메뉴 건너뛰기




Volumn 26, Issue 3, 2009, Pages 659-669

Spontaneous mutational and standing genetic (Co)variation at dinucleotide microsatellites in Caenorhabditis briggsae and Caenorhabditis elegans

Author keywords

Heterozygosity; Microsatellite; Mutation accumulation; Mutational variance; Spontaneous mutation; Tandem repeat

Indexed keywords

ANIMALS; CAENORHABDITIS; CAENORHABDITIS ELEGANS; GENETIC VARIATION; KINETICS; MICROSATELLITE REPEATS; MUTATION; SELECTION (GENETICS);

EID: 60149095320     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn287     Document Type: Article
Times cited : (28)

References (47)
  • 1
    • 21244454414 scopus 로고    scopus 로고
    • Substantial regional variation in substitution rates in the human genome: Importance of GC content, gene density, and telomere-specific effects
    • Arndt PF, Hwa T, Petrov DA. 2005. Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. J Mol Evol. 60:748-763.
    • (2005) J Mol Evol , vol.60 , pp. 748-763
    • Arndt, P.F.1    Hwa, T.2    Petrov, D.A.3
  • 2
    • 49849099738 scopus 로고    scopus 로고
    • Quantifying the decanalizing effects of spontaneous mutations in rhabditid nematodes
    • Baer CF. 2008. Quantifying the decanalizing effects of spontaneous mutations in rhabditid nematodes. Am Nat. 172:272-281.
    • (2008) Am Nat , vol.172 , pp. 272-281
    • Baer, C.F.1
  • 3
    • 34447564992 scopus 로고    scopus 로고
    • Mutation rate variation in multicellular eukaryotes: Causes and consequences
    • Baer CF, Miyamoto MM, Denver DR. 2007. Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat Rev Genet. 8:619-631.
    • (2007) Nat Rev Genet , vol.8 , pp. 619-631
    • Baer, C.F.1    Miyamoto, M.M.2    Denver, D.R.3
  • 4
    • 33751323409 scopus 로고    scopus 로고
    • Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: Role of genotype, environment and stress
    • Baer CF, Phillips N, Ostrow D, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Mezerhane E. 2006. Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: role of genotype, environment and stress. Genetics. 174:1387-1395.
    • (2006) Genetics , vol.174 , pp. 1387-1395
    • Baer, C.F.1    Phillips, N.2    Ostrow, D.3    Avalos, A.4    Blanton, D.5    Boggs, A.6    Keller, T.7    Levy, L.8    Mezerhane, E.9
  • 5
    • 20244378694 scopus 로고    scopus 로고
    • Baer CF, Shaw F, Steding C, et al. (11 co-authors). 2005. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc Natl Acad Sci USA. 102:5785-5790.
    • Baer CF, Shaw F, Steding C, et al. (11 co-authors). 2005. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc Natl Acad Sci USA. 102:5785-5790.
  • 6
    • 33845788256 scopus 로고    scopus 로고
    • Low impact of germline transposition on the rate of mildly deleterious mutation in Caenorhabditis elegans
    • Begin M, Schoen DJ. 2006. Low impact of germline transposition on the rate of mildly deleterious mutation in Caenorhabditis elegans. Genetics. 174:2129-2136.
    • (2006) Genetics , vol.174 , pp. 2129-2136
    • Begin, M.1    Schoen, D.J.2
  • 7
    • 40849130956 scopus 로고    scopus 로고
    • Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate
    • Cutter AD. 2008. Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate. Mol Biol Evol. 25:778-786.
    • (2008) Mol Biol Evol , vol.25 , pp. 778-786
    • Cutter, A.D.1
  • 8
    • 33747825367 scopus 로고    scopus 로고
    • Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae
    • Cutter AD, Felix MA, Barriere A, Charlesworth D. 2006. Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae. Genetics. 173:2021-2031.
    • (2006) Genetics , vol.173 , pp. 2021-2031
    • Cutter, A.D.1    Felix, M.A.2    Barriere, A.3    Charlesworth, D.4
  • 9
    • 3943059570 scopus 로고    scopus 로고
    • High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
    • Denver DR, Morris K, Lynch M, Thomas WK. 2004. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature. 430:679-682.
    • (2004) Nature , vol.430 , pp. 679-682
    • Denver, D.R.1    Morris, K.2    Lynch, M.3    Thomas, W.K.4
  • 10
    • 0037346501 scopus 로고    scopus 로고
    • Microsatellite Analyser (MSA): A platform independent analysis tool for large microsatellite data sets
    • Dieringer D, Schlotterer C. 2003. Microsatellite Analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes. 3:167-169.
    • (2003) Mol Ecol Notes , vol.3 , pp. 167-169
    • Dieringer, D.1    Schlotterer, C.2
  • 11
    • 39549106232 scopus 로고    scopus 로고
    • Hakuna Nematoda: Genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C briggsae
    • Dolgin ES, Felix MA, Cutter AD. 2008. Hakuna Nematoda: genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C briggsae. Heredity. 100:304-315.
    • (2008) Heredity , vol.100 , pp. 304-315
    • Dolgin, E.S.1    Felix, M.A.2    Cutter, A.D.3
  • 13
    • 0032786233 scopus 로고    scopus 로고
    • A phylogenomic study of DNA repair genes, proteins, and processes
    • Eisen JA, Hanawalt PC. 1999. A phylogenomic study of DNA repair genes, proteins, and processes. Mut Res-DNA Repair. 435:171-213.
    • (1999) Mut Res-DNA Repair , vol.435 , pp. 171-213
    • Eisen, J.A.1    Hanawalt, P.C.2
  • 14
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5:435-445.
    • (2004) Nat Rev Genet , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 16
    • 18544404720 scopus 로고    scopus 로고
    • Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D. (17 co-authors). 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Gen Res. 13:13-26.
    • Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D. (17 co-authors). 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Gen Res. 13:13-26.
  • 18
    • 0013979181 scopus 로고
    • Effect of linkage on limits to artificial selection
    • Hill WG, Robertson A. 1966. Effect of linkage on limits to artificial selection. Genet Res. 8:269-294.
    • (1966) Genet Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 19
    • 41749096136 scopus 로고    scopus 로고
    • Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
    • Howe DK, Denver DR. 2008. Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution. BMC Evol Biol. 8:62.
    • (2008) BMC Evol Biol , vol.8 , pp. 62
    • Howe, D.K.1    Denver, D.R.2
  • 20
    • 0034646080 scopus 로고    scopus 로고
    • Microsatellite instability induced, by hydrogen peroxide in Escherichia coli
    • Jackson AL, Loeb LA. 2000. Microsatellite instability induced, by hydrogen peroxide in Escherichia coli. Mutat Res-Fundam Mol Mech Mutagen. 447:187-198.
    • (2000) Mutat Res-Fundam Mol Mech Mutagen , vol.447 , pp. 187-198
    • Jackson, A.L.1    Loeb, L.A.2
  • 21
    • 38049048656 scopus 로고    scopus 로고
    • The genome-wide determinants of human and chimpanzee microsatellite evolution
    • Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. 2008. The genome-wide determinants of human and chimpanzee microsatellite evolution. Gen Res. 18:30-38.
    • (2008) Gen Res , vol.18 , pp. 30-38
    • Kelkar, Y.D.1    Tyekucheva, S.2    Chiaromonte, F.3    Makova, K.D.4
  • 22
    • 0000800333 scopus 로고
    • On probability of fixation of mutant genes in a population
    • Kimura M. 1962. On probability of fixation of mutant genes in a population. Genetics. 47:713-719.
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 23
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura M. 1968. Evolutionary rate at the molecular level. Nature. 217:624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 24
    • 75949146309 scopus 로고
    • Number of alleles that can be maintained in a finite population
    • Kimura M, Crow JF. 1964. Number of alleles that can be maintained in a finite population. Genetics. 49:725-738.
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.F.2
  • 25
    • 0345748184 scopus 로고
    • Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles
    • Kimura M, Ohta T. 1975. Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles. Proc Natl Acad Sci USA. 72:2761-2764.
    • (1975) Proc Natl Acad Sci USA , vol.72 , pp. 2761-2764
    • Kimura, M.1    Ohta, T.2
  • 26
    • 33644636376 scopus 로고    scopus 로고
    • Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
    • Kondrashov FA, Ogurtsov AY, Kondrashov AS. 2006. Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. J Theor Biol. 240:616-626.
    • (2006) J Theor Biol , vol.240 , pp. 616-626
    • Kondrashov, F.A.1    Ogurtsov, A.Y.2    Kondrashov, A.S.3
  • 27
    • 33750543992 scopus 로고    scopus 로고
    • Mutation accumulation in the intestine and colon of mice deficient in two intracellular glutathione peroxidases
    • Lee DH, Esworthy RS, Chu C, Pfeifer GP, Chu FF. 2006. Mutation accumulation in the intestine and colon of mice deficient in two intracellular glutathione peroxidases. Cancer Res. 66:9845-9851.
    • (2006) Cancer Res , vol.66 , pp. 9845-9851
    • Lee, D.H.1    Esworthy, R.S.2    Chu, C.3    Pfeifer, G.P.4    Chu, F.F.5
  • 28
    • 3042616134 scopus 로고    scopus 로고
    • Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile
    • Lercher MJ, Chamary JV, Hurst LD. 2004. Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile. Genome Res. 14:1002-1013.
    • (2004) Genome Res , vol.14 , pp. 1002-1013
    • Lercher, M.J.1    Chamary, J.V.2    Hurst, L.D.3
  • 33
    • 33748912335 scopus 로고    scopus 로고
    • Evolution of hypervariable microsatellites in apomictic polyploid lineages of Ranunculus carpaticola: Directional bias at dinucleotide loci
    • Paun O, Horandl E. 2006. Evolution of hypervariable microsatellites in apomictic polyploid lineages of Ranunculus carpaticola: directional bias at dinucleotide loci. Genetics. 174:387-398.
    • (2006) Genetics , vol.174 , pp. 387-398
    • Paun, O.1    Horandl, E.2
  • 34
    • 0035058360 scopus 로고    scopus 로고
    • Evolution of genome size: New approaches to an old problem
    • Petrov DA. 2001. Evolution of genome size: new approaches to an old problem. Trends Genet. 17:23-28.
    • (2001) Trends Genet , vol.17 , pp. 23-28
    • Petrov, D.A.1
  • 35
    • 0345070506 scopus 로고    scopus 로고
    • Mutational equilibrium model of genome size evolution
    • Petrov DA. 2002. Mutational equilibrium model of genome size evolution. Theor Popul Biol. 61:531-544.
    • (2002) Theor Popul Biol , vol.61 , pp. 531-544
    • Petrov, D.A.1
  • 37
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S, Misener S, editors, Totowa NJ, Humana Press. p
    • Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics methods and protocols: methods in molecular biology. Totowa (NJ): Humana Press. p. 365-386.
    • (2000) Bioinformatics methods and protocols: Methods in molecular biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 39
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labeling of PCR fragments
    • Schuelke M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol. 18:233-234.
    • (2000) Nat Biotechnol , vol.18 , pp. 233-234
    • Schuelke, M.1
  • 40
    • 45849121794 scopus 로고    scopus 로고
    • The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex
    • Seyfert AL, Cristescu MEA, Frisse L, Schaack S, Thomas WK, Lynch M. 2008. The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex. Genetics. 178:2113-2121.
    • (2008) Genetics , vol.178 , pp. 2113-2121
    • Seyfert, A.L.1    Cristescu, M.E.A.2    Frisse, L.3    Schaack, S.4    Thomas, W.K.5    Lynch, M.6
  • 41
    • 0037274641 scopus 로고    scopus 로고
    • Population genetics of Caenorhabditis elegans: The paradox of low polymorphism in a widespread species
    • Sivasundar A, Hey J. 2003. Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species. Genetics. 163:147-157.
    • (2003) Genetics , vol.163 , pp. 147-157
    • Sivasundar, A.1    Hey, J.2
  • 42
    • 0034542564 scopus 로고    scopus 로고
    • The evolution of mutation rates: Separating causes from consequences
    • Sniegowski PD, Gerrish PJ, Johnson T, Shaver A. 2000. The evolution of mutation rates: separating causes from consequences. Bioessays. 22:1057-1066.
    • (2000) Bioessays , vol.22 , pp. 1057-1066
    • Sniegowski, P.D.1    Gerrish, P.J.2    Johnson, T.3    Shaver, A.4
  • 43
    • 0032897573 scopus 로고    scopus 로고
    • The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans
    • Vassilieva LL, Lynch M. 1999. The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans. Genetics. 151:119-129.
    • (1999) Genetics , vol.151 , pp. 119-129
    • Vassilieva, L.L.1    Lynch, M.2
  • 45
    • 0026749345 scopus 로고
    • A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged-sites
    • Williams BD, Schrank B, Huynh C, Shownkeen R, Waterston RH. 1992. A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged-sites. Genetics. 131:609-624.
    • (1992) Genetics , vol.131 , pp. 609-624
    • Williams, B.D.1    Schrank, B.2    Huynh, C.3    Shownkeen, R.4    Waterston, R.H.5
  • 46
    • 0012830550 scopus 로고    scopus 로고
    • Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae
    • Witherspoon DJ, Robertson HM. 2003. Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae. J Mol Evol. 56:751-769.
    • (2003) J Mol Evol , vol.56 , pp. 751-769
    • Witherspoon, D.J.1    Robertson, H.M.2
  • 47
    • 84949346776 scopus 로고
    • Generalized linear mixed models: A pseudo-likelihood approach
    • Wolfinger R, O'Connell M. 1993. Generalized linear mixed models: a pseudo-likelihood approach. J Stat Comput Simul. 4:233-243.
    • (1993) J Stat Comput Simul , vol.4 , pp. 233-243
    • Wolfinger, R.1    O'Connell, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.