-
1
-
-
16544393499
-
Host-parasite coevolutionary conflict between Arabidopsis and Downy Mildew
-
Allen RL, Bittner-Eddy P, Grenville-Briggs L, Meitz J, Rehmany AP, Rose LE, Beynon JL (2004) Host-parasite coevolutionary conflict between Arabidopsis and Downy Mildew. Science 306:1957-1960
-
(2004)
Science
, vol.306
, pp. 1957-1960
-
-
Allen, R.L.1
Bittner-Eddy, P.2
Grenville-Briggs, L.3
Meitz, J.4
Rehmany, A.P.5
Rose, L.E.6
Beynon, J.L.7
-
4
-
-
17744370947
-
A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta
-
Bryan GT, Wu KS, Farrall L, Jia Y, Hershey HP, Mcadams SA, Faulk KN, Donaldson K, Tarchini T, Valent B (2000) A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant cell 12:2033-2046
-
(2000)
Plant Cell
, vol.12
, pp. 2033-2046
-
-
Bryan, G.T.1
Wu, K.S.2
Farrall, L.3
Jia, Y.4
Hershey, H.P.5
McAdams, S.A.6
Faulk, K.N.7
Donaldson, K.8
Tarchini, T.9
Valent, B.10
-
5
-
-
0035058717
-
Rice genomics: Present and future
-
Delseny M, Salses J, Cooke R, Sallaud C, Regad F et al (2001) Rice genomics: present and future. Plant Physiol Biochem 39:323-334
-
(2001)
Plant Physiol Biochem
, vol.39
, pp. 323-334
-
-
Delseny, M.1
Salses, J.2
Cooke, R.3
Sallaud, C.4
Regad, F.5
-
6
-
-
33846916255
-
Contrasting patterns of evolution between allelic groups at a single locus in Arabidopsis
-
Ding J, Cheng H, Jin X, Araki H, Yang Y, Tian D (2007a) Contrasting patterns of evolution between allelic groups at a single locus in Arabidopsis. Genetica 129:235-242
-
(2007)
Genetica
, vol.129
, pp. 235-242
-
-
Ding, J.1
Cheng, H.2
Jin, X.3
Araki, H.4
Yang, Y.5
Tian, D.6
-
7
-
-
34248666719
-
Unique pattern of R-gene variation within populations in Arabidopsis
-
Ding J, Zhang W, Jing Z, Chen JQ, Tian D (2007b) Unique pattern of R-gene variation within populations in Arabidopsis. Mol Genet Genomics 277:619-629
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 619-629
-
-
Ding, J.1
Zhang, W.2
Jing, Z.3
Chen, J.Q.4
Tian, D.5
-
8
-
-
1542542334
-
The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells
-
Dodds PN, Lawrence GJ, Catanzariti A, Ayliffe MA, Ellis JG (2004) The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells. Plant Cell 16:755-768
-
(2004)
Plant Cell
, vol.16
, pp. 755-768
-
-
Dodds, P.N.1
Lawrence, G.J.2
Catanzariti, A.3
Ayliffe, M.A.4
Ellis, J.G.5
-
9
-
-
0033946441
-
Structure function and evolution of plant disease resistance genes
-
Elli J, Dodds P, Pryor T (2000) Structure function and evolution of plant disease resistance genes. Curr Opin Plant Biol 3:278-284
-
(2000)
Curr Opin Plant Biol
, vol.3
, pp. 278-284
-
-
Elli, J.1
Dodds, P.2
Pryor, T.3
-
10
-
-
0033101488
-
Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity
-
Ellis JG, Lawrence GJ, Luck JE, Dodds PN (1999) Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity. Plant Cell 11:495-506
-
(1999)
Plant Cell
, vol.11
, pp. 495-506
-
-
Ellis, J.G.1
Lawrence, G.J.2
Luck, J.E.3
Dodds, P.N.4
-
11
-
-
17444386263
-
Genetic structure and diversity in Oryza sativa L
-
Garris A, Tai TH, Coburn J, Kresovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169:1631-1638
-
(2005)
Genetics
, vol.169
, pp. 1631-1638
-
-
Garris, A.1
Tai, T.H.2
Coburn, J.3
Kresovich, S.4
McCouch, S.5
-
13
-
-
3242714766
-
Pattern of polymorphism after strong artificial selection in a domestication event
-
Innan H, Kim Y (2004) Pattern of polymorphism after strong artificial selection in a domestication event. Proc Natl Acad Sci USA 101:10667-10672
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 10667-10672
-
-
Innan, H.1
Kim, Y.2
-
14
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-800
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
15
-
-
0242371119
-
Natural variation at the Pi-ta rice blast resistance locus
-
Jia Y, Bryan GT, Farrall L, Valent B (2003) Natural variation at the Pi-ta rice blast resistance locus. Phytopathology 93:1452-1459
-
(2003)
Phytopathology
, vol.93
, pp. 1452-1459
-
-
Jia, Y.1
Bryan, G.T.2
Farrall, L.3
Valent, B.4
-
16
-
-
34250820520
-
Pattern of LRR nucleotide variation in plant resistance genes
-
Jiang H, Wang C, Ping L, Tian D, Yang S (2007) Pattern of LRR nucleotide variation in plant resistance genes. Plant Sci 173:253-261
-
(2007)
Plant Sci
, vol.173
, pp. 253-261
-
-
Jiang, H.1
Wang, C.2
Ping, L.3
Tian, D.4
Yang, S.5
-
17
-
-
77956742948
-
The role of leucine-rich repeat proteins in plant defenses
-
Jones DA, Jones JDG (1997) The role of leucine-rich repeat proteins in plant defenses. Adv Bot Res 24:89-167
-
(1997)
Adv Bot Res
, vol.24
, pp. 89-167
-
-
Jones, D.A.1
Jones, J.D.G.2
-
18
-
-
14744270315
-
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce
-
Kuang H, Woo SS, Meyers BC, Nevo E, Michelmor RW (2004) Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell 16:2870-2894
-
(2004)
Plant Cell
, vol.16
, pp. 2870-2894
-
-
Kuang, H.1
Woo, S.S.2
Meyers, B.C.3
Nevo, E.4
Michelmor, R.W.5
-
19
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
20
-
-
0037384421
-
Plant disease resistance genes: Recent insights and potential applications
-
McDowell JM, Woffenden BJ (2003) Plant disease resistance genes: recent insights and potential applications. Trends Biotechnol 21:178-182
-
(2003)
Trends Biotechnol
, vol.21
, pp. 178-182
-
-
McDowell, J.M.1
Woffenden, B.J.2
-
21
-
-
33745434299
-
Sequencing multiple and diverse rice varieties connecting whole-genome variation with phenotypes
-
McNally KL, Bruskiewich R, Mackill D, Buell CR, Leach JE, Leung H (2006) Sequencing multiple and diverse rice varieties connecting whole-genome variation with phenotypes. Plant Physiol 141:26-31
-
(2006)
Plant Physiol
, vol.141
, pp. 26-31
-
-
McNally, K.L.1
Bruskiewich, R.2
MacKill, D.3
Buell, C.R.4
Leach, J.E.5
Leung, H.6
-
22
-
-
0037390933
-
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
-
Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809-834
-
(2003)
Plant Cell
, vol.15
, pp. 809-834
-
-
Meyers, B.C.1
Kozik, A.2
Griego, A.3
Kuang, H.4
Michelmore, R.W.5
-
23
-
-
0032415864
-
Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process
-
Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
-
(1998)
Genome Res
, vol.8
, pp. 1113-1130
-
-
Michelmore, R.W.1
Meyers, B.C.2
-
24
-
-
0016220238
-
The hitch-hiking effect of a favorable gene
-
Maynard-Smith J, Haigh J (1974) The hitch-hiking effect of a favorable gene. Genet Res 23:23-35
-
(1974)
Genet Res
, vol.23
, pp. 23-35
-
-
Maynard-Smith, J.1
Haigh, J.2
-
25
-
-
0036928794
-
Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP Markers
-
Nasu S, Suzuki J, Ohta R, Hasegawa K, Yui R, Kitazawa N, Monna L, Minobe Y (2002) Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP Markers. DNA Res 9:163-171
-
(2002)
DNA Res
, vol.9
, pp. 163-171
-
-
Nasu, S.1
Suzuki, J.2
Ohta, R.3
Hasegawa, K.4
Yui, R.5
Kitazawa, N.6
Monna, L.7
Minobe, Y.8
-
26
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
27
-
-
0033230488
-
Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis
-
Noël L, Moores TL, Biezen EA, Parniske M, Daniels MJ, Parker JE, Jones JDG (1999) Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis. Plant Cell 11:2099-2111
-
(1999)
Plant Cell
, vol.11
, pp. 2099-2111
-
-
Noël, L.1
Moores, T.L.2
Biezen, E.A.3
Parniske, M.4
Daniels, M.J.5
Parker, J.E.6
Jones, J.D.G.7
-
28
-
-
0031469143
-
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato
-
Parniske M, Hammond-Kosack KE, Golstein C, Thomas CM, Jones DA, Harrison K, Wulff BB, Jones JD (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91:821-832
-
(1997)
Cell
, vol.91
, pp. 821-832
-
-
Parniske, M.1
Hammond-Kosack, K.E.2
Golstein, C.3
Thomas, C.M.4
Jones, D.A.5
Harrison, K.6
Wulff, B.B.7
Jones, J.D.8
-
29
-
-
0036269818
-
Strategies using genes for non-durable resistance
-
Pink DAC (2002) Strategies using genes for non-durable resistance. Euphytica 124:227-236
-
(2002)
Euphytica
, vol.124
, pp. 227-236
-
-
Pink, D.A.C.1
-
30
-
-
33645316491
-
Nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice
-
Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL (2006) Nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172:1901-1194
-
(2006)
Genetics
, vol.172
, pp. 1901-1194
-
-
Qu, S.1
Liu, G.2
Zhou, B.3
Bellizzi, M.4
Zeng, L.5
Dai, L.6
Han, B.7
Wang, G.L.8
-
31
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sánchez-delBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-Delbarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
32
-
-
33644765887
-
Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana
-
Shen J, Araki H, Chen L, Chen JQ, Tian D (2006) Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana. Genetics 172:1243-1250
-
(2006)
Genetics
, vol.172
, pp. 1243-1250
-
-
Shen, J.1
Araki, H.2
Chen, L.3
Chen, J.Q.4
Tian, D.5
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0032076826
-
Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution
-
Wang GL, Ruan DL, Song WY, Sideris S, Chen L, Pi LY, Zhang S, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald PC (1998) Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell 10:756-779
-
(1998)
Plant Cell
, vol.10
, pp. 756-779
-
-
Wang, G.L.1
Ruan, D.L.2
Song, W.Y.3
Sideris, S.4
Chen, L.5
Pi, L.Y.6
Zhang, S.7
Zhang, Z.8
Fauquet, C.9
Gaut, B.S.10
Whalen, M.C.11
Ronald, P.C.12
-
35
-
-
14244250895
-
Duplication and DNA segmental loss in the rice genome: Implications for diploidization
-
Wang X, Shi X, Hao B, Ge S, Luo J (2005) Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol 165:937-946
-
(2005)
New Phytol
, vol.165
, pp. 937-946
-
-
Wang, X.1
Shi, X.2
Hao, B.3
Ge, S.4
Luo, J.5
-
36
-
-
0033166093
-
The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
-
Wang ZX, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T (1999) The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19:55-64
-
(1999)
Plant J
, vol.19
, pp. 55-64
-
-
Wang, Z.X.1
Yano, M.2
Yamanouchi, U.3
Iwamoto, M.4
Monna, L.5
Hayasaka, H.6
Katayose, Y.7
Sasaki, T.8
-
37
-
-
18444363928
-
Reduced genetic variation occurs among genes of the highly clonal plant pathogen Xanthomonas axonopodis pv. vesicatoria, including the effector gene avrBs2
-
Wichmann G, Ritchie D, Kousik CS, Bergelson J (2005) Reduced genetic variation occurs among genes of the highly clonal plant pathogen Xanthomonas axonopodis pv. vesicatoria, including the effector gene avrBs2. Appl Environ Microbiol. 71:2418-2432
-
(2005)
Appl Environ Microbiol.
, vol.71
, pp. 2418-2432
-
-
Wichmann, G.1
Ritchie, D.2
Kousik, C.S.3
Bergelson, J.4
-
38
-
-
33748532213
-
Genome-wide investigation on the genetic variations of rice disease resistance genes
-
Yang S, Feng Z, Zhang X, Jiang K, Jin X, Hang Y, Chen JQ, Tian D (2006) Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Mol Biol 62:181-193
-
(2006)
Plant Mol Biol
, vol.62
, pp. 181-193
-
-
Yang, S.1
Feng, Z.2
Zhang, X.3
Jiang, K.4
Jin, X.5
Hang, Y.6
Chen, J.Q.7
Tian, D.8
-
39
-
-
34247097007
-
A molecular isolation mechanism associated with high intra-specific diversity in rice
-
Yang S, Jiang K, Araki H, Ding J, Yang YH, Tian D (2007) A molecular isolation mechanism associated with high intra-specific diversity in rice. Gene 394:87-95
-
(2007)
Gene
, vol.394
, pp. 87-95
-
-
Yang, S.1
Jiang, K.2
Araki, H.3
Ding, J.4
Yang, Y.H.5
Tian, D.6
-
40
-
-
3042575125
-
Genome-wide identification of NBS genes in rice reveals significant expansion of divergent non-TIR NBS Genes
-
Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in rice reveals significant expansion of divergent non-TIR NBS Genes. Mol Genet Genomics 271:402-415
-
(2004)
Mol Genet Genomics
, vol.271
, pp. 402-415
-
-
Zhou, T.1
Wang, Y.2
Chen, J.Q.3
Araki, H.4
Jing, Z.5
Jiang, K.6
Shen, J.7
Tian, D.8
|