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Volumn 165, Issue 1, 2009, Pages 19-31

Homology, paralogy and function of DGF-1, a highly dispersed Trypanosoma cruzi specific gene family and its implications for information entropy of its encoded proteins

Author keywords

Codon usage; Dispersed gene family 1; Evolution; Integrin like genes; Shannon entropy; Trypanosoma cruzi

Indexed keywords

ADHESIN; BETA7 INTEGRIN; DISPERSED GENE FAMILY 1 PROTEIN; MEMBRANE PROTEIN; PROTEIN; PROTEIN ANTIBODY; UNCLASSIFIED DRUG;

EID: 60649107568     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2008.12.010     Document Type: Article
Times cited : (32)

References (99)
  • 1
    • 0029088874 scopus 로고
    • Natural selection on the peptide-binding regions of major histocompatibility complex molecules
    • Hughes A.L., and Hughes M.K. Natural selection on the peptide-binding regions of major histocompatibility complex molecules. Immunogenetics 42 (1995) 233-243
    • (1995) Immunogenetics , vol.42 , pp. 233-243
    • Hughes, A.L.1    Hughes, M.K.2
  • 2
    • 0344234334 scopus 로고    scopus 로고
    • Differential accumulation of mutations localized in particular domains of the mucin genes expressed in the vertebrate host stage of Trypanosoma cruzi
    • Campo V., Di Noia J.M., Buscaglia C.A., Aguero F., Sanchez D.O., and Frasch A.C. Differential accumulation of mutations localized in particular domains of the mucin genes expressed in the vertebrate host stage of Trypanosoma cruzi. Mol Biochem Parasitol 133 (2004) 81-91
    • (2004) Mol Biochem Parasitol , vol.133 , pp. 81-91
    • Campo, V.1    Di Noia, J.M.2    Buscaglia, C.A.3    Aguero, F.4    Sanchez, D.O.5    Frasch, A.C.6
  • 4
    • 32344434583 scopus 로고    scopus 로고
    • Patterns of sequence evolution at epitopes for host antibodies and cytotoxic T-lymphocytes in human immunodeficiency virus type 1
    • Piontkivska H., and Hughes A.L. Patterns of sequence evolution at epitopes for host antibodies and cytotoxic T-lymphocytes in human immunodeficiency virus type 1. Virus Res 116 (2006) 98-105
    • (2006) Virus Res , vol.116 , pp. 98-105
    • Piontkivska, H.1    Hughes, A.L.2
  • 5
    • 22244453726 scopus 로고    scopus 로고
    • The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
    • El-Sayed N.M., Myler P.J., Bartholomeu D.C., et al. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 309 (2005) 409-415
    • (2005) Science , vol.309 , pp. 409-415
    • El-Sayed, N.M.1    Myler, P.J.2    Bartholomeu, D.C.3
  • 6
    • 0032954204 scopus 로고    scopus 로고
    • Organization of telomeric and sub-telomeric regions of chromosomes from the protozoan parasite Trypanosoma cruzi
    • Chiurillo M.A., Cano I., Da Silveira J.F., and Ramirez J.L. Organization of telomeric and sub-telomeric regions of chromosomes from the protozoan parasite Trypanosoma cruzi. Mol Biochem Parasitol 100 (1999) 173-183
    • (1999) Mol Biochem Parasitol , vol.100 , pp. 173-183
    • Chiurillo, M.A.1    Cano, I.2    Da Silveira, J.F.3    Ramirez, J.L.4
  • 7
    • 0037055282 scopus 로고    scopus 로고
    • An improved general approach for cloning and characterizing telomeres: the protozoan parasite Trypanosoma cruzi as model organism
    • Chiurillo M.A., Santos M.R., Franco Da Silveira J., and Ramirez J.L. An improved general approach for cloning and characterizing telomeres: the protozoan parasite Trypanosoma cruzi as model organism. Gene 294 (2002) 197-204
    • (2002) Gene , vol.294 , pp. 197-204
    • Chiurillo, M.A.1    Santos, M.R.2    Franco Da Silveira, J.3    Ramirez, J.L.4
  • 8
    • 20044387593 scopus 로고    scopus 로고
    • Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres
    • Kim D., Chiurillo M.A., El-Sayed N., et al. Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres. Gene 346 (2005) 153-161
    • (2005) Gene , vol.346 , pp. 153-161
    • Kim, D.1    Chiurillo, M.A.2    El-Sayed, N.3
  • 9
    • 0037245489 scopus 로고    scopus 로고
    • Why are parasite contingency genes often associated with telomeres?
    • Barry J.D., Ginger M.L., Burton P., and McCulloch R. Why are parasite contingency genes often associated with telomeres?. Int J Parasitol 33 (2003) 29-45
    • (2003) Int J Parasitol , vol.33 , pp. 29-45
    • Barry, J.D.1    Ginger, M.L.2    Burton, P.3    McCulloch, R.4
  • 10
    • 0028114017 scopus 로고
    • Host specificity of ribosomal DNA variation in sylvatic Trypanosoma cruzi from North America
    • Clark C.G., and Pung O.J. Host specificity of ribosomal DNA variation in sylvatic Trypanosoma cruzi from North America. Mol Biochem Parasitol 66 (1994) 175-179
    • (1994) Mol Biochem Parasitol , vol.66 , pp. 175-179
    • Clark, C.G.1    Pung, O.J.2
  • 11
    • 27044438191 scopus 로고
    • Population genetics of parasitic protozoa and other microorganisms
    • Tibayrenc M. Population genetics of parasitic protozoa and other microorganisms. Adv Parasitol 36 (1995) 47-115
    • (1995) Adv Parasitol , vol.36 , pp. 47-115
    • Tibayrenc, M.1
  • 13
    • 0031193709 scopus 로고    scopus 로고
    • Trypanosoma cruzi: can activity of the rRNA gene promoter be used as a marker for speciation?
    • Floeter-Winter L.M., Souto R.P., Stolf B.S., Zingales B., and Buck G.A. Trypanosoma cruzi: can activity of the rRNA gene promoter be used as a marker for speciation?. Exp Parasitol 86 (1997) 232-234
    • (1997) Exp Parasitol , vol.86 , pp. 232-234
    • Floeter-Winter, L.M.1    Souto, R.P.2    Stolf, B.S.3    Zingales, B.4    Buck, G.A.5
  • 14
    • 0030910323 scopus 로고    scopus 로고
    • Trypanosoma cruzi strains partition into two groups based on the structure and function of the spliced leader RNA and rRNA gene promoters
    • Nunes L.R., Carvalho M.R.C., and Buck G.A. Trypanosoma cruzi strains partition into two groups based on the structure and function of the spliced leader RNA and rRNA gene promoters. Mol Biochem Parasitol 86 (1997) 211-224
    • (1997) Mol Biochem Parasitol , vol.86 , pp. 211-224
    • Nunes, L.R.1    Carvalho, M.R.C.2    Buck, G.A.3
  • 16
    • 0032720058 scopus 로고    scopus 로고
    • The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogenicity and host specificity
    • Briones M.R., Souto R.P., Stolf B.S., and Zingales B. The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogenicity and host specificity. Mol Biochem Parasitol 104 (1999) 219-232
    • (1999) Mol Biochem Parasitol , vol.104 , pp. 219-232
    • Briones, M.R.1    Souto, R.P.2    Stolf, B.S.3    Zingales, B.4
  • 17
    • 0035207510 scopus 로고    scopus 로고
    • Maximum-likelihood divergence date estimates based on rRNA gene sequences suggest two scenarios of Trypanosoma cruzi intraspecific evolution
    • Kawashita S.Y., Sanson G.F., Fernandes O., Zingales B., and Briones M.R. Maximum-likelihood divergence date estimates based on rRNA gene sequences suggest two scenarios of Trypanosoma cruzi intraspecific evolution. Mol Biol Evol 18 (2001) 2250-2259
    • (2001) Mol Biol Evol , vol.18 , pp. 2250-2259
    • Kawashita, S.Y.1    Sanson, G.F.2    Fernandes, O.3    Zingales, B.4    Briones, M.R.5
  • 18
    • 0033256228 scopus 로고    scopus 로고
    • Recommendations from a satellite meeting
    • Anonymous. Recommendations from a satellite meeting. Mem Inst Oswaldo Cruz 94 Suppl. 1 (1999) 429-432
    • (1999) Mem Inst Oswaldo Cruz , vol.94 , Issue.SUPPL. 1 , pp. 429-432
  • 19
    • 0032720058 scopus 로고    scopus 로고
    • The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogenicity and host specificity
    • Briones M.R.S., Souto R.P., Stolf B.S., and Zingales B. The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogenicity and host specificity. Mol Biochem Parasitol 104 (1999) 219-232
    • (1999) Mol Biochem Parasitol , vol.104 , pp. 219-232
    • Briones, M.R.S.1    Souto, R.P.2    Stolf, B.S.3    Zingales, B.4
  • 20
    • 0033954610 scopus 로고    scopus 로고
    • Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis
    • Brisse S., Barnabe C., and Tibayrenc M. Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis. Int J Parasitol 30 (2000) 35-44
    • (2000) Int J Parasitol , vol.30 , pp. 35-44
    • Brisse, S.1    Barnabe, C.2    Tibayrenc, M.3
  • 21
    • 0033768155 scopus 로고    scopus 로고
    • Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers
    • Brisse S., Dujardin J.C., and Tibayrenc M. Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers. Mol Biochem Parasitol 111 (2000) 95-105
    • (2000) Mol Biochem Parasitol , vol.111 , pp. 95-105
    • Brisse, S.1    Dujardin, J.C.2    Tibayrenc, M.3
  • 22
    • 0034071224 scopus 로고    scopus 로고
    • Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach
    • Barnabe C., Brisse S., and Tibayrenc M. Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach. Parasitology 120 Pt 5 (2000) 513-526
    • (2000) Parasitology , vol.120 , Issue.PART 5 , pp. 513-526
    • Barnabe, C.1    Brisse, S.2    Tibayrenc, M.3
  • 23
    • 0034881536 scopus 로고    scopus 로고
    • Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages
    • Brisse S., Verhoef J., and Tibayrenc M. Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages. Int J Parasitol 31 (2001) 1218-1226
    • (2001) Int J Parasitol , vol.31 , pp. 1218-1226
    • Brisse, S.1    Verhoef, J.2    Tibayrenc, M.3
  • 24
    • 0031952665 scopus 로고    scopus 로고
    • Molecular epidemiology of American trypanosomiasis in Brazil based on dimorphisms of rRNA and mini-exon gene sequences
    • Zingales B., Souto R.P., Mangia R.H., et al. Molecular epidemiology of American trypanosomiasis in Brazil based on dimorphisms of rRNA and mini-exon gene sequences. Int J Parasitol 28 (1998) 105-112
    • (1998) Int J Parasitol , vol.28 , pp. 105-112
    • Zingales, B.1    Souto, R.P.2    Mangia, R.H.3
  • 25
    • 0031267761 scopus 로고    scopus 로고
    • Biological parameters and molecular markers of clone CL Brener-the reference organism of the Trypanosoma cruzi genome project
    • Zingales B., Pereira M.E., Almeida K.A., et al. Biological parameters and molecular markers of clone CL Brener-the reference organism of the Trypanosoma cruzi genome project. Mem Inst Oswaldo Cruz 92 (1997) 811-814
    • (1997) Mem Inst Oswaldo Cruz , vol.92 , pp. 811-814
    • Zingales, B.1    Pereira, M.E.2    Almeida, K.A.3
  • 26
    • 0035912819 scopus 로고    scopus 로고
    • Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi
    • Machado C.A., and Ayala F.J. Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proc Natl Acad Sci 98 (2001) 7396-7401
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 7396-7401
    • Machado, C.A.1    Ayala, F.J.2
  • 27
    • 0037468185 scopus 로고    scopus 로고
    • Mechanism of genetic exchange in American trypanosomes
    • Gaunt M.W., Yeo M., Frame I.A., et al. Mechanism of genetic exchange in American trypanosomes. Nature 421 (2003) 936-939
    • (2003) Nature , vol.421 , pp. 936-939
    • Gaunt, M.W.1    Yeo, M.2    Frame, I.A.3
  • 28
    • 33644852003 scopus 로고    scopus 로고
    • Trypanosoma cruzi 5S rRNA arrays define five groups and indicate the geographic origins of an ancestor of the heterozygous hybrids
    • Westenberger S.J., Sturm N.R., and Campbell D.A. Trypanosoma cruzi 5S rRNA arrays define five groups and indicate the geographic origins of an ancestor of the heterozygous hybrids. Int J Parasitol 36 (2006) 337-346
    • (2006) Int J Parasitol , vol.36 , pp. 337-346
    • Westenberger, S.J.1    Sturm, N.R.2    Campbell, D.A.3
  • 29
    • 0037241821 scopus 로고    scopus 로고
    • Two types of ribosomal RNA genes in hybrid Trypanosoma cruzi strains
    • Stolf B.S., Souto R.P., Pedroso A., and Zingales B. Two types of ribosomal RNA genes in hybrid Trypanosoma cruzi strains. Mol Biochem Parasitol 126 (2003) 73-80
    • (2003) Mol Biochem Parasitol , vol.126 , pp. 73-80
    • Stolf, B.S.1    Souto, R.P.2    Pedroso, A.3    Zingales, B.4
  • 30
    • 14744285421 scopus 로고    scopus 로고
    • Comparative analysis of genomic sequences suggests that Trypanosoma cruzi CL Brener contains two sets of non-intercalated repeats of satellite DNA that correspond to T. cruzi I and T. cruzi II types
    • Elias M.C., Vargas N., Tomazi L., et al. Comparative analysis of genomic sequences suggests that Trypanosoma cruzi CL Brener contains two sets of non-intercalated repeats of satellite DNA that correspond to T. cruzi I and T. cruzi II types. Mol Biochem Parasitol 140 (2005) 221-227
    • (2005) Mol Biochem Parasitol , vol.140 , pp. 221-227
    • Elias, M.C.1    Vargas, N.2    Tomazi, L.3
  • 31
    • 0025358544 scopus 로고
    • Characterization of a Trypanosoma cruzi specific nuclear repeated sequence
    • Wincker P., Roizes G., and Goldenberg S. Characterization of a Trypanosoma cruzi specific nuclear repeated sequence. Mol Biochem Parasitol 41 (1990) 147-152
    • (1990) Mol Biochem Parasitol , vol.41 , pp. 147-152
    • Wincker, P.1    Roizes, G.2    Goldenberg, S.3
  • 32
    • 0026726313 scopus 로고
    • Nucleotide sequence of a representative member of a Trypanosoma cruzi dispersed gene family
    • Wincker P., Murto-Dovales A.N., and Goldenberg S. Nucleotide sequence of a representative member of a Trypanosoma cruzi dispersed gene family. Mol Biochem Parasitol 55 (1992) 217-220
    • (1992) Mol Biochem Parasitol , vol.55 , pp. 217-220
    • Wincker, P.1    Murto-Dovales, A.N.2    Goldenberg, S.3
  • 33
    • 33845400905 scopus 로고    scopus 로고
    • Glycoproteomics of Trypanosoma cruzi trypomastigotes using subcellular fractionation, lectin affinity, and stable isotope labeling
    • Atwood III J.A., Minning T., Ludolf F., et al. Glycoproteomics of Trypanosoma cruzi trypomastigotes using subcellular fractionation, lectin affinity, and stable isotope labeling. J Proteome Res 5 (2006) 3376-3384
    • (2006) J Proteome Res , vol.5 , pp. 3376-3384
    • Atwood III, J.A.1    Minning, T.2    Ludolf, F.3
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12 (1996) 543-548
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 (1987) 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks
    • Bryant D., and Moulton V. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21 (2004) 255-265
    • (2004) Mol Biol Evol , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 39
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 40
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones D.T., Taylor W.R., and Thornton J.M. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8 (1992) 275-282
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 41
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: analyzing and visualizing evolutionary data
    • Huson D.H. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14 (1998) 68-73
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 42
    • 0034199476 scopus 로고    scopus 로고
    • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • Stothard P. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28 (2000) 1102, 04
    • (2000) Biotechniques , vol.28
    • Stothard, P.1
  • 43
    • 9144264843 scopus 로고    scopus 로고
    • GeneDB: a resource for prokaryotic and eukaryotic organisms
    • Hertz-Fowler C., Peacock C.S., Wood V., et al. GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res 32 (2004) D339-D343
    • (2004) Nucleic Acids Res , vol.32
    • Hertz-Fowler, C.1    Peacock, C.S.2    Wood, V.3
  • 45
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 623-656
    • Shannon C.E. A mathematical theory of communication. Bell System Tech J 27 (1948) 379-423 623-656
    • (1948) Bell System Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 46
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R., Attwood T.K., Bairoch A., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29 (2001) 37-40
    • (2001) Nucleic Acids Res , vol.29 , pp. 37-40
    • Apweiler, R.1    Attwood, T.K.2    Bairoch, A.3
  • 47
    • 33747871141 scopus 로고    scopus 로고
    • TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
    • Alako B.T., Rainey D., Nijveen H., and Leunissen J.A. TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. Nucleic Acids Res 34 (2006) W104-W109
    • (2006) Nucleic Acids Res , vol.34
    • Alako, B.T.1    Rainey, D.2    Nijveen, H.3    Leunissen, J.A.4
  • 49
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang J., Rosenberg H.F., and Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci U S A 95 (1998) 3708-3713
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 50
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24 (2007) 1596-1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 51
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: hypothesis testing using phylogenies
    • Pond S.L., Frost S.D., and Muse S.V. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21 (2005) 676-679
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.1    Frost, S.D.2    Muse, S.V.3
  • 52
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D., Agajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res 8 (1998) 195-202
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Agajian, C.2    Green, P.3
  • 53
    • 0344352478 scopus 로고    scopus 로고
    • Oligopeptidase B-dependent signaling mediates host cell invasion by Trypanosoma cruzi
    • Caler E.V., Vaena de Avalos S., Haynes P.A., Andrews N.W., and Burleigh B.A. Oligopeptidase B-dependent signaling mediates host cell invasion by Trypanosoma cruzi. EMBO J 17 (1998) 4975-4986
    • (1998) EMBO J , vol.17 , pp. 4975-4986
    • Caler, E.V.1    Vaena de Avalos, S.2    Haynes, P.A.3    Andrews, N.W.4    Burleigh, B.A.5
  • 54
    • 33748151319 scopus 로고    scopus 로고
    • Involvement of Ssp-4-related carbohydrate epitopes in mammalian cell invasion by Trypanosoma cruzi amastigotes
    • da Silva C.V., Luquetti A.O., Rassi A., and Mortara R.A. Involvement of Ssp-4-related carbohydrate epitopes in mammalian cell invasion by Trypanosoma cruzi amastigotes. Microb Infect 8 (2006) 2120-2129
    • (2006) Microb Infect , vol.8 , pp. 2120-2129
    • da Silva, C.V.1    Luquetti, A.O.2    Rassi, A.3    Mortara, R.A.4
  • 55
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 56
    • 0009482260 scopus 로고
    • Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications
    • Towbin H., Staehelin T., and Gordon J. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A 76 (1979) 4350-4354
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 4350-4354
    • Towbin, H.1    Staehelin, T.2    Gordon, J.3
  • 58
    • 0029970097 scopus 로고    scopus 로고
    • Maximum-likelihood models for combined analyses of multiple sequence data
    • Yang Z. Maximum-likelihood models for combined analyses of multiple sequence data. J Mol Evol 42 (1996) 587-596
    • (1996) J Mol Evol , vol.42 , pp. 587-596
    • Yang, Z.1
  • 59
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: trees grafting into networks
    • Posada D., and Crandall K.A. Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16 (2001) 37-45
    • (2001) Trends Ecol Evol , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 60
    • 0031688287 scopus 로고    scopus 로고
    • Structure and evolution of parallel beta-helix proteins
    • Jenkins J., Mayans O., and Pickersgill R. Structure and evolution of parallel beta-helix proteins. J Struct Biol 122 (1998) 236-246
    • (1998) J Struct Biol , vol.122 , pp. 236-246
    • Jenkins, J.1    Mayans, O.2    Pickersgill, R.3
  • 61
    • 0024284211 scopus 로고
    • Structure and function of epidermal growth factor-like regions in proteins
    • Appella E., Weber I.T., and Blasi F. Structure and function of epidermal growth factor-like regions in proteins. FEBS Lett 231 (1988) 1-4
    • (1988) FEBS Lett , vol.231 , pp. 1-4
    • Appella, E.1    Weber, I.T.2    Blasi, F.3
  • 62
    • 0032792551 scopus 로고    scopus 로고
    • The ankyrin repeat: a diversity of interactions on a common structural framework
    • Sedgwick S.G., and Smerdon S.J. The ankyrin repeat: a diversity of interactions on a common structural framework. Trends Biochem Sci 24 (1999) 311-316
    • (1999) Trends Biochem Sci , vol.24 , pp. 311-316
    • Sedgwick, S.G.1    Smerdon, S.J.2
  • 63
    • 33845934490 scopus 로고    scopus 로고
    • Ankyrin repeat: a unique motif mediating protein-protein interactions
    • Li J., Mahajan A., and Tsai M.D. Ankyrin repeat: a unique motif mediating protein-protein interactions. Biochemistry 45 (2006) 15168-15178
    • (2006) Biochemistry , vol.45 , pp. 15168-15178
    • Li, J.1    Mahajan, A.2    Tsai, M.D.3
  • 64
    • 0030029971 scopus 로고    scopus 로고
    • Cloning and expression of a gene encoding an integrin-like protein in Candida albicans
    • Gale C., Finkel D., Tao N., et al. Cloning and expression of a gene encoding an integrin-like protein in Candida albicans. Proc Natl Acad Sci U S A 93 (1996) 357-361
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 357-361
    • Gale, C.1    Finkel, D.2    Tao, N.3
  • 65
    • 33744779627 scopus 로고    scopus 로고
    • An adhesion molecule in free-living Dictyostelium amoebae with integrin beta features
    • Cornillon S., Gebbie L., Benghezal M., et al. An adhesion molecule in free-living Dictyostelium amoebae with integrin beta features. EMBO Rep 7 (2006) 617-621
    • (2006) EMBO Rep , vol.7 , pp. 617-621
    • Cornillon, S.1    Gebbie, L.2    Benghezal, M.3
  • 66
    • 0026485306 scopus 로고
    • Role of transmembrane domain interactions in the assembly of class II MHC molecules
    • Cosson P., and Bonifacino J.S. Role of transmembrane domain interactions in the assembly of class II MHC molecules. Science 258 (1992) 659-662
    • (1992) Science , vol.258 , pp. 659-662
    • Cosson, P.1    Bonifacino, J.S.2
  • 67
    • 0034711953 scopus 로고    scopus 로고
    • The GxxxG motif: a framework for transmembrane helix-helix association
    • Russ W.P., and Engelman D.M. The GxxxG motif: a framework for transmembrane helix-helix association. J Mol Biol 296 (2000) 911-919
    • (2000) J Mol Biol , vol.296 , pp. 911-919
    • Russ, W.P.1    Engelman, D.M.2
  • 68
    • 1642396353 scopus 로고    scopus 로고
    • Involvement of transmembrane domain interactions in signal transduction by alpha/beta integrins
    • Schneider D., and Engelman D.M. Involvement of transmembrane domain interactions in signal transduction by alpha/beta integrins. J Biol Chem 279 (2004) 9840-9846
    • (2004) J Biol Chem , vol.279 , pp. 9840-9846
    • Schneider, D.1    Engelman, D.M.2
  • 69
    • 0028961335 scopus 로고
    • SCOP: a structural classification of proteins database for the investigation of sequences and structures
    • Murzin A.G., Brenner S.E., Hubbard T., and Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247 (1995) 536-540
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 70
    • 0028172534 scopus 로고
    • The immunoglobulin fold. Structural classification, sequence patterns and common core
    • Bork P., Holm L., and Sander C. The immunoglobulin fold. Structural classification, sequence patterns and common core. J Mol Biol 242 (1994) 309-320
    • (1994) J Mol Biol , vol.242 , pp. 309-320
    • Bork, P.1    Holm, L.2    Sander, C.3
  • 71
    • 0031979387 scopus 로고    scopus 로고
    • The immunoglobulin superfamily: an insight on its tissular, species, and functional diversity
    • Halaby D.M., and Mornon J.P. The immunoglobulin superfamily: an insight on its tissular, species, and functional diversity. J Mol Evol 46 (1998) 389-400
    • (1998) J Mol Evol , vol.46 , pp. 389-400
    • Halaby, D.M.1    Mornon, J.P.2
  • 72
    • 34548133728 scopus 로고    scopus 로고
    • Predicting functionally important residues from sequence conservation
    • Capra J.A., and Singh M. Predicting functionally important residues from sequence conservation. Bioinformatics 23 (2007) 1875-1882
    • (2007) Bioinformatics , vol.23 , pp. 1875-1882
    • Capra, J.A.1    Singh, M.2
  • 73
    • 0032776802 scopus 로고    scopus 로고
    • Trypanosoma cruzi: monoclonal antibodies to the surface glycoprotein superfamily differentiate subsets of the 85-kDa surface glycoproteins and confirm simultaneous expression of variant 85-kDa surface glycoproteins
    • Kahn S.J., Nguyen D., Norsen J., Wleklinski M., Granston T., and Kahn M. Trypanosoma cruzi: monoclonal antibodies to the surface glycoprotein superfamily differentiate subsets of the 85-kDa surface glycoproteins and confirm simultaneous expression of variant 85-kDa surface glycoproteins. Exp Parasitol 92 (1999) 48-56
    • (1999) Exp Parasitol , vol.92 , pp. 48-56
    • Kahn, S.J.1    Nguyen, D.2    Norsen, J.3    Wleklinski, M.4    Granston, T.5    Kahn, M.6
  • 74
    • 0028893838 scopus 로고
    • How often do duplicated genes evolve new functions?
    • Walsh J.B. How often do duplicated genes evolve new functions?. Genetics 139 (1995) 421-428
    • (1995) Genetics , vol.139 , pp. 421-428
    • Walsh, J.B.1
  • 75
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 76
    • 0035697435 scopus 로고    scopus 로고
    • The probability of preservation of a newly arisen gene duplicate
    • Lynch M., O'Hely M., Walsh B., and Force A. The probability of preservation of a newly arisen gene duplicate. Genetics 159 (2001) 1789-1804
    • (2001) Genetics , vol.159 , pp. 1789-1804
    • Lynch, M.1    O'Hely, M.2    Walsh, B.3    Force, A.4
  • 77
    • 0347364640 scopus 로고    scopus 로고
    • The early stages of duplicate gene evolution
    • Moore R.C., and Purugganan M.D. The early stages of duplicate gene evolution. Proc Natl Acad Sci U S A 100 (2003) 15682-15687
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 15682-15687
    • Moore, R.C.1    Purugganan, M.D.2
  • 78
    • 0642373709 scopus 로고    scopus 로고
    • Different evolutionary patterns between young duplicate genes in the human genome
    • Zhang P., Gu Z., and Li W.H. Different evolutionary patterns between young duplicate genes in the human genome. Genome Biol 4 (2003) R56
    • (2003) Genome Biol , vol.4
    • Zhang, P.1    Gu, Z.2    Li, W.H.3
  • 79
    • 38449119517 scopus 로고    scopus 로고
    • Gene duplication: a drive for phenotypic diversity and cause of human disease
    • Conrad B., and Antonarakis S.E. Gene duplication: a drive for phenotypic diversity and cause of human disease. Annu Rev Genomics Hum Genet 8 (2007) 17-35
    • (2007) Annu Rev Genomics Hum Genet , vol.8 , pp. 17-35
    • Conrad, B.1    Antonarakis, S.E.2
  • 80
    • 34548531720 scopus 로고    scopus 로고
    • In silico, biologically-inspired modelling of genomic variation generation in surface proteins of Trypanosoma cruzi
    • Azuaje F.J., Ramirez J.L., and Da Silveira J.F. In silico, biologically-inspired modelling of genomic variation generation in surface proteins of Trypanosoma cruzi. Kinetoplastid Biol Dis 6 (2007) 6
    • (2007) Kinetoplastid Biol Dis , vol.6 , pp. 6
    • Azuaje, F.J.1    Ramirez, J.L.2    Da Silveira, J.F.3
  • 81
    • 0026770377 scopus 로고
    • Integrins: versatility, modulation, and signaling in cell adhesion
    • Hynes R.O. Integrins: versatility, modulation, and signaling in cell adhesion. Cell 69 (1992) 11-25
    • (1992) Cell , vol.69 , pp. 11-25
    • Hynes, R.O.1
  • 82
    • 0028335948 scopus 로고
    • Anchorage dependence, integrins, and apoptosis
    • Ruoslahti E., and Reed J.C. Anchorage dependence, integrins, and apoptosis. Cell 77 (1994) 477-478
    • (1994) Cell , vol.77 , pp. 477-478
    • Ruoslahti, E.1    Reed, J.C.2
  • 83
    • 0037145037 scopus 로고    scopus 로고
    • Integrins: bidirectional, allosteric signaling machines
    • Hynes R.O. Integrins: bidirectional, allosteric signaling machines. Cell 110 (2002) 673-687
    • (2002) Cell , vol.110 , pp. 673-687
    • Hynes, R.O.1
  • 84
    • 0029103065 scopus 로고
    • Antigenic and functional conservation of an integrin I-domain in Saccharomyces cerevisiae
    • Hostetter M.K., Tao N.J., Gale C., et al. Antigenic and functional conservation of an integrin I-domain in Saccharomyces cerevisiae. Biochem Mol Med 55 (1995) 122-130
    • (1995) Biochem Mol Med , vol.55 , pp. 122-130
    • Hostetter, M.K.1    Tao, N.J.2    Gale, C.3
  • 85
    • 0031855693 scopus 로고    scopus 로고
    • Regulation of adherence and virulence by the Entamoeba histolytica lectin cytoplasmic domain, which contains a beta2 integrin motif
    • Vines R.R., Ramakrishnan G., Rogers J.B., Lockhart L.A., Mann B.J., and Petri Jr. W.A. Regulation of adherence and virulence by the Entamoeba histolytica lectin cytoplasmic domain, which contains a beta2 integrin motif. Mol Biol Cell 9 (1998) 2069-2079
    • (1998) Mol Biol Cell , vol.9 , pp. 2069-2079
    • Vines, R.R.1    Ramakrishnan, G.2    Rogers, J.B.3    Lockhart, L.A.4    Mann, B.J.5    Petri Jr., W.A.6
  • 86
    • 0033735474 scopus 로고    scopus 로고
    • Monoclonal antibody specific to the beta1 integrin-like molecule (140 kDa) immunoprecipitates a protein complex of Entamoeba histolytica
    • Sengupta K., Hernandez-Ramirez V.I., and Talamas-Rohana P. Monoclonal antibody specific to the beta1 integrin-like molecule (140 kDa) immunoprecipitates a protein complex of Entamoeba histolytica. Arch Med Res 31 (2000) S147-S148
    • (2000) Arch Med Res , vol.31
    • Sengupta, K.1    Hernandez-Ramirez, V.I.2    Talamas-Rohana, P.3
  • 87
    • 0038824674 scopus 로고    scopus 로고
    • Entamoeba histolytica: a b1 integrin-like fibronectin receptor assembles a signaling complex similar to those of mammalian cells
    • Flores-Robles D., Rosales C., Rosales-Encina J.L., and Talamás-Rohana P. Entamoeba histolytica: a b1 integrin-like fibronectin receptor assembles a signaling complex similar to those of mammalian cells. Exp Parasitol 103 (2003) 8-15
    • (2003) Exp Parasitol , vol.103 , pp. 8-15
    • Flores-Robles, D.1    Rosales, C.2    Rosales-Encina, J.L.3    Talamás-Rohana, P.4
  • 88
    • 0025194464 scopus 로고
    • Recognition of a bacterial adhesion by an integrin: macrophage CR3 (alpha M beta 2, CD11b/CD18) binds filamentous hemagglutinin of Bordetella pertussis
    • Relman D., Tuomanen E., Falkow S., Golenbock D.T., Saukkonen K., and Wright S.D. Recognition of a bacterial adhesion by an integrin: macrophage CR3 (alpha M beta 2, CD11b/CD18) binds filamentous hemagglutinin of Bordetella pertussis. Cell 61 (1990) 1375-1382
    • (1990) Cell , vol.61 , pp. 1375-1382
    • Relman, D.1    Tuomanen, E.2    Falkow, S.3    Golenbock, D.T.4    Saukkonen, K.5    Wright, S.D.6
  • 89
    • 2942641961 scopus 로고    scopus 로고
    • Trypanosoma cruzi-cardiomyocyte interaction: role of fibronectin in the recognition process and extracellular matrix expression in vitro and in vivo
    • Calvet C.M., Meuser M., Almeida D., Meirelles M.N., and Pereira M.C. Trypanosoma cruzi-cardiomyocyte interaction: role of fibronectin in the recognition process and extracellular matrix expression in vitro and in vivo. Exp Parasitol 107 (2004) 20-30
    • (2004) Exp Parasitol , vol.107 , pp. 20-30
    • Calvet, C.M.1    Meuser, M.2    Almeida, D.3    Meirelles, M.N.4    Pereira, M.C.5
  • 90
    • 0025053993 scopus 로고
    • High level transcription of the glucocerebrosidase pseudogene in normal subjects and patients with Gaucher disease
    • Sorge J., Gross E., West C., and Beutler E. High level transcription of the glucocerebrosidase pseudogene in normal subjects and patients with Gaucher disease. J Clin Invest 86 (1990) 1137-1141
    • (1990) J Clin Invest , vol.86 , pp. 1137-1141
    • Sorge, J.1    Gross, E.2    West, C.3    Beutler, E.4
  • 92
    • 0028967424 scopus 로고
    • An aromatase pseudogene is transcribed in the bovine placenta
    • Furbass R., and Vanselow J. An aromatase pseudogene is transcribed in the bovine placenta. Gene 154 (1995) 287-291
    • (1995) Gene , vol.154 , pp. 287-291
    • Furbass, R.1    Vanselow, J.2
  • 97
    • 0030888108 scopus 로고    scopus 로고
    • Directionality principles in thermodynamics and evolution
    • Demetrius L. Directionality principles in thermodynamics and evolution. Proc Natl Acad Sci U S A 94 (1997) 3491-3498
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 3491-3498
    • Demetrius, L.1
  • 98
    • 60649091710 scopus 로고    scopus 로고
    • Non-equilibrium thermodynamics
    • Pierce S.E. Non-equilibrium thermodynamics. Cross Bound - Interdis J 1 (2002) 49-59
    • (2002) Cross Bound - Interdis J , vol.1 , pp. 49-59
    • Pierce, S.E.1
  • 99
    • 33750024753 scopus 로고    scopus 로고
    • On the logical relationship between natural selection and self-organization
    • Hoelzer G.A., Smith E., and Pepper J.W. On the logical relationship between natural selection and self-organization. J Evol Biol 19 (2006) 1785-1794
    • (2006) J Evol Biol , vol.19 , pp. 1785-1794
    • Hoelzer, G.A.1    Smith, E.2    Pepper, J.W.3


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