Human coronaviruses;Coronavirus humains (HCoV)

Pathologie Biologie

Volumn 57, Issue 2, 2009, Pages 149-160

  Vabret, A ^a   Dina, J ^a   Brison, E ^a   Brouard, J ^b   Freymuth, F ^a  

^a UNIVERSITÉ DE CAEN   (France)

^b CAEN UNIVERSITY HOSPITAL   (France)

Author keywords

Barrier species; Coronavirus; Epidemic circulation; Evolution; Molecular assays; Respiratory infection; Severe respiratory acute syndrome (SARS)

Indexed keywords

CORONAVIRUS; EVOLUTIONARY ADAPTATION; GEOGRAPHIC DISTRIBUTION; HUMAN; MOLECULAR EVOLUTION; NONHUMAN; PREVALENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; SARS CORONAVIRUS; VIRUS DETECTION; VIRUS GENOME; VIRUS INFECTION; VIRUS MORPHOLOGY; VIRUS REPLICATION; VIRUS STRAIN; VIRUS TRANSMISSION;

ANIMALS; ASIA; BIRD DISEASES; CORONAVIRUS; CORONAVIRUS INFECTIONS; DISEASE TRANSMISSION, INFECTIOUS; GENOME, VIRAL; HEPATITIS, VIRAL, ANIMAL; HUMANS; MAMMALS; NORTH AMERICA; SARS VIRUS; SEVERE ACUTE RESPIRATORY SYNDROME;

EID: 60649094291     PISSN: 03698114     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.patbio.2008.02.018     Document Type: Review

References (95)

1. Huang Y., Lau S.K., Woo P.C., and Yuen K.Y. CoVDB: a comprehensive database for comparative analysis of coronavirus genes and genomes. Nucleic Acids Res (2007) 1362-4962 Electronic
2. Almeida J.D., and Tyrrell D.A. The morphology of three previously uncharacterized human respiratory viruses that grow in organ culture. J Gen Virol 1 2 (1967) 175-178
3. Hamre D., and Procknow J.J. A new virus isolated from the human respiratory tract. Proc Soc Exp Biol Med 121 1 (1966) 190-193
4. McIntosh K., Dees J.H., Becker W.B., Kapikian A.Z., and Chanock R.M. Recovery in tracheal organ cultures of novel viruses from patients with respiratory disease. Proc Natl Acad Sci USA 57 4 (1967) 933-940
5. Cavanagh D. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch Virol 142 3 (1997) 629-633
6. Gonzalez J.M., Gomez-Puertas P., Cavanagh D., Gorbalenya A.E., and Enjuanes L. A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Arch Virol 148 11 (2003) 2207-2235
7. Drosten C., Gunther S., Preiser W., van der Werf S., Brodt H.R., Becker S., et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med 348 20 (2003) 1967-1976
8. Rota P.A., Oberste M.S., Monroe S.S., Nix W.A., Campagnoli R., Icenogle J.P., et al. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science 300 5624 (2003) 1394-1399
9. van der Hoek L., Pyrc K., Jebbink M.F., Vermeulen-Oost W., Berkhout R.J., Wolthers K.C., et al. Identification of a new human coronavirus. Nat Med 10 4 (2004) 368-373
10. Woo P.C., Lau S.K., Chu C.M., Chan K.H., Tsoi H.W., Huang Y., et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J Virol 79 2 (2005) 884-895
11. Wentworth DE HK. Coronavirus binding and entry. In: V. T, ed. Coronaviruses Molecular and cellular biology. Norfolk, UK: Caister Academic Press, 2007:3-31.
12. Hofmann H., Pyrc K., van der Hoek L., Geier M., Berkhout B., and Pohlmann S. Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry. Proc Natl Acad Sci USA 102 22 (2005) 7988-7993
13. Li W., Moore M.J., Vasilieva N., Sui J., Wong S.K., Berne M.A., et al. Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus. Nature 426 6965 (2003) 450-454
14. Yeager C.L., Ashmun R.A., Williams R.K., Cardellichio C.B., Shapiro L.H., Look A.T., et al. Human aminopeptidase N is a receptor for human coronavirus 229E. Nature 357 6377 (1992) 420-422
15. Gallagher T.M., and Buchmeier M.J. Coronavirus spike proteins in viral entry and pathogenesis. Virology 279 2 (2001) 371-374
16. Kubo H., Yamada Y.K., and Taguchi F. Localization of neutralizing epitopes and the receptor-binding site within the amino-terminal 330 amino acids of the murine coronavirus spike protein. J Virol 68 9 (1994) 5403-5410
17. Wong S.K., Li W., Moore M.J., Choe H., and Farzan M. A 193-amino acid fragment of the SARS coronavirus S protein efficiently binds angiotensin-converting enzyme 2. J Biol Chem 279 5 (2004) 3197-3201
18. Li W., Sui J., Huang I.C., Kuhn J.H., Radoshitzky S.R., Marasco W.A., et al. The S proteins of human coronavirus NL63 and severe acute respiratory syndrome coronavirus bind overlapping regions of ACE2. Virology 367 2 (2007) 367-374
19. Brian DA KT. The Coronavirus Hemagglutinin-esterase Glycoprotein. In: S S, ed. The Coronaviridae. New-York: Plenum Press, 1995.
20. Kazi L., Lissenberg A., Watson R., de Groot R.J., and Weiss S.R. Expression of hemagglutinin esterase protein from recombinant mouse hepatitis virus enhances neurovirulence. J Virol 79 24 (2005) 15064-15073
21. Kienzle T.E., Abraham S., Hogue B.G., and Brian D.A. Structure and expression of the bovine coronavirus hemagglutinin protein. Adv Exp Med Biol 276 (1990) 95-102
22. Lissenberg A., Vrolijk M.M., van Vliet A.L., Langereis M.A., de Groot-Mijnes J.D., Rottier P.J., et al. Luxury at a cost? Recombinant mouse hepatitis viruses expressing the accessory hemagglutinin esterase protein display reduced fitness in vitro. J Virol 79 24 (2005) 15054-15063
23. Yokomori K., Banner L.R., and Lai M.M. Heterogeneity of gene expression of the hemagglutinin-esterase (HE) protein of murine coronaviruses. Virology 183 2 (1991) 647-657
24. Vlasak R., Luytjes W., Spaan W., and Palese P. Human and bovine coronaviruses recognize sialic acid-containing receptors similar to those of influenza C viruses. Proc Natl Acad Sci USA 85 12 (1988) 4526-4529
25. Zhang X.M., Kousoulas K.G., and Storz J. The hemagglutinin/esterase gene of human coronavirus strain OC43: phylogenetic relationships to bovine and murine coronaviruses and influenza C virus. Virology 186 1 (1992) 318-323
26. Krempl C., Schultze B., and Herrler G. Analysis of cellular receptors for human coronavirus OC43. Adv Exp Med Biol 380 (1995) 371-374
27. Schwegmann-Wessels C., and Herrler G. Sialic acids as receptor determinants for coronaviruses. Glycoconj J 23 1-2 (2006) 51-58
28. Enjuanes LSI, Zuniga S, Moreno JL. Coronavirus RNA synthesis: transcription. In: V T, ed. Coronaviruses Molecular and Cellular Biology. Norkolk, UK: Caister Academic Press 2007;81-107.
29. Lai M.M., and Cavanagh D. The molecular biology of coronaviruses. Adv Virus Res 48 (1997) 1-100
30. Ziebuhr J SE. The Coronavirus replicase gene: special enzymes for special viruses. In: V T, ed. Coronaviruses Molecular and Cellular Biology. Norfolk, UK: Caister Academic Press, 2007:33-63.
31. Adami C., Pooley J., Glomb J., Stecker E., Fazal F., Fleming J.O., et al. Evolution of mouse hepatitis virus (MHV) during chronic infection: quasispecies nature of the persisting MHV RNA. Virology 209 2 (1995) 337-346
32. Jackwood M.W., Hilt D.A., and Callison S.A. Detection of infectious bronchitis virus by real-time reverse transcriptase-polymerase chain reaction and identification of a quasispecies in the Beaudette strain. Avian Dis 47 3 (2003) 718-724
33. Kiss I., Kecskemeti S., Tanyi J., Klingeborn B., and Belak S. Preliminary studies on feline coronavirus distribution in naturally and experimentally infected cats. Res Vet Sci 68 3 (2000) 237-242
34. Rowe C.L., Baker S.C., Nathan M.J., Sgro J.Y., Palmenberg A.C., and Fleming J.O. Quasispecies development by high frequency RNA recombination during MHV persistence. Adv Exp Med Biol 440 (1998) 759-765
35. Vabret A., Dina J., Mourez T., Gouarin S., Petitjean J., van der Werf S., et al. Inter- and intra-variant genetic heterogeneity of human coronavirus OC43 strains in France. J Gen Virol 87 Pt 11 (2006) 3349-3353
36. Laude H.D.B., and Eleouet J.F. Le coronavirus porcin PRCV: un virus émergent pas comme les autres. Virologie 2 (1998) 305-316
37. Herrewegh A.A., Smeenk I., Horzinek M.C., Rottier P.J., and de Groot R.J. Feline coronavirus type II strains 79-1683 and 79-1146 originate from a double recombination between feline coronavirus type I and canine coronavirus. J Virol 72 5 (1998) 4508-4514
38. Vijgen L., Keyaerts E., Lemey P., Maes P., Van Reeth K., Nauwynck H., et al. Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43. J Virol 80 14 (2006) 7270-7274
39. Vijgen L., Keyaerts E., Lemey P., Moes E., Li S., Vandamme A.M., et al. Circulation of genetically distinct contemporary human coronavirus OC43 strains. Virology 337 1 (2005) 85-92
40. Vijgen L., Keyaerts E., Moes E., Thoelen I., Wollants E., Lemey P., et al. Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J Virol 79 3 (2005) 1595-1604
41. Decaro N., Martella V., Elia G., Campolo M., Maril V., Desario C., et al. Biological and genetic analysis of a bovine-like coronavirus isolated from water buffalo (Bubalus bubalis) calves. Virology 370 1 (2008) 213-222
42. Erles K., Toomey C., Brooks H.W., and Brownlie J. Detection of a group 2 coronavirus in dogs with canine infectious respiratory disease. Virology 310 2 (2003) 216-223
43. Guy J.S., Breslin J.J., Breuhaus B., Vivrette S., and Smith L.G. Characterization of a coronavirus isolated from a diarrheic foal. J Clin Microbiol 38 12 (2000) 4523-4526
44. Hasoksuz M., Alekseev K., Vlasova A., Zhang X., Spiro D., Halpin R., et al. Biologic, antigenic, and full-length genomic characterization of a bovine-like coronavirus isolated from a giraffe. J Virol 81 10 (2007) 4981-4990
45. Jin L., Cebra C.K., Baker R.J., Mattson D.E., Cohen S.A., Alvarado D.E., and Rohrmann G.F. Analysis of the genome sequence of an alpaca coronavirus. Virology 365 1 (2007) 198-203
46. Xu H.F., Wang M., Zhang Z.B., Zou X.Z., Gao Y., Liu X.N., et al. [An epidemiologic investigation on infection with severe acute respiratory syndrome coronavirus in wild animals traders in Guangzhou]. Zhonghua Yu Fang Yi Xue Za Zhi 38 2 (2004) 81-83
47. Guan Y., Zheng B.J., He Y.Q., Liu X.L., Zhuang Z.X., Cheung C.L., et al. Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 302 5643 (2003) 276-278
48. Shi Z., and Hu Z. A review of studies on animal reservoirs of the SARS coronavirus. Virus Res (2007)
49. Kan B., Wang M., Jing H., Xu H., Jiang X., Yan M., et al. Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms. J Virol 79 18 (2005) 11892-11900
50. Hu W., Bai B., Hu Z., Chan Z., An X., Tang L., et al. Development and evaluation of a multitarget real-time Taqman reverse transcription-PCR assay for detection of the severe acute respiratory syndrome-associated coronavirus and surveillance for an apparently related coronavirus found in masked palm civets. J Clin Microbiol 43 5 (2005) 2041-2046
51. Song H.D., Tu C.C., Zhang G.W., Wang S.Y., Zheng K., Lei J.C., et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci USA 102 7 (2005) 2430-2435
52. Chinese S.A.R.S., Molecular Epidemiology, and Consortium. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science 333 (2004) 1666-1669
53. Li F., Li W., Farzan M., and Harrison S.C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309 5742 (2005) 1864-1868
54. Lau S.K., Woo P.C., Li K.S., Huang Y., Tsoi H.V., Wong B.H., et al. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc Natl Acad Sci USA 102 39 (2005) 14040-14045
55. Li W., Shi Z., Yu M., Ren W., Smith C., Epstein J.H., et al. Bats are natural reservoirs of SARS-like coronaviruses. Science 310 5748 (2005) 676-679
56. van Elden L.J., van Loon A.M., van Alphen F., Hendriksen K.A., Hoepelman A.I., van Kraaij M.G., et al. Frequent detection of human coronaviruses in clinical specimens from patients with respiratory tract infection by use of a novel real-time reverse-transcriptase polymerase chain reaction. J Infect Dis 189 4 (2004) 652-657
57. Chan K.H., Poon L.L., Cheng V.C., Guan Y., Hung I.F., Kong J., et al. Detection of SARS coronavirus in patients with suspected SARS. Emerg Infect Dis 10 2 (2004) 294-299
58. Seto W.H., Tsang D., Yung R.W., Ching T.Y., Ng T.K., Ho M., et al. Effectiveness of precautions against droplets and contact in prevention of nosocomial transmission of severe acute respiratory syndrome (SARS). Lancet 361 9368 (2003) 1519-1520
59. Rabenau H.F., Kampf G., Cinatl J., and Doerr H.W. Efficacy of various disinfectants against SARS coronavirus. J Hosp Infect 61 2 (2005) 107-111
60. Shen Z., Ning F., Zhou W., He X., Lin C., Chin D.P., et al. Superspreading SARS events, Beijing, 2003. Emerg Infect Dis 10 2 (2004) 256-260
61. Radun D., Niedrig M., Ammon A., and Stark K. SARS: retrospective cohort study among German guests of the Hotel 'M', Hong Kong. Euro Surveill 8 12 (2003) 228-230
62. Desenclos J.C., van der Werf S., Bonmarin I., Levy-Buhl D., Yazdanpanah Y., Hoen B., et al. Introduction of SARS in France, March-April, 2003. Emerg Infect Dis 10 2 (2004) 195-200
63. Hambre D., and Beem M. Virologic studies of acute respiratory disease in young adults. V. Coronavirus 229E infections during six years of surveillance. Am J Epidemiol 96 2 (1972) 94-106
64. Kaye H.S., and Dowdle W.R. Seroepidemiologic survey of coronavirus (strain 229E) infections in a population of children. Am J Epidemiol 101 3 (1975) 238-244
65. Kaye H.S., Marsh H.B., and Dowdle W.R. Seroepidemiologic survey of coronavirus (strain OC 43) related infections in a children's population. Am J Epidemiol 94 1 (1971) 43-49
66. Monto A.S., and Lim S.K. The Tecumseh study of respiratory illness. VI. Frequency of and relationship between outbreaks of coronavirus infection. J Infect Dis 129 3 (1974) 271-276
67. Vabret A., Mourez T., Dina J., and Freymuth F. Coronavirus humains. Virologie 9 (2005) 273-287
68. Esper F., Weibel C., Ferguson D., Landry M.L., and Kahn J.S. Evidence of a novel human coronavirus that is associated with respiratory tract disease in infants and young children. J Infect Dis 191 4 (2005) 492-498
69. Fouchier R.A., Hartwig N.G., Bestebroer T.M., Niemeyer B., de Jong J.C., Simon J.H., et al. A previously undescribed coronavirus associated with respiratory disease in humans. Proc Natl Acad Sci USA 101 16 (2004) 6212-6216
70. Arden K.E., Nissen M.D., Sloots T.P., and Mackay I.M. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J Med Virol 75 3 (2005) 455-462
71. Bastien N., Robinson J.L., Tse A., Lee B.E., Hart L., and Li Y. Human coronavirus NL-63 infections in children: a 1-year study. J Clin Microbiol 43 9 (2005) 4567-4573
72. Chiu S.S., Chan K.H., Chu K.W., Kwan S.W., Guan Y., Poon L.L., et al. Human coronavirus NL63 infection and other coronavirus infections in children hospitalized with acute respiratory disease in Hong Kong, China. Clin Infect Dis 40 12 (2005) 1721-1729
73. Suzuki A., Okamoto M., Ohmi A., Watanabe O., Miyabayashi S., and Nishimura H. Detection of human coronavirus-NL63 in children in Japan. Pediatr Infect Dis J 24 7 (2005) 645-646
74. Vabret A., Mourez T., Dina J., van der Hoek L., Gouarin S., Petitjean J., et al. Human coronavirus NL63, France. Emerg Infect Dis 11 8 (2005) 1225-1229
75. van der Hoek L., Sure K., Ihorst G., Stang A., Pyrc K., Jebbink M.F., et al. Croup is associated with the novel coronavirus NL63. PLoS Med 2 8 (2005) e240
76. Woo P.C., Wang M., Lau S.K., Xu H., Poon R.W., Guo R., et al. Comparative analysis of twelve genomes of three novel group 2c and group 2d coronaviruses reveals unique group and subgroup features. J Virol 81 4 (2007) 1574-1585
77. Sloots T.P., McErlean P., Speicher D.J., Arden K.E., Nissen M.D., and Mackay I.M. Evidence of human coronavirus HKU1 and human bocavirus in Australian children. J Clin Virol 35 1 (2006) 99-102
78. Vabret A., Dina J., Gouarin S., Petitjean J., Corbet S., and Freymuth F. Detection of the new human coronavirus HKU1: a report of 6 cases. Clin Infect Dis 42 5 (2006) 634-639
79. Woo P.C., Lau S.K., Tsoi H.W., Huang Y., Poon R.W., Chu C.M., et al. Clinical and molecular epidemiological features of coronavirus HKU1-associated community-acquired pneumonia. J Infect Dis 192 11 (2005) 1898-1907
80. Esposito S., Bosis S., Niesters H.G., Tremolati E., Begliatti E., Rognoni A., et al. Impact of human coronavirus infections in otherwise healthy children who attended an emergency department. J Med Virol 78 12 (2006) 1609-1615
81. Garbino J., Crespo S., Aubert J.D., Rochat T., Ninet B., Deffernez C., et al. A prospective hospital-based study of the clinical impact of non-severe acute respiratory syndrome (Non-SARS)-related human coronavirus infection. Clin Infect Dis 43 8 (2006) 1009-1015
82. Gerna G., Campanini G., Rovida F., Percivalle E., Sarasini A., Marchi A., et al. Genetic variability of human coronavirus OC43-, 229E-, and NL63-like strains and their association with lower respiratory tract infections of hospitalized infants and immunocompromised patients. J Med Virol 78 7 (2006) 938-949
83. Gerna G., Percivalle E., Sarasini A., Campanini G., Piralla A., Rovida F., et al. Human respiratory coronavirus HKU1 versus other coronavirus infections in Italian hospitalised patients. J Clin Virol 38 3 (2007) 244-250
84. Kuypers J., Martin E.T., Heugel J., Wright N., Morrow R., and Englund J.A. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics 119 1 (2007) e70-e76
85. Lau S.K., Woo P.C., Yip C.C., Tse H., Tsoi H.W., Cheng V.C., et al. Coronavirus HKU1 and other coronavirus infections in Hong Kong. J Clin Microbiol 44 6 (2006) 2063-2071
86. Vabret A., Dina J., Gouarin S., Petitjean J., Tripey V., Brouard J., et al. Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France. J Paediatr Child Health (2007)
87. Chany C., Moscovici O., Lebon P., and Rousset S. Association of coronavirus infection with neonatal necrotizing enterocolitis. Pediatrics 69 2 (1982) 209-214
88. Rousset S., Moscovici O., Lebon P., Barbet J.P., Helardot P., Mace B., et al. Intestinal lesions containing coronavirus-like particles in neonatal necrotizing enterocolitis: an ultrastructural analysis. Pediatrics 73 2 (1984) 218-224
89. Arbour N., Day R., Newcombe J., and Talbot P.J. Neuroinvasion by human respiratory coronaviruses. J Virol 74 19 (2000) 8913-8921
90. Arbour N., and Talbot P.J. Persistent infection of neural cell lines by human coronaviruses. Adv Exp Med Biol 440 (1998) 575-581
91. Bradburne A.F., Bynoe M.L., and Tyrrell D.A. Effects of a "new" human respiratory virus in volunteers. Br Med J 3 5568 (1967) 767-769
92. Fouchier R.A., Kuiken T., Schutten M., van Amerongen G., van Doonum G.J., van den Hoogen B.G., et al. Aetiology: Koch's postulates fulfilled for SARS virus. Nature 423 6937 (2003) 240
93. Lee N., Hui D., Wu A., Chan P., Cameron P., Joynt G.M., et al. A major outbreak of severe acute respiratory syndrome in Hong Kong. N Engl J Med 348 20 (2003) 1986-1994
94. Peiris J.S., Chu C.M., Cheng V.C., Chan K.S., Hung I.F., Poon L.L., et al. Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study. Lancet 361 9371 (2003) 1767-1772
95. Moes E., Vijgen L., Keyaerts E., Zlateva K., Li S., Maes P., et al. A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium. BMC Infect Dis 5 1 (2005) 6