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These duplexes were used in our previous studies (ref. [14]) and include a central four base-pair recognition sequence of the M.Taql enzyme.
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These duplexes were used in our previous studies (ref. [14]) and include a central four base-pair recognition sequence of the M.Taql enzyme.
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The values of the binding constants could not be determined from this experiments due to relatively high concentrations, which were necessary to obtain reliable data on the stoichiometry: however, a binding constant of K, 2.5 × 106 M1 (bp) to calf thymus DNA was determined Supporting Information, Figure S1
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1 (bp) to calf thymus DNA was determined (Supporting Information, Figure S1).
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In both cases an increase of absorption in the long-wavelength region of the spectrum, λ>440 nm, was observed at high ligand-to-duplex loadings q>5, which disappeared as further amounts of DNA were added. We attribute this behavior to formation of aggregates of 2 on the exterior of the duplexes, which results in enhanced scattering, but does not lead to precipitation of the ligand-DNA complexes
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