-
1
-
-
1542328859
-
Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: Correlation with mutation spectra in vivo
-
Beale, R. C., S. K. Petersen-Mahrt, I. N. Watt, R. S. Harris, C. Rada, and M. S. Neuberger. 2004. Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo. J. Mol. Biol. 337:585-596.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 585-596
-
-
Beale, R.C.1
Petersen-Mahrt, S.K.2
Watt, I.N.3
Harris, R.S.4
Rada, C.5
Neuberger, M.S.6
-
2
-
-
0036176509
-
The challenge of viral reservoirs in HIV-1 infection
-
Blankson, J. N., D. Persaud, and R. F. Siliciano. 2002. The challenge of viral reservoirs in HIV-1 infection. Annu. Rev. Med. 53:557-593.
-
(2002)
Annu. Rev. Med.
, vol.53
, pp. 557-593
-
-
Blankson, J.N.1
Persaud, D.2
Siliciano, R.F.3
-
3
-
-
0029034611
-
A highly defective HIV-1 group O provirus: Evidence for the role of local sequence determinants in G→A hypermutation during negative-strand viral DNA synthesis
-
Borman, A. M., C. Quillent, P. Charneau, K. M. Kean, and F. Clavel. 1995. A highly defective HIV-1 group O provirus: evidence for the role of local sequence determinants in G→A hypermutation during negative-strand viral DNA synthesis. Virology 208:601-609.
-
(1995)
Virology
, vol.208
, pp. 601-609
-
-
Borman, A.M.1
Quillent, C.2
Charneau, P.3
Kean, K.M.4
Clavel, F.5
-
4
-
-
0030913366
-
Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection
-
Chun, T. W., L. Carruth, D. Finzi, X. Shen, J. A. DiGiuseppe, H. Taylor, M. Hermankova, K. Chadwick, J. Margolick, T. C. Quinn, Y. H. Kuo, R. Brookmeyer, M. A. Zeiger, P. Barditch-Crovo, and R. F. Siliciano. 1997. Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection. Nature 387:183-188.
-
(1997)
Nature
, vol.387
, pp. 183-188
-
-
Chun, T.W.1
Carruth, L.2
Finzi, D.3
Shen, X.4
DiGiuseppe, J.A.5
Taylor, H.6
Hermankova, M.7
Chadwick, K.8
Margolick, J.9
Quinn, T.C.10
Kuo, Y.H.11
Brookmeyer, R.12
Zeiger, M.A.13
Barditch-Crovo, P.14
Siliciano, R.F.15
-
5
-
-
0028792184
-
In vivo fate of HIV-1-infected T cells: Quantitative analysis of the transition to stable latency
-
Chun, T. W., D. Finzi, J. Margolick, K. Chadwick, D. Schwartz, and R. F. Siliciano. 1995. In vivo fate of HIV-1-infected T cells: quantitative analysis of the transition to stable latency. Nat. Med. 1:1284-1290.
-
(1995)
Nat. Med.
, vol.1
, pp. 1284-1290
-
-
Chun, T.W.1
Finzi, D.2
Margolick, J.3
Chadwick, K.4
Schwartz, D.5
Siliciano, R.F.6
-
6
-
-
0032953920
-
+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy
-
+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy. Nat. Med. 5:512-517.
-
(1999)
Nat. Med.
, vol.5
, pp. 512-517
-
-
Finzi, D.1
Blankson, J.2
Siliciano, J.D.3
Margolick, J.B.4
Chadwick, K.5
Pierson, T.6
Smith, K.7
Lisziewicz, J.8
Lori, F.9
Flexner, C.10
Quinn, T.C.11
Chaisson, R.E.12
Rosenberg, E.13
Walker, B.14
Gange, S.15
Gallant, J.16
Siliciano, R.F.17
-
7
-
-
14444273439
-
Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy
-
Finzi, D., M. Hermankova, T. Pierson, L. M. Carruth, C. Buck, R. E. Chaisson, T. C. Quinn, K. Chadwick, J. Margolick, R. Brookmeyer, J. Gallant, M. Markowitz, D. D. Ho, D. D. Richman, and R. F. Siliciano. 1997. Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy. Science 278:1295-1300.
-
(1997)
Science
, vol.278
, pp. 1295-1300
-
-
Finzi, D.1
Hermankova, M.2
Pierson, T.3
Carruth, L.M.4
Buck, C.5
Chaisson, R.E.6
Quinn, T.C.7
Chadwick, K.8
Margolick, J.9
Brookmeyer, R.10
Gallant, J.11
Markowitz, M.12
Ho, D.D.13
Richman, D.D.14
Siliciano, R.F.15
-
8
-
-
0027764391
-
A new type of G→A hypermutation affecting human immunodeficiency virus
-
Fitzgibbon, J. E., S. Mazar, and D. T. Dubin. 1993. A new type of G→A hypermutation affecting human immunodeficiency virus. AIDS Res. Hum. Retrovir. 9:833-838.
-
(1993)
AIDS Res. Hum. Retrovir.
, vol.9
, pp. 833-838
-
-
Fitzgibbon, J.E.1
Mazar, S.2
Dubin, D.T.3
-
9
-
-
0041589542
-
Death by deamination: A novel host restriction system for HIV-1
-
Goff, S. P. 2003. Death by deamination: a novel host restriction system for HIV-1. Cell 114:281-283.
-
(2003)
Cell
, vol.114
, pp. 281-283
-
-
Goff, S.P.1
-
10
-
-
2642523580
-
+ T cells from human immunodeficiency virus type 1 (HlV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes
-
+ T cells from human immunodeficiency virus type 1 (HlV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J. Virol. 78:6122-6133.
-
(2004)
J. Virol.
, vol.78
, pp. 6122-6133
-
-
Han, Y.1
Lassen, K.2
Monie, D.3
Sedaghat, A.R.4
Shimoji, S.5
Liu, X.6
Pierson, T.C.7
Margolick, J.B.8
Siliciano, R.F.9
Siliciano, J.D.10
-
11
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
Harris, R. S., K. N. Bishop, A. M. Sheehy, H. M. Craig, S. K. Petersen-Mahrt, I. N. Watt, M. S. Neuberger, and M. H. Malim. 2003. DNA deamination mediates innate immunity to retroviral infection. Cell 113:803-809.
-
(2003)
Cell
, vol.113
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
Craig, H.M.4
Petersen-Mahrt, S.K.5
Watt, I.N.6
Neuberger, M.S.7
Malim, M.H.8
-
12
-
-
0034946886
-
HIV-1 drug resistance profiles in children and adults with viral load of <50 copies/ml receiving combination therapy
-
Hermankova, M., S. C. Ray, C. Ruff, M. Powell-Davis, R. Ingersoll, R. T. D'Aquila, T. C. Quinn, J. D. Siliciano, R. F. Siliciano, and D. Persaud. 2001. HIV-1 drug resistance profiles in children and adults with viral load of <50 copies/ml receiving combination therapy. JAMA 286:196-207.
-
(2001)
JAMA
, vol.286
, pp. 196-207
-
-
Hermankova, M.1
Ray, S.C.2
Ruff, C.3
Powell-Davis, M.4
Ingersoll, R.5
D'Aquila, R.T.6
Quinn, T.C.7
Siliciano, J.D.8
Siliciano, R.F.9
Persaud, D.10
-
14
-
-
2142829435
-
Genotypic analysis of HIV-1 drag resistance at the limit of detection: Virus production without evolution in treated adults with undetectable HIV loads
-
Kieffer, T. L., M. M. Finucane, R. E. Nettles, T. C. Quinn, K. W. Broman, S. C. Ray, D. Persaud, and R. F. Siliciano. 2004. Genotypic analysis of HIV-1 drag resistance at the limit of detection: virus production without evolution in treated adults with undetectable HIV loads. J. Infect. Dis. 189:1452-1465.
-
(2004)
J. Infect. Dis.
, vol.189
, pp. 1452-1465
-
-
Kieffer, T.L.1
Finucane, M.M.2
Nettles, R.E.3
Quinn, T.C.4
Broman, K.W.5
Ray, S.C.6
Persaud, D.7
Siliciano, R.F.8
-
15
-
-
0004040205
-
-
Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.M.
-
Kuiken, C., B. Foley, B. Hahn, P. Marx, F. McCutchan, J. Mellors, S. Wolinsky, and B. Korber. 2001. HIV sequence compendium 2001. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.M.
-
(2001)
HIV Sequence Compendium 2001
-
-
Kuiken, C.1
Foley, B.2
Hahn, B.3
Marx, P.4
McCutchan, F.5
Mellors, J.6
Wolinsky, S.7
Korber, B.8
-
16
-
-
0038363470
-
Hypermutation of HIV-1 DNA in the absence of the Vif protein
-
Lecossier, D., F. Bouchonnet, F. Clavel, and A. J. Hance. 2003. Hypermutation of HIV-1 DNA in the absence of the Vif protein. Science 300:1112.
-
(2003)
Science
, vol.300
, pp. 1112
-
-
Lecossier, D.1
Bouchonnet, F.2
Clavel, F.3
Hance, A.J.4
-
17
-
-
4143071549
-
APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo
-
Liddament, M. T., W. L. Brown, A. J. Schumacher, and R. S. Harris. 2004. APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo. Curr. Biol. 14:1385-1391.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1385-1391
-
-
Liddament, M.T.1
Brown, W.L.2
Schumacher, A.J.3
Harris, R.S.4
-
18
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
Mangeat, B., P. Turelli, G. Caron, M. Friedli, L. Perrin, and D. Trono. 2003. Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 424:99-103.
-
(2003)
Nature
, vol.424
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
Trono, D.6
-
19
-
-
0038107587
-
Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif
-
Mariani, R., D. Chen, B. Schrofelbauer, F. Navarre, R. Konig, B. Bollman, C. Munk, H. Nymark-McMahon, and N. R. Landau. 2003. Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. Cell 114:21-31.
-
(2003)
Cell
, vol.114
, pp. 21-31
-
-
Mariani, R.1
Chen, D.2
Schrofelbauer, B.3
Navarre, F.4
Konig, R.5
Bollman, B.6
Munk, C.7
Nymark-McMahon, H.8
Landau, N.R.9
-
20
-
-
0344845196
-
HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation
-
Marin, M., K. M. Rose, S. L. Kozak, and D. Kabat. 2003. HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. Nat. Med. 9:1398-1403.
-
(2003)
Nat. Med.
, vol.9
, pp. 1398-1403
-
-
Marin, M.1
Rose, K.M.2
Kozak, S.L.3
Kabat, D.4
-
21
-
-
0034076571
-
+ T lymphocytes in infected children
-
+ T lymphocytes in infected children. J. Clin. Investig. 105:995-1003.
-
(2000)
J. Clin. Investig.
, vol.105
, pp. 995-1003
-
-
Persaud, D.1
Pierson, T.2
Ruff, C.3
Finzi, D.4
Chadwick, K.R.5
Margolick, J.B.6
Ruff, A.7
Hutton, N.8
Ray, S.9
Siliciano, R.F.10
-
22
-
-
0036340605
-
Molecular characterization of preintegration latency in human immunodeficiency virus type 1 infection
-
Pierson, T. C., Y. Zhou, T. L. Kieffer, C. T. Ruff, C. Buck, and R. F. Siliciano. 2002. Molecular characterization of preintegration latency in human immunodeficiency virus type 1 infection. J. Virol. 76:8518-5531.
-
(2002)
J. Virol.
, vol.76
, pp. 8518-5531
-
-
Pierson, T.C.1
Zhou, Y.2
Kieffer, T.L.3
Ruff, C.T.4
Buck, C.5
Siliciano, R.F.6
-
23
-
-
0034124124
-
Detecting hypermutations in viral sequences with an emphasis on G →A hypermutation
-
Rose, P. P., and B. T. Korber. 2000. Detecting hypermutations in viral sequences with an emphasis on G →A hypermutation. Bioinformatics 16: 400-401.
-
(2000)
Bioinformatics
, vol.16
, pp. 400-401
-
-
Rose, P.P.1
Korber, B.T.2
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
1642380210
-
A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)
-
Schrofelbauer, B., D. Chen, and N. R. Landau. 2004. A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif). Proc. Natl. Acad. Sci. USA 101:3927-3932.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3927-3932
-
-
Schrofelbauer, B.1
Chen, D.2
Landau, N.R.3
-
26
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
Sheehy, A. M., N. C. Gaddis, J. D. Choi, and M. H. Malim. 2002. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418:646-650.
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
27
-
-
0344413641
-
The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif
-
Sheehy, A. M., N. C. Gaddis, and M. H. Malim. 2003. The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. Nat. Med. 9:1404-1407.
-
(2003)
Nat. Med.
, vol.9
, pp. 1404-1407
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Malim, M.H.3
-
28
-
-
0038579210
-
+ T cells
-
+ T cells. Nat. Med. 9:727-728.
-
(2003)
Nat. Med.
, vol.9
, pp. 727-728
-
-
Siliciano, J.D.1
Kajdas, J.2
Finzi, D.3
Quinn, T.C.4
Chadwick, K.5
Margolick, J.B.6
Kovacs, C.7
Gange, S.J.8
Siliciano, R.F.9
-
29
-
-
0029956256
-
The human immunodeficiency virus type 1 Vif protein modulates the postpenetration stability of viral nucleoprotein complexes
-
Simon, J. H., and M. H. Malim. 1996. The human immunodeficiency virus type 1 Vif protein modulates the postpenetration stability of viral nucleoprotein complexes. J. Virol. 70:5297-5305.
-
(1996)
J. Virol.
, vol.70
, pp. 5297-5305
-
-
Simon, J.H.1
Malim, M.H.2
-
30
-
-
0141638436
-
HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability
-
Stopak, K., C. de Noronha, W. Yonemoto, and W. C. Greene. 2003. HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. Mol. Cell 12:591-601.
-
(2003)
Mol. Cell
, vol.12
, pp. 591-601
-
-
Stopak, K.1
De Noronha, C.2
Yonemoto, W.3
Greene, W.C.4
-
31
-
-
0025977774
-
Selection, recombination, and G→A hypermutation of human immunodeficiency virus type 1 genomes
-
Vartanian, J. P., A. Meyerhans, B. Asjo, and S. Wain-Hobson. 1991. Selection, recombination, and G→A hypermutation of human immunodeficiency virus type 1 genomes. J. Virol. 65:1779-1788.
-
(1991)
J. Virol.
, vol.65
, pp. 1779-1788
-
-
Vartanian, J.P.1
Meyerhans, A.2
Asjo, B.3
Wain-Hobson, S.4
-
32
-
-
0027179103
-
Vif is crucial for human immunodeficiency virus type 1 proviral DNA synthesis in infected cells
-
von Schwedler, U., J. Song, C. Aiken, and D. Trono. 1993. Vif is crucial for human immunodeficiency virus type 1 proviral DNA synthesis in infected cells. J. Virol. 67:4945-4955.
-
(1993)
J. Virol.
, vol.67
, pp. 4945-4955
-
-
Von Schwedler, U.1
Song, J.2
Aiken, C.3
Trono, D.4
-
33
-
-
3242712200
-
A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins
-
Wiegand, H. L., B. P. Doehle, H. P. Bogerd, and B. R. Cullen. 2004. A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins. EMBO J. 23:2451-2458.
-
(2004)
EMBO J.
, vol.23
, pp. 2451-2458
-
-
Wiegand, H.L.1
Doehle, B.P.2
Bogerd, H.P.3
Cullen, B.R.4
-
34
-
-
1842732157
-
A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion
-
Xu, H., E. S. Svarovskaia, R. Barr, Y. Zhang, M. A. Khan, K. Strebel, and V. K. Pathak. 2004. A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion. Proc. Natl. Acad. Sci. USA 101:5652-5657.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5652-5657
-
-
Xu, H.1
Svarovskaia, E.S.2
Barr, R.3
Zhang, Y.4
Khan, M.A.5
Strebel, K.6
Pathak, V.K.7
-
35
-
-
2342633240
-
Single-strand specificity of AFOBEC3G accounts for minus-strand deamination of the HIV genome
-
Yu, Q., R. Konig, S. Pillai, K. Chiles, M. Kearney, S. Palmer, D. Richman, J. M. Coffin, and N. R. Landau. 2004. Single-strand specificity of AFOBEC3G accounts for minus-strand deamination of the HIV genome. Nat. Struct. Mol. Biol. 11:435-442.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 435-442
-
-
Yu, Q.1
Konig, R.2
Pillai, S.3
Chiles, K.4
Kearney, M.5
Palmer, S.6
Richman, D.7
Coffin, J.M.8
Landau, N.R.9
-
36
-
-
0038004471
-
The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA
-
Zhang, H., B. Yang, R. J. Pomerantz, C. Zhang, S. C. Arunachalam, and L. Gao. 2003. The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature 424:94-98.
-
(2003)
Nature
, vol.424
, pp. 94-98
-
-
Zhang, H.1
Yang, B.2
Pomerantz, R.J.3
Zhang, C.4
Arunachalam, S.C.5
Gao, L.6
|