-
1
-
-
21244454414
-
Substantial regional variation in substitution rates in the human genome: Importance of GC content, gene density, and telomere-specific effects
-
Arndt PF, Hwa T, Petrov DA. 2005. Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. J Mol Evol. 60:748-763.
-
(2005)
J Mol Evol
, vol.60
, pp. 748-763
-
-
Arndt, P.F.1
Hwa, T.2
Petrov, D.A.3
-
2
-
-
49849099738
-
Quantifying the decanalizing effects of spontaneous mutations in rhabditid nematodes
-
Baer CF. 2008. Quantifying the decanalizing effects of spontaneous mutations in rhabditid nematodes. Am Nat. 172:272-281.
-
(2008)
Am Nat
, vol.172
, pp. 272-281
-
-
Baer, C.F.1
-
3
-
-
34447564992
-
Mutation rate variation in multicellular eukaryotes: Causes and consequences
-
Baer CF, Miyamoto MM, Denver DR. 2007. Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat Rev Genet. 8:619-631.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 619-631
-
-
Baer, C.F.1
Miyamoto, M.M.2
Denver, D.R.3
-
4
-
-
33751323409
-
Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: Role of genotype, environment and stress
-
Baer CF, Phillips N, Ostrow D, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Mezerhane E. 2006. Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: role of genotype, environment and stress. Genetics. 174:1387-1395.
-
(2006)
Genetics
, vol.174
, pp. 1387-1395
-
-
Baer, C.F.1
Phillips, N.2
Ostrow, D.3
Avalos, A.4
Blanton, D.5
Boggs, A.6
Keller, T.7
Levy, L.8
Mezerhane, E.9
-
5
-
-
20244378694
-
-
Baer CF, Shaw F, Steding C, et al. (11 co-authors). 2005. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc Natl Acad Sci USA. 102:5785-5790.
-
Baer CF, Shaw F, Steding C, et al. (11 co-authors). 2005. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc Natl Acad Sci USA. 102:5785-5790.
-
-
-
-
6
-
-
33845788256
-
Low impact of germline transposition on the rate of mildly deleterious mutation in Caenorhabditis elegans
-
Begin M, Schoen DJ. 2006. Low impact of germline transposition on the rate of mildly deleterious mutation in Caenorhabditis elegans. Genetics. 174:2129-2136.
-
(2006)
Genetics
, vol.174
, pp. 2129-2136
-
-
Begin, M.1
Schoen, D.J.2
-
7
-
-
40849130956
-
Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate
-
Cutter AD. 2008. Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate. Mol Biol Evol. 25:778-786.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 778-786
-
-
Cutter, A.D.1
-
8
-
-
33747825367
-
Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae
-
Cutter AD, Felix MA, Barriere A, Charlesworth D. 2006. Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae. Genetics. 173:2021-2031.
-
(2006)
Genetics
, vol.173
, pp. 2021-2031
-
-
Cutter, A.D.1
Felix, M.A.2
Barriere, A.3
Charlesworth, D.4
-
9
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
-
Denver DR, Morris K, Lynch M, Thomas WK. 2004. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature. 430:679-682.
-
(2004)
Nature
, vol.430
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
10
-
-
0037346501
-
Microsatellite Analyser (MSA): A platform independent analysis tool for large microsatellite data sets
-
Dieringer D, Schlotterer C. 2003. Microsatellite Analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes. 3:167-169.
-
(2003)
Mol Ecol Notes
, vol.3
, pp. 167-169
-
-
Dieringer, D.1
Schlotterer, C.2
-
11
-
-
39549106232
-
Hakuna Nematoda: Genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C briggsae
-
Dolgin ES, Felix MA, Cutter AD. 2008. Hakuna Nematoda: genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C briggsae. Heredity. 100:304-315.
-
(2008)
Heredity
, vol.100
, pp. 304-315
-
-
Dolgin, E.S.1
Felix, M.A.2
Cutter, A.D.3
-
13
-
-
0032786233
-
A phylogenomic study of DNA repair genes, proteins, and processes
-
Eisen JA, Hanawalt PC. 1999. A phylogenomic study of DNA repair genes, proteins, and processes. Mut Res-DNA Repair. 435:171-213.
-
(1999)
Mut Res-DNA Repair
, vol.435
, pp. 171-213
-
-
Eisen, J.A.1
Hanawalt, P.C.2
-
14
-
-
3042782819
-
Microsatellites: Simple sequences with complex evolution
-
Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5:435-445.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
16
-
-
18544404720
-
-
Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D. (17 co-authors). 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Gen Res. 13:13-26.
-
Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D. (17 co-authors). 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Gen Res. 13:13-26.
-
-
-
-
18
-
-
0013979181
-
Effect of linkage on limits to artificial selection
-
Hill WG, Robertson A. 1966. Effect of linkage on limits to artificial selection. Genet Res. 8:269-294.
-
(1966)
Genet Res
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
19
-
-
41749096136
-
Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
-
Howe DK, Denver DR. 2008. Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution. BMC Evol Biol. 8:62.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 62
-
-
Howe, D.K.1
Denver, D.R.2
-
20
-
-
0034646080
-
Microsatellite instability induced, by hydrogen peroxide in Escherichia coli
-
Jackson AL, Loeb LA. 2000. Microsatellite instability induced, by hydrogen peroxide in Escherichia coli. Mutat Res-Fundam Mol Mech Mutagen. 447:187-198.
-
(2000)
Mutat Res-Fundam Mol Mech Mutagen
, vol.447
, pp. 187-198
-
-
Jackson, A.L.1
Loeb, L.A.2
-
21
-
-
38049048656
-
The genome-wide determinants of human and chimpanzee microsatellite evolution
-
Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. 2008. The genome-wide determinants of human and chimpanzee microsatellite evolution. Gen Res. 18:30-38.
-
(2008)
Gen Res
, vol.18
, pp. 30-38
-
-
Kelkar, Y.D.1
Tyekucheva, S.2
Chiaromonte, F.3
Makova, K.D.4
-
22
-
-
0000800333
-
On probability of fixation of mutant genes in a population
-
Kimura M. 1962. On probability of fixation of mutant genes in a population. Genetics. 47:713-719.
-
(1962)
Genetics
, vol.47
, pp. 713-719
-
-
Kimura, M.1
-
23
-
-
0014421064
-
Evolutionary rate at the molecular level
-
Kimura M. 1968. Evolutionary rate at the molecular level. Nature. 217:624-626.
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
24
-
-
75949146309
-
Number of alleles that can be maintained in a finite population
-
Kimura M, Crow JF. 1964. Number of alleles that can be maintained in a finite population. Genetics. 49:725-738.
-
(1964)
Genetics
, vol.49
, pp. 725-738
-
-
Kimura, M.1
Crow, J.F.2
-
25
-
-
0345748184
-
Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles
-
Kimura M, Ohta T. 1975. Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles. Proc Natl Acad Sci USA. 72:2761-2764.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 2761-2764
-
-
Kimura, M.1
Ohta, T.2
-
26
-
-
33644636376
-
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
-
Kondrashov FA, Ogurtsov AY, Kondrashov AS. 2006. Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. J Theor Biol. 240:616-626.
-
(2006)
J Theor Biol
, vol.240
, pp. 616-626
-
-
Kondrashov, F.A.1
Ogurtsov, A.Y.2
Kondrashov, A.S.3
-
27
-
-
33750543992
-
Mutation accumulation in the intestine and colon of mice deficient in two intracellular glutathione peroxidases
-
Lee DH, Esworthy RS, Chu C, Pfeifer GP, Chu FF. 2006. Mutation accumulation in the intestine and colon of mice deficient in two intracellular glutathione peroxidases. Cancer Res. 66:9845-9851.
-
(2006)
Cancer Res
, vol.66
, pp. 9845-9851
-
-
Lee, D.H.1
Esworthy, R.S.2
Chu, C.3
Pfeifer, G.P.4
Chu, F.F.5
-
28
-
-
3042616134
-
Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile
-
Lercher MJ, Chamary JV, Hurst LD. 2004. Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile. Genome Res. 14:1002-1013.
-
(2004)
Genome Res
, vol.14
, pp. 1002-1013
-
-
Lercher, M.J.1
Chamary, J.V.2
Hurst, L.D.3
-
29
-
-
0027511407
-
Genomic position influences spontaneous mutagenesis of an integrated retroviral vector containing the HPRT cDNA as target for mutagenesis
-
Lichtenauer-Kaligis EGR, van der Velde-van Dijke T, den Dulk H, van de Putte P, Giphart-Gassler M, Tasseron-de Jong JG. 1993. Genomic position influences spontaneous mutagenesis of an integrated retroviral vector containing the HPRT cDNA as target for mutagenesis. Hum Mol Genet. 2:173-182.
-
(1993)
Hum Mol Genet
, vol.2
, pp. 173-182
-
-
Lichtenauer-Kaligis, E.G.R.1
van der Velde-van Dijke, T.2
den Dulk, H.3
van de Putte, P.4
Giphart-Gassler, M.5
Tasseron-de Jong, J.G.6
-
31
-
-
0037197985
-
A single domestication for maize shown by multilocus microsatellite genotyping
-
Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez GJ, Buckler E, Doebley J. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci USA. 99:6080-6084.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6080-6084
-
-
Matsuoka, Y.1
Vigouroux, Y.2
Goodman, M.M.3
Sanchez, G.J.4
Buckler, E.5
Doebley, J.6
-
32
-
-
34547127190
-
Mutational bias for body size in Rhabditid nematodes
-
Ostrow D, Phillips N, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Rosenbloom J, Baer CF. 2007. Mutational bias for body size in Rhabditid nematodes. Genetics. 176:1653-1661.
-
(2007)
Genetics
, vol.176
, pp. 1653-1661
-
-
Ostrow, D.1
Phillips, N.2
Avalos, A.3
Blanton, D.4
Boggs, A.5
Keller, T.6
Levy, L.7
Rosenbloom, J.8
Baer, C.F.9
-
33
-
-
33748912335
-
Evolution of hypervariable microsatellites in apomictic polyploid lineages of Ranunculus carpaticola: Directional bias at dinucleotide loci
-
Paun O, Horandl E. 2006. Evolution of hypervariable microsatellites in apomictic polyploid lineages of Ranunculus carpaticola: directional bias at dinucleotide loci. Genetics. 174:387-398.
-
(2006)
Genetics
, vol.174
, pp. 387-398
-
-
Paun, O.1
Horandl, E.2
-
34
-
-
0035058360
-
Evolution of genome size: New approaches to an old problem
-
Petrov DA. 2001. Evolution of genome size: new approaches to an old problem. Trends Genet. 17:23-28.
-
(2001)
Trends Genet
, vol.17
, pp. 23-28
-
-
Petrov, D.A.1
-
35
-
-
0345070506
-
Mutational equilibrium model of genome size evolution
-
Petrov DA. 2002. Mutational equilibrium model of genome size evolution. Theor Popul Biol. 61:531-544.
-
(2002)
Theor Popul Biol
, vol.61
, pp. 531-544
-
-
Petrov, D.A.1
-
36
-
-
34249006235
-
Chromatin structure and evolution in the human genome
-
Prendergast JGD, Campbell H, Gilbert N, Dunlop MG, Bickmore WA, Semple CAM. 2007. Chromatin structure and evolution in the human genome. BMC Evol Biol. 7.
-
(2007)
BMC Evol Biol
, vol.7
-
-
Prendergast, J.G.D.1
Campbell, H.2
Gilbert, N.3
Dunlop, M.G.4
Bickmore, W.A.5
Semple, C.A.M.6
-
37
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Krawetz S, Misener S, editors, Totowa NJ, Humana Press. p
-
Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics methods and protocols: methods in molecular biology. Totowa (NJ): Humana Press. p. 365-386.
-
(2000)
Bioinformatics methods and protocols: Methods in molecular biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.J.2
-
38
-
-
33745121154
-
Positive natural selection in the human lineage
-
Sabeti PC, Schaffner SF, Fry B, Lohmueller J, Varilly P, Shamovsky O, Palma A, Mikkelsen TS, Altshuler D, Lander ES. 2006. Positive natural selection in the human lineage. Science. 312:1614-1620.
-
(2006)
Science
, vol.312
, pp. 1614-1620
-
-
Sabeti, P.C.1
Schaffner, S.F.2
Fry, B.3
Lohmueller, J.4
Varilly, P.5
Shamovsky, O.6
Palma, A.7
Mikkelsen, T.S.8
Altshuler, D.9
Lander, E.S.10
-
39
-
-
0033953635
-
An economic method for the fluorescent labeling of PCR fragments
-
Schuelke M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol. 18:233-234.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 233-234
-
-
Schuelke, M.1
-
40
-
-
45849121794
-
The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex
-
Seyfert AL, Cristescu MEA, Frisse L, Schaack S, Thomas WK, Lynch M. 2008. The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex. Genetics. 178:2113-2121.
-
(2008)
Genetics
, vol.178
, pp. 2113-2121
-
-
Seyfert, A.L.1
Cristescu, M.E.A.2
Frisse, L.3
Schaack, S.4
Thomas, W.K.5
Lynch, M.6
-
41
-
-
0037274641
-
Population genetics of Caenorhabditis elegans: The paradox of low polymorphism in a widespread species
-
Sivasundar A, Hey J. 2003. Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species. Genetics. 163:147-157.
-
(2003)
Genetics
, vol.163
, pp. 147-157
-
-
Sivasundar, A.1
Hey, J.2
-
42
-
-
0034542564
-
The evolution of mutation rates: Separating causes from consequences
-
Sniegowski PD, Gerrish PJ, Johnson T, Shaver A. 2000. The evolution of mutation rates: separating causes from consequences. Bioessays. 22:1057-1066.
-
(2000)
Bioessays
, vol.22
, pp. 1057-1066
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Johnson, T.3
Shaver, A.4
-
43
-
-
0032897573
-
The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans
-
Vassilieva LL, Lynch M. 1999. The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans. Genetics. 151:119-129.
-
(1999)
Genetics
, vol.151
, pp. 119-129
-
-
Vassilieva, L.L.1
Lynch, M.2
-
44
-
-
0036667686
-
Rate and pattern of mutation at microsatellite loci in maize
-
Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WF, Smith JSC, Doebley J. 2002. Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol. 19:1251-1260.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1251-1260
-
-
Vigouroux, Y.1
Jaqueth, J.S.2
Matsuoka, Y.3
Smith, O.S.4
Beavis, W.F.5
Smith, J.S.C.6
Doebley, J.7
-
45
-
-
0026749345
-
A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged-sites
-
Williams BD, Schrank B, Huynh C, Shownkeen R, Waterston RH. 1992. A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged-sites. Genetics. 131:609-624.
-
(1992)
Genetics
, vol.131
, pp. 609-624
-
-
Williams, B.D.1
Schrank, B.2
Huynh, C.3
Shownkeen, R.4
Waterston, R.H.5
-
46
-
-
0012830550
-
Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae
-
Witherspoon DJ, Robertson HM. 2003. Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae. J Mol Evol. 56:751-769.
-
(2003)
J Mol Evol
, vol.56
, pp. 751-769
-
-
Witherspoon, D.J.1
Robertson, H.M.2
-
47
-
-
84949346776
-
Generalized linear mixed models: A pseudo-likelihood approach
-
Wolfinger R, O'Connell M. 1993. Generalized linear mixed models: a pseudo-likelihood approach. J Stat Comput Simul. 4:233-243.
-
(1993)
J Stat Comput Simul
, vol.4
, pp. 233-243
-
-
Wolfinger, R.1
O'Connell, M.2
|