A biosensor in the time domain based on the diffusion coefficient measurement: Intermolecular interaction of an intermediate of photoactive yellow protein

Analytical Chemistry

Volumn 77, Issue 20, 2005, Pages 6625-6629

  Khan, Javaid Shahbaz ^a   Imamoto, Yasushi ^b   Yamazaki, Yoichi ^b   Kataoka, Mikio ^b   Tokunaga, Fumio ^c   Terazima, Masahide ^a  

^a KYOTO UNIVERSITY   (Japan)

^b NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^c OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHARACTERIZATION; DIFFUSION; DNA; MOLECULAR STRUCTURE; PROTEINS; REACTION KINETICS; TIME DOMAIN ANALYSIS;

DIFFUSION MEASUREMENT; INTERMOLECULAR INTERACTION; TRANSIENT GRATING; YELLOW PROTEINS;

BIOSENSORS;

PHOTOACTIVE YELLOW PROTEIN;

ARTICLE; BIOSENSOR; DIFFUSION; DIFFUSION COEFFICIENT; MEASUREMENT; METHODOLOGY; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DNA INTERACTION; PROTEIN INTERACTION; PROTEIN PROTEIN INTERACTION;

BACTERIAL PROTEINS; BIOSENSING TECHNIQUES; DIFFUSION; DNA; PHOTORECEPTORS, MICROBIAL; PROTEIN BINDING; SENSITIVITY AND SPECIFICITY; TIME FACTORS;

EID: 27144488096     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac050559n     Document Type: Article

References (47)

1. Schubert, F.; Zettl, H.; Hafner, W.; Krauss, G.; Krausch, G. Biochemistry 2003, 42, 10288.
2. Nakata, E.; Nagase, T.; Shinkai, S.; Hamachi, I. J. Am. Chem. Soc. 2004, 126, 490-495.
3. Chen, P.; He, C. J. Am. Chem. Soc. 2004, 126, 728-729.
4. Katz, E.; Buckmann, A F.; Willner, I. J. Am. Chem. Soc. 2001, 123, 10752-10753.
5. Chan, P.-H.; Liu, H.-B.; Chen, Y. W.; Chan, K.-C.; Tsang, C.-W.; Leung, Y.-C.; Wong, K.-Y. J. Am. Chem. Soc. 2004, 126, 4074-4075.
6. Northup, J. Methods Mol. Biol. 2004, 261, 93-112.
7. Schultz, D. A. Curr. Opin. Biotechnol. 2003, 14, 13-22.
8. McDonnell, J. M. Curr. Opin. Chem. Biol. 2001, 5, 572-577.
9. Salamon, Z.; Macleod, H. A.; Tollin, G. Biochim. Biophys. Acta 1997, 1331, 131-52.
10. Medintz, I. L.; Anderson, G. P.; Lassman, M. E.; Goldman, E. R.; Bettencourt, L. A.; Mauro, J. M. Anal. Chem. 2004, 76, 5620.
11. Casper, D.; Bukhtiyarova, M.; Springman, E. B. Anal. Biochem. 2004, 325, 126-136.
12. Liu, X.; Wei, J.; Song, D.; Zhang, Z.; Zhang, H.; Luo, G. Anal. Biochem. 2003, 314, 301.
13. Benitez, M. J.; Jimenez, J. S. Anal. Biochem. 2002, 302, 161.
14. Nath, N.; Chilkoti, A. J. Am. Chem. Soc. 2001, 123, 8197.
15. Haes, A. J.; Van Duyne, R. P. J. Am. Chem. Soc. 2002, 124, 10596.
16. Meyer, T. E. Biochim. Biophys. Acta 1985, 806, 175.
17. Baca, M.; Borgstahl, G. E. O.; Boissinot, M.; Burke, P. M.; Williams, D. R.; Slater, K. A; Getzoff, E. D. Biochemistry 1994, 33, 14369-14377.
18. Borgstohl, G. E. O.; Williams, D. R.; Getzoff, E. D. Biochemistry 1995, 34, 6278-6287.
19. Hoff, W. D.; Düx, P.; Hård, K.; Devreese, B.; Nugteren-Roodzant, I. M.; Crielaard, W.; Boelens, R.; Kaptein, R.; van Beeumen, J.; Hellingwerf, K. J. Biochemistry 1994, 33, 13959-13962.
20. Hoff, W. D.; van Stokkum, I. H. M.; van Ramesdonk, H. J.; van Brederode, M. E.; Brouwer, A M.; Fitch, J. C.; Meyer, T. E.; van Grondelle, R.; Hellingwerf, K. J. Biophys. J. 1994, 67, 1691-1705.
21. Kort, R.; Vonk, H.; Xu, X.; Hoff, W. D.; Crielaard, W.; Hellingwerf, K. J. FEBS Lett. 1996, 382, 73-78.
22. Genick, U. K; Borgstahl, G. E. O.; Ng, K.; Ren, Z.; Pradervand, C.; Burke, P. M.; Šrajer, V.; Teng, T.; Schildkamp, W.; McRee, D.E.; Moffat, K.; Getzoff, E. D. Science 1997, 275, 1471-1475.
23. Brudler, R.; Rammelsberg, R.; Woo, T. T.; Getzoff, E. D.; Gerwert, K. Nat. Struct. Biol. 2001, 8, 265-270.
24. Düx, P.; Rubinstenn, G.; Vuister, G. W.; Boelens, R.; Mulder, F. A. A.; Hård, K.; Hoff, W. D.; Kroon, A. R.; Crielaard, W.; Hellingwerf, K. J.; Kaptein, R. Biochemistry 1998, 37, 12689-12699.
25. Ohnishi, S.; Shimizu, N.; Mihara, K.; Imamoto, Y.; Kataoka, M. Biochemistry 2001, 40, 2854-2859.
26. Rubinstenn, G.; Vuister, G. W.; Mulder, F. A. A.; Düx, P.; Boelens, R.; Hellingwerf, K. J. Kaptein, R. Nat. Struct. Biol. 1998, 5, 568-570.
27. Ujj, L.; Devanathan, S.; Meyer, T. E.; Cusanovich, M. A.; Tollin, G.; Atkinson, G. H. Biophys. J. 1998, 75, 406-412.
28. Hellingwerf, K. J.; Hendriks, J.; Gensch, T. J. Phys. Chem. A 2003, 107, 1082-1094.
29. Takeshita, K.; Hirota, N.; Imamoto, Y.; Kataoka, M.; Tokunaga, F.; Terazima, M. J. Am. Chem. Soc. 2000, 122, 8524-8528.
30. Takeshita, K.; Imamoto, Y.; Kataoka, M.; Tokunaga, F.; Terazima, M. Biochemistry 2001, 41, 3037-3048.
31. Takeshita, K.; Imamoto, Y.; Kataoka, M.; Mihara, K.; Tokunaga, F.; Terazima, M. Biophys. J. 2002, 83, 1567-1577.
32. Eichler, H. J.; Günter, P.; Paul, D. W. Laser-induced Dynamic Gratings; Springer-Verlag: Berlin, 1986.
33. Kogelnik, H. Bell Syst. Technol. J. 1969, 48, 2909.
34. Miller, R. J. D. Annu. Rev. Phys. Chem. 1991, 42, 581.
35. Terazima, M. Adv. Photochem. 1998, 24, 255-338.
36. Terazima, M. J. Photochem. Photobiol. C 2002, 24, 1-28.
37. Sakakura, M.; Yamaguchi, S.; Hirota, N.; Terazima, M. J. Am. Chem. Soc. 2001, 123, 4286-4294.
38. Sakakura, M.; Morishima, I.; Terazima, M. J. Phys. Chem. B 2001, 106, 10424-10434.
39. Sakakura, M.; Morishima, I.; Terazima, M. Biochemistry 2002, 41, 4837-4846.
40. Hara, T.; Hirota, N.; Terazima, M. J. Phys. Chem. 1996, 100, 10194-10200.
41. Nishioku, Y.; Nakagawa, M.; Tsuda, M.; Terazima, M. Biophys. J. 2001, 80, 2922-2927.
42. Terazima, M.; Hirota, N. J. Chem. Phys. 1993, 98, 6257-6262.
43. Nada, T.; Terazima, M. Biophys. J. 2003, 85, 1876-1881.
44. Nishida, S.; Nada, T.; Terazima, M. Biophys. J. 2004, 87, 2663-2675.
45. Meyer, T. E. Biochim. Biophys. Acta 1985, 806, 175-183.
46. Sambrook, J.; Russel, D. W. Molecular Cloning; Cold Spring Harbor Laboratory Press: New York, 2001.
47. Baden, N.; Terazima, M. Chem. Phys. Lett. 2004, 393, 539-545.