Against the grain: safeguarding rice from rice blast disease

Trends in Biotechnology

Volumn 27, Issue 3, 2009, Pages 141-150

  Skamnioti, Pari ^a   Gurr, Sarah J ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AVIRULENCE; BIOLOGICAL CONTROLS; DIAGNOSTIC MARKERS; DISEASE MANAGEMENTS; GENETICALLY MODIFIED RICE; GLOBAL POPULATIONS; PLANT DEFENCES; RESISTANT CULTIVARS; RICE BLAST FUNGUS; RICE BLASTS;

GRAIN (AGRICULTURAL PRODUCT);

FUNGICIDE;

BIOLOGICAL PEST CONTROL; CULTIVAR; FUNGAL VIRULENCE; FUNGUS; GENETIC VARIABILITY; GENETICALLY MODIFIED FOOD; GRAIN; MAGNAPORTHE ORYZAE; NONHUMAN; PLANT DEFENSE; PLANT DISEASE; PRIORITY JOURNAL; REVIEW; RICE BLAST; RICE BLAST DISEASE;

FUNGICIDES, INDUSTRIAL; GENETIC ENHANCEMENT; MAGNAPORTHE; ORYZA SATIVA; PLANT DISEASES; PLANTS, GENETICALLY MODIFIED;

MAGNAPORTHE GRISEA; MAGNAPORTHE ORYZAE;

EID: 60349107504     PISSN: 01677799     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibtech.2008.12.002     Document Type: Review

References (101)

1. Sheehy J.E., et al. Harnessing photosynthesis in tomorrow's world: humans, crop production and poverty alleviation. In: Allen J.F., et al. (Ed). Energy from the Sun (2008), Springer 1243-1248
2. Oerke E.C., and Dehne H.W. Safeguarding production - losses in major crops and the role of crop protection. Crop Prot. 23 (2004) 275-285
3. Khush G.S. What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol. Biol. 59 (2005) 1-6
4. Zhang Q.F. Strategies for developing green super rice. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 16402-16409
5. Kato H. Rice blast disease. Pestic. Outlook 12 (2001) 23-25
6. Couch B.C., and Kohn L.M. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94 (2002) 683-693
7. Ou S.H., et al. Rice Diseases (1987), CAB International Mycological Institute
8. Couch B.C., et al. Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 170 (2005) 613-630
9. Talbot N.J. On the trail of a cereal killer: exploring the biology of Magnaporthe grisea. Annu. Rev. Microbiol. 57 (2003) 177-202
10. Ebbole D.J. Magnaporthe as a model for understanding host-pathogen interactions. Annu. Rev. Phytopathol. 45 (2007) 437-456
11. Dean R.A., et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434 (2005) 980-986
12. Sweigard J.A., et al. Identification, cloning, and characterization of Pwl2, a gene for host species-specificity in the rice blast fungus. Plant Cell 7 (1995) 1221-1233
13. Kang S.C., et al. The PWL host specificity gene family in the blast fungus Magnaporthe grisea. Mol. Plant Microbe Interact. 8 (1995) 939-948
14. Murakami J., et al. Analysis of host species specificity of Magnaporthe grisea toward wheat using a genetic cross between isolates from wheat and foxtail millet. Phytopathology 90 (2000) 1060-1067
15. Tosa Y., et al. Genetic analysis of host species specificity of Magnaporthe oryzae isolates from rice and wheat. Phytopathology 96 (2006) 480-484
16. Takabayashi N., et al. A gene-for-gene relationship underlying the species-specific parasitism of Avena/Triticum isolates of Magnaporthe grisea on wheat cultivars. Phytopathology 92 (2002) 1182-1188
17. Murakami J., et al. Analysis of host species specificity of Magnaporthe grisea toward foxtail millet using a genetic cross between isolates from wheat and foxtail millet. Phytopathology 93 (2003) 42-45
18. Chen Q.H., et al. Genetic analysis and molecular mapping of the avirulence gene PRE1, a gene for host-species specificity in the blast fungus Magnaporthe grisea. Genome 49 (2006) 873-881
19. Ballini E., et al. A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Mol. Plant Microbe Interact. 21 (2008) 859-868
20. Bonman J.M., et al. Breeding rice for resistance to pests. Annu. Rev. Phytopathol. 30 (1992) 507-528
21. Babujee L., and Gnanamanickam S.S. Molecular tools for characterization of rice blast pathogen, Magnaporthe grisea, population and molecular marker-assisted breeding for disease resistance. Curr. Sci. 78 (2000) 248-257
22. Farman M.L., et al. Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Mol. Plant Microbe Interact. 15 (2002) 6-16
23. Kang S., et al. Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol. Plant Microbe Interact. 14 (2001) 671-674
24. Orbach M.J., et al. A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta. Plant Cell 12 (2000) 2019-2032
25. Bohnert H.U., et al. A putative polyketide synthase peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice. Plant Cell 16 (2004) 2499-2513
26. Zhou E.X., et al. Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence. Fungal Genet. Biol. 44 (2007) 1024-1034
27. Khang C.H., et al. Genome organization and evolution of the AVR-Pita avirulence gene family in the Magnaporthe grisea species complex. Mol. Plant Microbe Interact. 21 (2008) 658-670
28. Peyyala R., and Farman M.L. Magnaporthe oryzae isolates causing gray leaf spot of perennial ryegrass possess a functional copy of AVR1-CO39 avirulence gene. Mol. Plant Pathol. 7 (2006) 157-165
29. Hittalmani S., et al. Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor. Appl. Genet. 100 (2000) 1121-1128
30. Fjellstrom R., et al. Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci. 44 (2004) 1790-1798
31. McClung A.M., et al. Registration of 'Jefferson' rice. Crop Sci. 37 (1997) 629-630
32. Zeigler R.S., et al. The relationship between lineage and virulence in Pyricularia grisea in the Philippines. Phytopathology 85 (1995) 443-451
33. Gnanamanickam S.S., et al. Lineage-exclusion resistance breeding: pyramiding of blast resistance genes for management of rice blast in India. Adv. Rice Blast Res. 15 (2000) 172-179
34. Dai L.Y., et al. Recent advances in cloning and characterization of disease resistance genes in rice. J. Integr. Plant Biol. 49 (2007) 112-119
35. Chen D.H., et al. Phenotypic characterization of the rice blast resistance gene Pi-2(t). Plant Dis. 80 (1996) 52-56
36. Qu S.H., et al. The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172 (2006) 1901-1914
37. Liu X.Q., et al. Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae. Mol. Genet. Genomics 278 (2007) 403-410
38. Jeung J.U., et al. A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice. Theor. Appl. Genet. 115 (2007) 1163-1177
39. Deng Y.W., et al. Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety. Theor. Appl. Genet. 113 (2006) 705-713
40. Zhu Y.Y., et al. Genetic diversity and disease control in rice. Nature 406 (2000) 718-722
41. Ishizaki K., et al. Breeding of blast resistant isogenic lines in rice variety 'Koshihikari' and evaluation of their characters. Breed. Sci. 55 (2005) 371-377
42. Takeuchi Y., et al. Development of isogenic lines of rice cultivar Koshihikari with early and late heading by marker-assisted selection. Breed. Sci. 56 (2006) 405-413
43. Koizumi S., et al. Durable control of rice blast disease with multilines. In: Kawasaki S. (Ed). Rice Blast: Interaction with Rice and Control (2004), Kluwer 191-199
44. Chen Q.H., et al. Genetic diversity of Magnaporthe grisea in China as revealed by DNA fingerprint haplotypes and pathotypes. J. Phytopathol. 154 (2006) 361-369
45. Levy M., et al. DNA fingerprinting with a dispersed repeated sequence resolves pathotype diversity in the rice blast fungus. Plant Cell 3 (1991) 95-102
46. Consolo V.F., et al. DNA fingerprint and pathotype diversity of Pyricularia oryzae populations from Argentina. Australas. Plant Pathol. 37 (2008) 357-364
47. Sirithunya P., et al. Assessment of genetic diversity in Thai isolates of Pyricularia grisea by random amplification of polymorphic DNA. J. Phytopathol. 156 (2008) 196-204
48. Chadha S., and Gopalakrishna T. Genetic diversity of Indian isolates of rice blast pathogen (Magnaporthe grisea) using molecular markers. Curr. Sci. 88 (2005) 1466-1469
49. Sere Y., et al. Genetic diversity of the blast fungus, Magnaporthe grisea (Hebert) Barr, in Burkina Faso. Afr. J. Biotechnol. 6 (2007) 2568-2577
50. George M.L.C., et al. Rapid population analysis of Magnaporthe grisea by using rep-PCR and endogenous repetitive DNA sequences. Phytopathology 88 (1998) 223-229
51. Chadha S., and Gopalakrishna T. Retrotransposon-microsatellite amplified polymorphism (REMAP) markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea). Genome 48 (2005) 943-945
52. Martin R.R., et al. Impacts of molecular diagnostic technologies on plant disease management. Annu. Rev. Phytopathol. 38 (2000) 207-239
53. Atkins S.D., and Clark I.M. Fungal molecular diagnostics: a mini review. J. Appl. Genet. 45 (2004) 3-15
54. Schaad N.W., et al. Advances in molecular-based diagnostics in meeting crop biosecurity and phytosanitary issues. Annu. Rev. Phytopathol. 41 (2003) 305-324
55. Ashizawa T., et al. Effects of preinoculation with an avirulent isolate of Pyricularia grisea on infection and development of leaf blast lesions caused by virulent isolates on near-isogenic lines of Sasanishiki rice. J. Gen. Plant Pathol. 71 (2005) 345-350
56. Manandhar H.K., et al. Suppression of rice blast by preinoculation with avirulent Pyricularia oryzae and the nonrice pathogen Bipolaris sorokiniana. Phytopathology 88 (1998) 735-739
57. Tsukamoto H., et al. Biological control of rice leaf blast with Exserohilum monoceras, a pathogen of Echinochloa species. Ann. Phytopathological Soc. Jpn. 65 (1999) 543-548
58. Ohtaka N., et al. Suppression of rice blast using freeze-killed mycelia of biocontrol fungal candidate MKP5111B. J. Gen. Plant Pathol. 74 (2008) 101-108
59. Karthikeyan V., and Gnanamanickam S. Biological control of Setaria blast (Magnaporthe grisea) with bacterial strains. Crop Prot. 27 (2008) 263-267
60. Tendulkar S., et al. Isolation, purification and characterization of an antifungal molecule produced by Bacillus licheniformis BC98, and its effect on phytopathogen Magnaporthe grisea. Appl. Microbiol. 1 (2007) 2331-2339
61. Prabavathy V.R., et al. Control of blast and sheath blight diseases of rice using antifungal metabolites produced by Streptomyces sp PM5. Biol. Control 39 (2006) 313-319
62. Iwata M. Probenazole - a plant defence activator. Pestic. Outlook 12 (2001) 28-31
63. Kurahashi Y. Melanin biosynthesis inhibitors (MBIs) for control of rice blast. Pestic. Outlook 12 (2001) 32-35
64. Uesugi Y. Fungal choline biosynthesis - a target for controlling rice blast. Pestic. Outlook 12 (2001) 26-27
65. Iwai T., et al. Probenazole-induced accumulation of salicylic acid confers resistance to Magnaporthe grisea in adult rice plants. Plant Cell Physiol. 48 (2007) 915-924
66. Sawada H., et al. Monitoring and characterization of Magnaporthe grisea isolates with decreased sensitivity to scytalone dehydratase inhibitors. Pest Manag. Sci. 60 (2004) 777-785
67. Suzuki F., and Arai M. Genetic analysis of Pyricularia grisea population by rep-PCR during development of resistance to scytalone dehydratase inhibitors of melanin biosynthesis. Plant Dis. 91 (2007) 176-184
68. Avila-Adame C., and Koller W. Characterization of spontaneous mutants of Magnaporthe grisea expressing stable resistance to the QoI-inhibiting fungicide azoxystrobin. Curr. Genet. 42 (2003) 332-338
69. Araki Y., et al. Monitoring of the sensitivity of Magnaporthe grisea to metominostrobin 2001-2003: no emergence of resistant strains and no mutations at codon 143 or 129 of the cytochrome b gene. J. Pestic. Sci. 30 (2005) 203-208
70. Kim Y.-S., et al. Field resistance to strobilurin (QoI) fungicides in Pyricularia grisea caused by mutations in the mitochondrial cytochrome b gene. Phytopathology 93 (2003) 891-900
71. Oh H.S., and Lee Y.H. A target-site-specific screening system for antifungal compounds on appressorium formation in Magnaporthe grisea. Phytopathology 90 (2000) 1162-1168
72. Kim J.-C., et al. Efficient target-site assay of chemicals for melanin biosynthesis inhibition of Magnaporthe grisea. Plant Pathol. J. 16 (2000) 125-129
73. Ribot C., et al. Susceptibility of rice to the blast fungus, Magnaporthe grisea. J. Plant Physiol. 165 (2008) 114-124
74. Bryan G.T., et al. tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12 (2000) 2033-2045
75. Chen X.W., et al. A B-lectin receptor kinase gene conferring rice blast resistance. Plant J. 46 (2006) 794-804
76. Bajaj S., and Mohanty A. Recent advances in rice biotechnology-towards genetically superior transgenic rice. Plant Biotechnol. J. 3 (2005) 275-307
77. Kathuria H., et al. Advances in transgenic rice biotechnology. Crit. Rev. Plant Sci. 26 (2007) 65-103
78. Yara A., et al. Disease resistance against Magnaporthe grisea is enhanced in transgenic rice with suppression of omega-3 fatty acid desaturases. Plant Cell Physiol. 48 (2007) 1263-1274
79. Mei C.S., et al. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. Mol. Plant Microbe Interact. 19 (2006) 1127-1137
80. Shimono M., et al. Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. Plant Cell 19 (2007) 2064-2076
81. Takakura Y., et al. Expression of a bacterial flagellin gene triggers plant immune responses and confers disease resistance in transgenic rice plants. Mol. Plant Pathol. 9 (2008) 525-529
82. Shao M., et al. Expression of a harpin-encoding gene in rice confers durable nonspecific resistance to Magnaporthe grisea. Plant Biotechnol. J. 6 (2008) 73-81
83. Coca M., et al. Enhanced resistance to the rice blast fungus Magnaporthe grisea conferred by expression of a cecropin A gene in transgenic rice. Planta 223 (2006) 392-406
84. Prasad B.D., et al. Transgenic indica rice expressing Mirabilis jalapa antimicrobial protein (Mj-AMP2) shows enhanced resistance to the rice blast fungus Magnaporthe oryzae. Plant Sci. 175 (2008) 364-371
85. Kawata M. Broad-spectrum disease resistance in transgenic rice. In: Toriyama K., et al. (Ed). Rice is Life: Scientific Perspectives for the 21st Century (2005), International Rice Research Institute 97-99
86. Quilis J., et al. A potato carboxypeptidase inhibitor gene provides pathogen resistance in transgenic rice. Plant Biotechnol. J. 5 (2007) 537-553
87. Sasaki K., et al. Characterization of two rice peroxidase promoters that respond to blast fungus-infection. Mol. Genet. Genomics 278 (2007) 709-722
88. Gurr S.J., and Rushton P.J. Engineering plants with increased disease resistance: how are we going to express it?. Trends Biotechnol. 23 (2005) 283-290
89. Howard R.J., and Valent B. Breaking and entering: host penetration by the fungal rice blast pathogen Magnaporthe grisea. Annu. Rev. Microbiol. 50 (1996) 491-512
90. Wang Z.X., et al. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19 (1999) 55-64
91. Zhou B., et al. The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol. Plant Microbe Interact. 19 (2006) 1216-1228
92. Berruyer R., et al. Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1. Theor. Appl. Genet. 107 (2003) 1139-1147
93. Liu X.Q., et al. The in silico map-based cloning of Pi36, a rice coiled-coil-nucleotide-binding site-leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics 176 (2007) 2541-2549
94. Lin F., et al. The blast resistance gene Pi37 encodes a nucleotide binding site-leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics 177 (2007) 1871-1880
95. Chauhan R.S., et al. Genetic and physical mapping of a rice blast resistance locus, Pi-CO39(t), that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea. Mol. Genet. Genomics 267 (2002) 603-612
96. h gene of rice, which confers resistance to Magnaporthe grisea. Mol. Genet. Genomics 274 (2005) 569-578
97. Fukuoka, S. et al. (2007) National Institute of Agrobiological Sciences, Japan. Rice blast disease gene pi21, resistance gene pi21 and utilisation thereof, Patent no. WO/2007/000880. PCT JP2006
98. Yang S.H., et al. Genetic variation of NBS-LRR class resistance genes in rice lines. Theor. Appl. Genet. 116 (2008) 165-177
99. Jia Y.L., et al. Rice Pi-ta gene confers resistance to the major pathotypes of the rice blast fungus in the United States. Phytopathology 94 (2004) 296-301
100. Collemare J., et al. Magnaporthe grisea avirulence gene ACE1 belongs to an infection-specific gene cluster involved in secondary metabolism. New Phytol. 179 (2008) 196-208
101. Farman M.L., and Leong S.A. Chromosome walking to the AVR1-CO39 avirulence gene of Magnaporthe grisea: discrepancy between the physical and genetic maps. Genetics 150 (1998) 1049-1058