Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes

Crop Science

Volumn 44, Issue 5, 2004, Pages 1790-1798

  Fjellstrom, Robert ^a   Conaway Bormans, Concetta A ^b   McClung, Anna M ^a   Marchetti, Marco A ^a   Shank, A Robert ^a   Park, William D ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGI; MAGNAPORTHE GRISEA; ORYZA SATIVA; PYRICULARIA; PYRICULARIA GRISEA; TRANSPOSONS;

EID: 4444234887     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2004.1790     Document Type: Article

References (47)

1. Ayres, N.M., A.M. McClung, P.D. Larkin, H.F.J. Bligh, C.A. Jones, and W.D. Park. 1997. Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm. Theor. Appl. Genet. 94:773-781.
2. Bormans, C.A. 2002. Development of genetic markers for blast resistance genes in rice (Oryza sativa L.) for use in marker aided selection. Ph.D. diss. (AAT 3060771). Texas A&M University, College Station.
3. Bollich, C.N., B.D. Webb, M.A. Marchetti, and J.E. Scott. 1991. Registration of 'Maybelle' rice. Crop Sci. 31:1090.
4. Bollich, C.N., B.D. Webb, J.E. Scott, and J.G. Atkins. 1975. Registration of 'Lebonnet' rice. Crop Sci. 15:886.
5. Bryan, G.T., K. Wu, L. Farrall, Y. Jia, H.P. Hershey, S.A. McAdams, R. Tarchini, G. Donaldson, K. Faulk, and B. Valent. 2000. A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12:2033-2045.
6. Chen, M., G. Presting, W.B. Barbazuk, J.L. Goicoechea, B. Blackmon, G. Fang, H. Kim, D. Frisch, Y. Yu, S. Sun, S. Higingbottom, J. Phimphilai, D. Phimphilai, S. Thurmond, B. Gaudette, P. Li, J. Liu, J. Hatfield, D. Main, K. Farrar, C. Henderson, L. Barnett, R. Costa, B. Williams, S. Walser, M. Atkins, C. Hall, M.A. Budiman, J.P. Tomkins, M. Luo, I. Bancroft, J. Salse, F. Regad, T. Mohapatra, N.K. Singh, A.K. Tyagi, C. Soderlund, R.A. Dean, and R.A. Wing. 2002. An integrated physical and genetic map of the rice genome. Plant Cell 14:537-545.
7. Collins, N., J. Drake, M. Ayliffe, Q. Sun, J. Ellis, S. Hulbert, and T. Pryor. 1999. Molecular characterization of the maize RpI-D rust resistance haplotype and its mutants. Plant Cell 11:1365-1376.
8. Conaway, C., S. Cartinhour, N. Ayres, A.M. McClung, X.H. Lai, M.A. Marchetti, and W.D. Park. 1998. PCR based markers linked to blast resistance genes in rice. p. 77. In Proceedings of the 27th Rice Technical Working Group Meeting. The Texas Agricultural Experiment Station, College Station, TX.
9. Correll, J.C., T.L. Harp, J.C. Guerber, and F.N. Lee. 2000. Differential changes in host specificity among MRG586 DNA fingerprint groups of Pyricularia grisea. p. 234-242. In D. Tharreau et al. (ed.) Advances in rice blast research. Kluwer Academic Publishers, Dordrecht, the Netherlands.
10. Fjellstrom, R., A. McClung, A.R. Shank, M.A. Marchetti, C. Bormans, and W.D. Park. 2002. Progress on development of microsatellite markers associated with rice blast resistance genes. p. 43-44. In Proceedings of the 29th Rice Technical Working Group Meeting. The Texas Agricultural Experiment Station, College Station, TX.
11. Gravois, K.A., K.A.K. Moldenhauer, F.N. Lee, R.J. Norman, R.S. Helms, and J.L. Bernhardt. 1995. Registration of 'Kaybonnet' rice. Crop Sci. 35:586-587.
12. Harushima, Y., M. Yano, A. Shomura, M. Sato, T. Shimano, Y. Kuboki, T. Yamamoto, S.Y. Lin, B.A. Antonio, A. Parco, H. Kajiya, N. Huang, K. Yamamoto, Y. Nagamura, N. Kurata, G.S. Khush, and T. Sasaki. 1998. A high-density rice genetic linkage map with 2275 markers using a single F2 population. Genetics 148:479-494.
13. Hittalmani, S., A. Parco, T.V. Mew, R.S. Ziegler, and N. Huang. 2000. Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor. Appl. Genet. 100:1121-1128.
14. Inukai, T., R.J. Nelson, R.S. Ziegler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure, and T. Kinoshita. 1994. Allelism of blast resistance genes in near-isogenic lines of rice. Phytopathology 84: 1278-1283.
15. Jia, Y., Z. Wang, and P. Singh. 2002. Development of dominant rice blast Pi-ta resistance gene markers. Crop Sci. 42:2145-2149.
16. Jia, Y., Z. Wang, R.G. Fjellstrom, K.A.K. Moldenhauer, M.A. Azam, J. Correll, F.N. Lee, Y. Xia, and J.N. Rutger. 2004. Rice Pi-ta gene confers resistance to the major pathotypes of the rice blast fungus in the United States. Phytopathology 94:296-301.
17. Kiyosawa, S. 1969. Inheritance of resistance of rice varieties to a Philippine fungus strain of Pyricularia oryzae. Jpn. J. Breed. 19: 61-73.
18. Kiyosawa, S. 1972. Genetics of blast resistance, p. 203-225. In Rice breeding. IRRI, Manila, Phillipines.
19. Kiyosawa, S. 1974. Inheritance of blast resistance of a U. S. variety, Dawn. Jpn. J. Breed. 24:117-124.
20. Kiyosawa, S. 1978. Identification of blast-resistance genes in some rice varieties. Jpn. J. Breed. 28:287-296.
21. Lee, F.N. 1994. Rice breeding programs, blast epidemics and blast management in the United States. p. 489-500. In R.S. Ziegler et al. (ed.) Rice blast disease. C.A.B. International, Wallingford, UK.
22. Manly, K.F., R.H. Cudmore, Jr., and J.M. Meer. 2001. Map Manager QTX, cross-platform software for genetic mapping. Mamm. Genome 12:930-932.
23. Marchetti, M.A. 1983. Dilatory resistance to rice blast in USA rice. Phytopathology 73:645-649.
24. Marchetti, M.A., and X.-H. Lai. 2000. Development of blast differential near-isogenic lines for the southern U.S. p. 70-71. In Proceedings of the 28th Rice Technical Working Group Meeting. The Texas Agricultural Experiment Station, College Station, TX.
25. Marchetti, M.A., X. Lai, and C.N. Bollich. 1987. Inheritance of resistance to Pyricularia oryzae in rice cultivars grown in the United States. Phytopathology 77:799-804.
26. McClung, A.M. 2002. Techniques for development of new cultivars. p. 177-202. In C.W. Smith and R.H. Dilday (ed.) Rice: Origin, history, technology and production. John Wiley & Sons, Hoboken, NJ.
27. McClung, A.M., C.J. Bergman, R.G. Fjellstrom, and M.A. Marchetti. 2004a. Registration of 'Bolivar' rice. Crop Sci. 44:353-355.
28. McClung, A.M., R.G. Fjellstrom, C.J. Bergman, C.A. Bormans, W.D. Park, and M.A. Marchetti. 2004b. Registration of 'Saber' rice. Crop Sci. 44:693-694.
29. McClung, A.M., R.G. Fjellstrom, C. Bormans, C.J. Bergman, and W.D. Park. 2002. Integration of molecular markers into a cultivar development program. p. 48. In Proceedings of the 29th Rice Technical Working Group Meeting. The Texas Agricultural Experiment Station, College Station, TX.
30. McClung, A.M., M.A. Marchetti, B.D. Webb, and C.N. Bollich. 1997. Registration of 'Jefferson' rice. Crop Sci. 37:629-630.
31. McClung, A.M., M.A. Marchetti, B.D. Webb, and C.N. Bollich. 1998. Registration of 'Madison' rice. Crop Sci. 39:1256.
32. McClung, A.M., A.R. Shank, M.A. Marchetti, Y. Jia, C.A. Bormans, W.D. Park, and R.G. Fjellstrom. 2003. Pedigree and DNA marker analysis of blast resistance genes in US rice germplasm. p. 153. In Proc. Plant and Animal Genome Conference XI, San Diego, CA.11-15 Jan. 2003 (http://www.intl-pag.org/11/ abstracts/; verified 23 Apr. 2004).
33. McCouch, S.R., R.J. Nelson, J. Tohme, and R.S. Ziegler. 1994. Mapping of blast resistance genes in rice. p. 167-186. In R.S. Ziegler et al. (ed.) Rice blast disease. CAB International, Wallingford, UK.
34. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing, Q. Zhang, I. Kono, M. Yano, R. Fjellstrom, G. DeClerck, D. Schneider, S. Cartinhour, D. Ware, and L. Stein. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9:199-207.
35. Moldenhauer, K.A.K., A.O. Bastawisi, and F.N. Lee. 1992. Inheritance of resistance in rice to races IB-49 and IC-17 of Pyricularia grisea rice blast. Crop Sci. 32:584-588.
36. Moldenhauer, K.A.K., K.A. Gravois, F.N. Lee, R.J. Norman, J.L. Bernhardt, B.R. Wells, R.H. Dilday, M.M. Blocker, P.C. Rohman, and T.A. McMinn. 1998. Registration of 'Drew' rice. Crop Sci. 38:896-897.
37. Monna, L., A. Miyao, H.S. Zhong, M. Yano, M. Iwamoto, Y. Umehara, N. Kurata, H. Haysaka, and T. Sasaki. 1997. Saturation mapping with subclones of YACs: DNA marker production targeting the rice blast disease resistance gene, Pi-b. Theor. Appl. Genet. 94:170-176.
38. 2 using a highly representative rice BAC library. Mol. Gen. Genet. 254: 611-620.
39. Ou, S.H. 1985. Rice diseases. 2nd ed. Commonw. Mycol. Inst., Kew, UK.
40. 2 and Pi-ta and a consideration of their origin. Mol. Plant Microbe Interact. 10:517-524.
41. Tabien, R.E., Z. Li, A.H. Paterson, M.A. Marchetti, J.W. Stansel, and S.R.M. Pinson. 2000. Mapping of four major rice blast resistance genes from 'Lemont' and 'Teqing' and evaluation of their combinatorial effect for field resistance. Theor. Appl. Genet. 101:1215-1225.
42. Tabien, R.E., Z. Li, A.H. Paterson, M.A. Marchetti, J.W. Stansel, and S.R.M. Pinson. 2002. Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties. Theor. Appl. Genet. 105:313-324.
43. Temnykh, S., W.D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii, and S.R. McCouch. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100:697-712.
44. Wang, G.-L., D.J. Mackill, M. Bonman, S.R. McCouch, M.C. Champoux, and R.J. Nelson. 1994. RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136:1421-1434.
45. Wang, Z.-X., M. Yano, U. Yamanouchi, M. Iwamoto, L. Monna, H. Hayasaka, Y. Katayose, and T. Sasaki. 1999. The Pib gene for disease resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19:55-66.
46. Williams, C.E., and P.C. Ronald. 1994. PCR template-DNA isolated quickly from monocot and dicot leaves without tissue homogenization. Nucleic Acids Res. 22:1917-1918.
47. Xia, J.Q., J.C. Correll, F.N. Lee, M.A. Marchetti, and D.D. Rhoads. 1993. DNA fingerprinting to examine microgeographic variation in the Magnaporthe grisea (Pyricularia grisea) population in two rice fields in Arkansas. Phytopathology 83:1029-1035.