-
1
-
-
0034327349
-
Prediction of tight turns and their types in proteins
-
Chou KG. Prediction of tight turns and their types in proteins. Anal Biochem 2000;286:1-16.
-
(2000)
Anal Biochem
, vol.286
, pp. 1-16
-
-
Chou, K.G.1
-
2
-
-
0028566270
-
A revised set of potentials for beta-turn formation in proteins
-
Hutchinson EG, Thornton JM. A revised set of potentials for beta-turn formation in proteins. Protein Sci 1994;3:2207-2216.
-
(1994)
Protein Sci
, vol.3
, pp. 2207-2216
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
3
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson JS. The anatomy and taxonomy of protein structure. Adv Protein Chem 1981;34:167-339.
-
(1981)
Adv Protein Chem
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
6
-
-
0037648871
-
Design of beta-turn based therapeutic agents
-
Kee KS, Jois SD. Design of beta-turn based therapeutic agents. Curr Pharm Des 2003;9:1209-1224.
-
(2003)
Curr Pharm Des
, vol.9
, pp. 1209-1224
-
-
Kee, K.S.1
Jois, S.D.2
-
7
-
-
0038502170
-
Folding dynamics and mechanism of beta-hairpin formation
-
Munoz V, Thompson PA, Hofrichter J, Eaton WA. Folding dynamics and mechanism of beta-hairpin formation. Nature 1997;390: 196-199.
-
(1997)
Nature
, vol.390
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
8
-
-
0034635340
-
Beta-Hairpin stability and folding: Molecular dynamics studies of the first beta-hairpin of tendamistat
-
Bonvin AM, van Gunsteren WF. beta-Hairpin stability and folding: molecular dynamics studies of the first beta-hairpin of tendamistat. J Mol Biol 2000;296:255-268.
-
(2000)
J Mol Biol
, vol.296
, pp. 255-268
-
-
Bonvin, A.M.1
Van Gunsteren, W.F.2
-
9
-
-
0015114095
-
Folding of polypeptide chains in proteins: A proposed mechanism for folding
-
Lewis PN, Momany FA, Scheraga HA. Folding of polypeptide chains in proteins: a proposed mechanism for folding. Proc Natl Acad Sci USA 1971;68:2293-2297.
-
(1971)
Proc Natl Acad Sci USA
, vol.68
, pp. 2293-2297
-
-
Lewis, P.N.1
Momany, F.A.2
Scheraga, H.A.3
-
10
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins
-
Chou PY, Fasman GD. Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins. Biochemistry 1974;13:211-222.
-
(1974)
Biochemistry
, vol.13
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
11
-
-
0015987426
-
Prediction of protein conformation
-
Chou PY, Fasman GD. Prediction of protein conformation. Biochemistry 1974;13:222-245.
-
(1974)
Biochemistry
, vol.13
, pp. 222-245
-
-
Chou, P.Y.1
Fasman, G.D.2
-
12
-
-
0017709445
-
Beta-turns in proteins
-
Chou PY, Fasman GD. Beta-turns in proteins. J Mol Biol 1977;115: 135-175.
-
(1977)
J Mol Biol
, vol.115
, pp. 135-175
-
-
Chou, P.Y.1
Fasman, G.D.2
-
13
-
-
0018476871
-
Prediction of beta-turns
-
Chou PY, Fasman GD. Prediction of beta-turns. Biophys J 1979;26: 367-373.
-
(1979)
Biophys J
, vol.26
, pp. 367-373
-
-
Chou, P.Y.1
Fasman, G.D.2
-
14
-
-
0017873321
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
Garnier J, Osguthorpe DJ, Robson B. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J Mol Biol 1978;120:97-120.
-
(1978)
J Mol Biol
, vol.120
, pp. 97-120
-
-
Garnier, J.1
Osguthorpe, D.J.2
Robson, B.3
-
15
-
-
0017798828
-
Prediction of chain turns in globular proteins on a hydrophobic basis
-
Rose GD. Prediction of chain turns in globular proteins on a hydrophobic basis. Nature 1978;272:586-590.
-
(1978)
Nature
, vol.272
, pp. 586-590
-
-
Rose, G.D.1
-
16
-
-
0024279235
-
Analysis and prediction of the different types of beta-turn in proteins
-
Wilmot CM, Thornton JM. Analysis and prediction of the different types of beta-turn in proteins. J Mol Biol 1988;203:221-232.
-
(1988)
J Mol Biol
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
17
-
-
0025113022
-
Beta-turns and their distortions: A proposed new nomenclature
-
Wilmot CM, Thornton JM. Beta-turns and their distortions: a proposed new nomenclature. Protein Eng 1990;3:479-493.
-
(1990)
Protein Eng
, vol.3
, pp. 479-493
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
18
-
-
0033752859
-
Beta- and gamma-turns in proteins revisited: A new set of amino acid turn-type dependent positional preferences and potentials
-
Guruprasad K, Rajkumar S. Beta- and gamma-turns in proteins revisited: a new set of amino acid turn-type dependent positional preferences and potentials. J Biosci 2000;25:143-156.
-
(2000)
J Biosci
, vol.25
, pp. 143-156
-
-
Guruprasad, K.1
Rajkumar, S.2
-
19
-
-
0031149431
-
Prediction of beta-turns in proteins by 1-4 and 2-3 correlation model
-
Zhang CT, Chou KC. Prediction of beta-turns in proteins by 1-4 and 2-3 correlation model. Biopolymers 1997;41:673-702.
-
(1997)
Biopolymers
, vol.41
, pp. 673-702
-
-
Zhang, C.T.1
Chou, K.C.2
-
20
-
-
0030808140
-
Classification and prediction of beta-turn types
-
Chou KC, Blinn JR. Classification and prediction of beta-turn types. J Protein Chem 1997;16:575-595.
-
(1997)
J Protein Chem
, vol.16
, pp. 575-595
-
-
Chou, K.C.1
Blinn, J.R.2
-
21
-
-
0030963006
-
Prediction of beta-turns
-
Chou KC. Prediction of beta-turns. J Pept Res 1997;49:120-144.
-
(1997)
J Pept Res
, vol.49
, pp. 120-144
-
-
Chou, K.C.1
-
22
-
-
0024412170
-
Prediction of beta-turns in proteins using neural networks
-
McGregor MJ, Flores TP, Sternberg MJ. Prediction of beta-turns in proteins using neural networks. Protein Eng 1989;2:521-526.
-
(1989)
Protein Eng
, vol.2
, pp. 521-526
-
-
McGregor, M.J.1
Flores, T.P.2
Sternberg, M.J.3
-
23
-
-
0032900496
-
Prediction of the location and type of beta-turns in proteins using neural networks
-
Shepherd AJ, Gorse D, Thornton JM. Prediction of the location and type of beta-turns in proteins using neural networks. Protein Sci 1999;8:1045-1055.
-
(1999)
Protein Sci
, vol.8
, pp. 1045-1055
-
-
Shepherd, A.J.1
Gorse, D.2
Thornton, J.M.3
-
24
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile-based neural networks
-
Rost B. PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol 1996;266:525-539.
-
(1996)
Methods Enzymol
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
25
-
-
0036855904
-
An evaluation of beta-turn prediction methods
-
Kaur H, Raghava GP. An evaluation of beta-turn prediction methods. Bioinformatics 2002;18:1508-1514.
-
(2002)
Bioinformatics
, vol.18
, pp. 1508-1514
-
-
Kaur, H.1
Raghava, G.P.2
-
26
-
-
0033933636
-
Cascaded multiple classifiers for secondary structure prediction
-
Ouali M, King RD. Cascaded multiple classifiers for secondary structure prediction. Protein Sci 2000;9:1162-1176.
-
(2000)
Protein Sci
, vol.9
, pp. 1162-1176
-
-
Ouali, M.1
King, R.D.2
-
27
-
-
0037372098
-
Prediction of beta-turns in proteins from multiple alignment using neural network
-
Kaur H, Raghava GP. Prediction of beta-turns in proteins from multiple alignment using neural network. Protein Sci 2003;12:627-634.
-
(2003)
Protein Sci
, vol.12
, pp. 627-634
-
-
Kaur, H.1
Raghava, G.P.2
-
28
-
-
0345832339
-
Protein beta-turn prediction using nearest-neighbor method
-
Kim S. Protein beta-turn prediction using nearest-neighbor method. Bioinformatics 2004;20:40-44.
-
(2004)
Bioinformatics
, vol.20
, pp. 40-44
-
-
Kim, S.1
-
29
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
30
-
-
0043207426
-
Prediction of beta-turns with learning machines
-
Cai YD, Liu XJ, Li YX, Xu XB, Chou KC. Prediction of beta-turns with learning machines. Peptides 2003;24:665-669.
-
(2003)
Peptides
, vol.24
, pp. 665-669
-
-
Cai, Y.D.1
Liu, X.J.2
Li, Y.X.3
Xu, X.B.4
Chou, K.C.5
-
31
-
-
8844252295
-
A neural network method for prediction of beta-turn types in proteins using evolutionary information
-
Kaur KS, Raghava GP. A neural network method for prediction of beta-turn types in proteins using evolutionary information. Bioinformatics 2004;16:2751-2758.
-
(2004)
Bioinformatics
, vol.16
, pp. 2751-2758
-
-
Kaur, K.S.1
Raghava, G.P.2
-
33
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm U, Sander C. Enlarged representative set of protein structures. Protein Sci 1994;3:522-524.
-
(1994)
Protein Sci
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
34
-
-
0030039296
-
PROMOTIF - A program to identify and analyze structural motifs in proteins
-
Hutchinson EG, Thornton JM. PROMOTIF - a program to identify and analyze structural motifs in proteins. Protein Sci 1996;5: 212-220.
-
(1996)
Protein Sci
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
35
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
37
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
Pollastri G, Przybylski D, Rost B, Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 2002;47:228-235.
-
(2002)
Proteins
, vol.47
, pp. 228-235
-
-
Pollastri, G.1
Przybylski, D.2
Rost, B.3
Baldi, P.4
-
38
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: An overview
-
Baldi P, Brunak S, Chauvin Y, Andersen CA, Nielsen H. Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 2000;16:412-424.
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
-
39
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Mathews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975;405:442-451.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Mathews, B.W.1
-
40
-
-
2942541294
-
Use of a structural alphabet for analysis of short loops connecting repetitive structures
-
Fourrier L, Benros C, de Brevern AG. Use of a structural alphabet for analysis of short loops connecting repetitive structures. BMC Bioinformatics 2004;5:58.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 58
-
-
Fourrier, L.1
Benros, C.2
De Brevern, A.G.3
-
41
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost B, Sander C. Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol 1993;232:584-599.
-
(1993)
J Mol Biol
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
42
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins 2002;46:197-205.
-
(2002)
Proteins
, vol.46
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
43
-
-
1442349113
-
Prediction of alpha-turns in proteins using PSI-BLAST profiles and secondary structure information
-
Kaur H, Raghava GP. Prediction of alpha-turns in proteins using PSI-BLAST profiles and secondary structure information. Proteins 2004;55:83-90.
-
(2004)
Proteins
, vol.55
, pp. 83-90
-
-
Kaur, H.1
Raghava, G.P.2
|