-
1
-
-
23144436397
-
BhairPred: Prediction of β-hairpins in a protein from multiple alignment information using ANN and SVM techniques
-
Kumar M, Bhasin M, Natt NK, Raghava GPS. BhairPred: prediction of β-hairpins in a protein from multiple alignment information using ANN and SVM techniques. Nucleic Acids Res 2005;33:W154- W159.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kumar, M.1
Bhasin, M.2
Natt, N.K.3
Raghava, G.P.S.4
-
2
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
3
-
-
0034327349
-
Prediction of tight turns and their types in proteins
-
Chou KC. Prediction of tight turns and their types in proteins. Anal Biochem 2000;286:1-16.
-
(2000)
Anal Biochem
, vol.286
, pp. 1-16
-
-
Chou, K.C.1
-
4
-
-
0021779081
-
-
Rose GD, Gierasch LM, Smith JA. Turns in peptides and proteins. Adv Protein Chem 1985;37:1-109.
-
Rose GD, Gierasch LM, Smith JA. Turns in peptides and proteins. Adv Protein Chem 1985;37:1-109.
-
-
-
-
5
-
-
18844414326
-
High accuracy prediction of β-turns and their types using propensities and multiple alignments
-
Fuchs PFJ, Alix AJP. High accuracy prediction of β-turns and their types using propensities and multiple alignments. Proteins 2005;59: 828-839.
-
(2005)
Proteins
, vol.59
, pp. 828-839
-
-
Fuchs, P.F.J.1
Alix, A.J.P.2
-
7
-
-
0015967881
-
Conformational parameters for amino acids in helical, b-sheet and random coil regions calculated from proteins
-
Chou PY, Fasman GD. Conformational parameters for amino acids in helical, b-sheet and random coil regions calculated from proteins. Biochemistry 1974;13:211-223.
-
(1974)
Biochemistry
, vol.13
, pp. 211-223
-
-
Chou, P.Y.1
Fasman, G.D.2
-
8
-
-
0024279235
-
Analysis and prediction of the different types of β-turn in proteins
-
Wilmot CM, Thornton JM. Analysis and prediction of the different types of β-turn in proteins. J Mol Biol 1988;203:221-232.
-
(1988)
J Mol Biol
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
9
-
-
0028566270
-
A revised set of potentials for β- turn formation in proteins
-
Hutchinson EG, Thornton JM. A revised set of potentials for β- turn formation in proteins. Protein Sci 1994;3:2207-2213.
-
(1994)
Protein Sci
, vol.3
, pp. 2207-2213
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
10
-
-
0030808140
-
Classification and prediction of beta-turn types
-
Chou KC, Blinn JR. Classification and prediction of beta-turn types. J Prot Chem 1997;16:575-595.
-
(1997)
J Prot Chem
, vol.16
, pp. 575-595
-
-
Chou, K.C.1
Blinn, J.R.2
-
11
-
-
0031149431
-
Prediction of β-turns in proteins by 1-4 and 2-3 correlation model
-
Zhang CT, Chou KC. Prediction of β-turns in proteins by 1-4 and 2-3 correlation model. Biopolymers 1997;41:673-702.
-
(1997)
Biopolymers
, vol.41
, pp. 673-702
-
-
Zhang, C.T.1
Chou, K.C.2
-
13
-
-
0036855904
-
An evaluation of( -turn prediction methods
-
Kaur H, Raghava GP. An evaluation of( -turn prediction methods, Bioinformatics 2002;18:1508-1514.
-
(2002)
Bioinformatics
, vol.18
, pp. 1508-1514
-
-
Kaur, H.1
Raghava, G.P.2
-
14
-
-
0043207426
-
Prediction of β-turns with learning machines
-
Cai Y-D, Liu X-J, Li Y-X, Xu X-b, Chou K-C. Prediction of β-turns with learning machines. Peptides 2003;24:665-669.
-
(2003)
Peptides
, vol.24
, pp. 665-669
-
-
Cai, Y.-D.1
Liu, X.-J.2
Li, Y.-X.3
Xu, X.-B.4
Chou, K.-C.5
-
15
-
-
19544387461
-
Improved method for predicting β-turn using support vector machine
-
Zhang Q, Yoon S, Welsh WJ. Improved method for predicting β-turn using support vector machine. Bioinformatics 2005;21:2370-2374.
-
(2005)
Bioinformatics
, vol.21
, pp. 2370-2374
-
-
Zhang, Q.1
Yoon, S.2
Welsh, W.J.3
-
16
-
-
0032900496
-
Prediction of the location and type of β-turns in proteins using neural networks
-
Shepherd AJ, Gorse D, Thornton JM. Prediction of the location and type of β-turns in proteins using neural networks. Protein Sci 1998; 8:1045-1055.
-
(1998)
Protein Sci
, vol.8
, pp. 1045-1055
-
-
Shepherd, A.J.1
Gorse, D.2
Thornton, J.M.3
-
17
-
-
8844252295
-
A neural network method for prediction of β-turn-types in proteins using evolutionary information
-
Kaur H, Raghava GPS. A neural network method for prediction of β-turn-types in proteins using evolutionary information. Bioinformatics 2004;20:2751-2758.
-
(2004)
Bioinformatics
, vol.20
, pp. 2751-2758
-
-
Kaur, H.1
Raghava, G.P.S.2
-
18
-
-
0037436339
-
Relibase: Design and development of a database for comprehensive analysis of protein ligand interactions
-
Hendlich M, Bergner A, Giinther J, Klebe G. Relibase: design and development of a database for comprehensive analysis of protein ligand interactions. J Mol Biol 2003;326:607-620.
-
(2003)
J Mol Biol
, vol.326
, pp. 607-620
-
-
Hendlich, M.1
Bergner, A.2
Giinther, J.3
Klebe, G.4
-
19
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
25
-
-
0345040882
-
Applications of support vector machines in bioinformatics
-
Byvatov E, Schneider G. Applications of support vector machines in bioinformatics. Appl Bioinf 2003;2:67-77.
-
(2003)
Appl Bioinf
, vol.2
, pp. 67-77
-
-
Byvatov, E.1
Schneider, G.2
-
27
-
-
0000672424
-
Fast learning in networks of locally tuned processing units
-
Moody J, Darken CJ. Fast learning in networks of locally tuned processing units. Neural Comput 1989;1:281-294.
-
(1989)
Neural Comput
, vol.1
, pp. 281-294
-
-
Moody, J.1
Darken, C.J.2
-
28
-
-
0031735526
-
Artificial neural networks for computer- based molecular design
-
Schneider G, Wrede P. Artificial neural networks for computer- based molecular design. Prog Biophys Mol Biol 1998;70:175-222.
-
(1998)
Prog Biophys Mol Biol
, vol.70
, pp. 175-222
-
-
Schneider, G.1
Wrede, P.2
-
29
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975; 405:442-451.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
30
-
-
0036904104
-
A virtual screening method for prediction of the hERG potassium channel liability of compound libraries
-
Roche O, Trube G, Zuegge J, Pflimlin P, Alanine A, Schneider G. A virtual screening method for prediction of the hERG potassium channel liability of compound libraries. ChemBioChem 2002;3:455-459.
-
(2002)
ChemBioChem
, vol.3
, pp. 455-459
-
-
Roche, O.1
Trube, G.2
Zuegge, J.3
Pflimlin, P.4
Alanine, A.5
Schneider, G.6
-
32
-
-
0036790872
-
Statistical tools to assess the reliability of self-organizing maps
-
de Bodt E, Cottrell M, Verleyse M. Statistical tools to assess the reliability of self-organizing maps. Neural Networks 2002;15:967-978.
-
(2002)
Neural Networks
, vol.15
, pp. 967-978
-
-
de Bodt, E.1
Cottrell, M.2
Verleyse, M.3
-
33
-
-
0027092678
-
Selection of a representative set of structures from the Brookhaven Protein Data Bank
-
Hobohm U, Scharf M, Schneider R, Sander C. Selection of a representative set of structures from the Brookhaven Protein Data Bank. Protein Sci 1992;1:409-417.
-
(1992)
Protein Sci
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
35
-
-
0025690309
-
Situations of γ-turns in proteins. Their relation to α-helices, β-sheets and ligand binding sites
-
Milner-White EJ. Situations of γ-turns in proteins. Their relation to α-helices, β-sheets and ligand binding sites. J Mol Biol 1990;216:386-397.
-
(1990)
J Mol Biol
, vol.216
, pp. 386-397
-
-
Milner-White, E.J.1
-
36
-
-
0029858390
-
The three-dimensional structure of bovine odorant binding protein and its mechanism of odor recognition
-
Bianchet MA, Bains G, Pelosi P, Pevsner J, Snyder SH, Monaco HL, Amzel LM. The three-dimensional structure of bovine odorant binding protein and its mechanism of odor recognition. Nat Struct Biol 1996;3:934-939.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 934-939
-
-
Bianchet, M.A.1
Bains, G.2
Pelosi, P.3
Pevsner, J.4
Snyder, S.H.5
Monaco, H.L.6
Amzel, L.M.7
-
37
-
-
33644807623
-
The structures of thrombospondin-1 N-terminal domain(TSPN- 1) and its complex with a synthetic pentameric heparin
-
Tan K, Duquette M, Liu J, Zhang R, Joachimiak A, Wang J, Lawler J. The structures of thrombospondin-1 N-terminal domain(TSPN- 1) and its complex with a synthetic pentameric heparin. Structure 2006;14:33-42.
-
(2006)
Structure
, vol.14
, pp. 33-42
-
-
Tan, K.1
Duquette, M.2
Liu, J.3
Zhang, R.4
Joachimiak, A.5
Wang, J.6
Lawler, J.7
-
38
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins 2002;46:197-205.
-
(2002)
Proteins
, vol.46
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
40
-
-
17644370992
-
Support vector machines for prediction and analysis of beta and gamma-turns in proteins
-
Pham TH, Satou K, Ho TB. Support vector machines for prediction and analysis of beta and gamma-turns in proteins. J Bioinform Comput Biol 2005;3:343-358.
-
(2005)
J Bioinform Comput Biol
, vol.3
, pp. 343-358
-
-
Pham, T.H.1
Satou, K.2
Ho, T.B.3
-
41
-
-
40649128753
-
New support vector-based design method for binary hierarchical classifiers for multi-class classification problems
-
Wang YC, Casasent D. New support vector-based design method for binary hierarchical classifiers for multi-class classification problems. Neural Netw 2008;21:502-510.
-
(2008)
Neural Netw
, vol.21
, pp. 502-510
-
-
Wang, Y.C.1
Casasent, D.2
-
42
-
-
35248832636
-
Gaussian processes: A method for automatic QSAR modeling of ADME properties
-
Obrezanova O, Csanyi G, Gola JM, Segall MD. Gaussian processes: a method for automatic QSAR modeling of ADME properties. J Chem Inf Model 2007;47:1847-1857.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 1847-1857
-
-
Obrezanova, O.1
Csanyi, G.2
Gola, J.M.3
Segall, M.D.4
-
43
-
-
33947380080
-
Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data
-
Zhao X, Cheung LW. Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data. BMC Bio- informatics 2007;8:67.
-
(2007)
BMC Bio- informatics
, vol.8
, pp. 67
-
-
Zhao, X.1
Cheung, L.W.2
|