Unit 7.16. 18770728 Chapter 7
    • Schmid I Sakamoto KM Analysis of DNA content and green fluorescent protein expression. Curr Protoc Cytom 2001 Chapter 7 Unit 7.16. 18770728
    • (2001) Curr Protoc Cytom
    • Schmid, I.1    Sakamoto, K.M.2
  • 47
    • 33644750203 scopus 로고    scopus 로고
    • Effects of histone deacetylase inhibitor (HDACi); Trichostatin-A (TSA) on the expression of housekeeping genes
    • 10.1016/j.mcp.2005.09.008 16326072
    • Mogal A Abdulkadir SA Effects of histone deacetylase inhibitor (HDACi); Trichostatin-A (TSA) on the expression of housekeeping genes. Mol Cell Probes 2006, 20:81-86. 10.1016/j.mcp.2005.09.008 16326072
    • (2006) Mol Cell Probes , vol.20 , pp. 81-86
    • Mogal, A.1    Abdulkadir, S.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.