Oligomeric-State-Dependent Conformational Change of the BLUF Protein TePixD (Tll0078)

Journal of Molecular Biology

Volumn 386, Issue 5, 2009, Pages 1290-1300

  Tanaka, Keisuke ^a   Nakasone, Yusuke ^a   Okajima, Koji ^b,c   Ikeuchi, Masahiko ^b   Tokutomi, Satoru ^c   Terazima, Masahide ^a  

^a KYOTO UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c Graduate School of Engineering   (Japan)

Author keywords

BLUF; conformation change; diffusion; PixD; transient grating

Indexed keywords

BACTERIAL PROTEIN; PROTEIN PIXD; RECEPTOR PROTEIN; UNCLASSIFIED DRUG;

ABSORPTION SPECTROSCOPY; ARTICLE; BLUE LIGHT; CALORIMETRY; CONFORMATIONAL TRANSITION; CYANOBACTERIUM; DIFFUSION; GEL PERMEATION CHROMATOGRAPHY; HYDROPHOBICITY; MOLECULAR WEIGHT; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTEIN CONFORMATION; SIGNAL TRANSDUCTION; THERMOSYNECHOCOCCUS ELONGATUS;

THERMOSYNECHOCOCCUS ELONGATUS BP-1;

EID: 60849112236     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.01.026     Document Type: Article

References (41)

1. In: Briggs W.R., and Spudich J.L. (Eds). Handbook of Photosensory Receptors (2005), Wiley-VCH, Weinheim
2. Losi A. Flavin-based blue-light photosensors: a photobiophysics update. Photochem. Photobiol. 83 (2007) 1283-1300
3. Gomelsky M., and Klug G. BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms. Trends Biochem. Sci. 27 (2002) 497-500
4. Van der Horst M.A., and Hellingwerf K.J. Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families. Acc. Chem. Res. 37 (2004) 13-20
5. Kita A., Okajima K., Morimoto Y., Ikeuchi M., and Miki K. Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. J. Mol. Biol. 349 (2005) 1-9
6. Anderson S., Dragnea V., Masuda S., Ybe J., Moffat K., and Bauer C.E. Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides. Biochemistry 44 (2005) 7998-8005
7. Grinstead J.S., Hsu S.T., Laan W., Bonvin A.M., Hellingwerf K.J., Boelens R., et al. The solution structure of the AppA BLUF domain: insight into the mechanism of light-induced signaling. ChemBioChem 7 (2006) 187-193
8. Laan W., van der Horst M.A., van Stokkum I.H., and Hellingwerf K.J. Initial characterization of the primary photochemistry of AppA, a blue-light-using flavin adenine dinucleotide-domain containing transcriptional antirepressor protein from Rhodobacter sphaeroides: a key role for reversible intramolecular proton transfer from the flavin adenine dinucleotide chromophore to a conserved tyrosine?. Photochem. Photobiol. 78 (2003) 290-297
9. Gauden M., Yeremenko S., Laan W., van Stokkum I.H., Ihalainen J.A., van Grondelle R., et al. Photocycle of the flavin-binding photoreceptor AppA, a bacterial transcriptional antirepressor of photosynthesis genes. Biochemistry 44 (2005) 3653-3662
10. Hasegawa K., Masuda S., and Ono T.A. Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a cyanobacterium Synechocystis sp. PCC6803. Biochemistry 43 (2004) 14979-14986
11. Masuda S., Hasegawa K., and Ono T.A. Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state. Biochemistry 44 (2005) 1215-1224
12. Okajima K., Fukushima Y., Suzuki H., Kita A., Ochiai Y., Katayama M., et al. Fate determination of the flavin photoreceptions in the cyanobacterial blue light receptor TePixD (Tll0078). J. Mol. Biol. 363 (2006) 10-18
13. Majerus T., Kottke T., Laan W., Hellingwerf K.J., and Heberle J. Time-resolved FT-IR spectroscopy traces signal relay within the blue-light receptor AppA. ChemPhysChem 8 (2007) 1787-1789
14. Wu Q., Ko W.H., and Gardner K.H. Structural requirements for key residues and auxiliary portions of a BLUF domain. Biochemistry 47 (2008) 10271-10280
15. Okajima K., Yoshihara S., Fukushima Y., Geng X., Katayama M., Higashi S., et al. Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria. J. Biochem. (Tokyo) 137 (2005) 741-750
16. Fukushima Y., Okajima K., Shibata Y., Ikeuchi M., and Itoh S. Primary intermediate in the photocycle of a blue-light sensory BLUF FAD-protein, Tll0078, of Thermosynechococcus elongatus BP-1. Biochemistry 44 (2005) 5149-5158
17. Nishioku Y., Nakagawa M., Tsuda M., and Terazima M. A spectrally silent transformation in the photolysis of octopus rhodopsin: a protein conformational change without any accompanying change of the chromophore's absorption. Biophys. J. 80 (2001) 2922-2927
18. Sakakura M., Yamaguchi S., Hirota N., and Terazima M. Dynamics of structure and energy of horse carboxymyoglobin after photodissociation of carbon monoxide. J. Am. Chem. Soc. 123 (2001) 4286-4294
19. Nishida S., Nada T., and Terazima M. Kinetics of intermolecular interaction during protein folding of reduced cytochrome c. Biophys. J. 87 (2004) 2663-2675
20. Khan J.S., Imamoto Y., Yamazaki Y., Kataoka M., Tokunaga F., and Terazima M. A biosensor in the time domain based on the diffusion coefficient measurement: intermolecular interaction of an intermediate of photoactive yellow protein. Anal. Chem. 77 (2005) 6625-6629
21. Genberg L., Richard L., McLendon G., and Miller R.J. Direct observation of global protein motion in hemoglobin and myoglobin on picosecond time scales. Science 251 (1991) 1051-1054
22. Dadusc G., Ogilvie J.P., Schulenberg P., Marvet U., and Miller R.J. Diffractive optics-based heterodyne-detected four-wave mixing signals of protein motion: from "protein quakes" to ligand escape for myoglobin. Proc. Natl Acad. Sci. USA 98 (2001) 6110-6115
23. Inoue K., Baden N., and Terazima M. Diffusion coefficient and the secondary structure of poly-l-glutamic acid in aqueous solution. J. Phys. Chem. B 109 (2005) 22623-22628
24. Baden N., and Terazima M. Intermolecular interaction of myoglobin with water molecules along the pH denaturation curve. J. Phys. Chem. B 110 (2006) 15548-15555
25. Bismuto E., Gratton E., and Lamb D.C. Dynamics of ANS binding to tuna apomyoglobin measured with fluorescence correlation spectroscopy. Biophys. J. 81 (2001) 3510-3521
26. Riveros-Moreno V., and Wittenberg J.B. The self-diffusion coefficients of myoglobin and hemoglobin in concentrated solutions. J. Biol. Chem. 247 (1972) 895-901
27. Creeth J.M. Studies of free diffusion in liquids with the Rayleigh method: III. The analysis of known mixtures and some preliminary investigations with proteins. (1958). J. Phys. Chem. 62 (1958) 66-74
28. Alaupovic P., Sanbar S.S., Furman R.H., Sullivan M.L., and Walraven S.L. Studies of the composition and structure of serum lipoproteins. Isolation and characterization of very high density lipoproteins of human serum. Biochemistry 5 (1966) 4044-4053
29. Osaki S. Investigation on caeruloplasmin. J. Biochem. (Tokyo) 48 (1960) 190-198
30. Cecil R., and Ogston A.G. Sedimentation and diffusion of glucose oxidase (notatin). Biochem. J. 42 (1948) 229
31. Hazra P., Inoue K., Laan W., Hellingwerf K.J., and Terazima M. Tetramer formation kinetics in the signaling state of AppA monitored by time-resolved diffusion. Biophys. J. 91 (2006) 654-661
32. Nakasone Y., Ono T.A., Ishii A., Masuda S., and Terazima M. Transient dimerization and conformational change of a BLUF protein: YcgF. J. Am. Chem. Soc. 129 (2007) 7028-7035
33. Nakasone Y., Eitoku T., Matsuoka D., Tokutomi S., and Terazima M. Kinetic measurement of transient dimerization and dissociation reactions of Arabidopsis phototropin 1 LOV2 domain. Biophys. J. 91 (2006) 645-653
34. Khan J.S., Imamoto Y., Harigai M., Kataoka M., and Terazima M. Conformational changes of PYP monitored by diffusion coefficient: effect of N-terminal α-helices. Biophys. J. 90 (2006) 3686-3693
35. Nakasone Y., Eitoku T., Matsuoka D., Tokutomi S., and Terazima M. Dynamics of conformational changes of Arabidopsis phototropin 1 LOV2 with the linker domain. J. Mol. Biol. 367 (2007) 432-442
36. Eitoku T., Nakasone Y., Matsuoka D., Tokutomi S., and Terazima M. Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation. J. Am. Chem. Soc. 127 (2005) 13238-13244
37. Eitoku T., Nakasone Y., Zikihara K., Matsuoka D., Tokutomi S., and Terazima M. Photochemical intermediates of Arabidopsis phototropin 2 LOV domains associated with conformational changes. J. Mol. Biol. 371 (2007) 1290-1303
38. Hoshihara Y., Imamoto Y., Kataoka M., Tokunaga F., and Terazima M. Conformational changes in the N-terminal region of photoactive yellow protein: a time-resolved diffusion study. Biophys. J. 94 (2008) 2187-2193
39. Yuan H., and Bauer C.E. PixE promotes dark oligomerization of the BLUF photoreceptor PixD. Proc. Natl Acad. Sci. USA 105 (2008) 11715-11719
40. Terazima M., and Hirota N. Translational diffusion of a transient radical studied by the transient grating method, pyradinyl radical in 2-propanol. J. Chem. Phys. 98 (1993) 6257-6262
41. Terazima M. Diffusion coefficients as a monitor of reaction kinetics of biological molecules. Phys. Chem. Chem. Phys. 8 (2006) 545-557