Analysis of functions in plasmid pHZ1358 influencing its genetic and structural stability in Streptomyces lividans 1326

Applied Microbiology and Biotechnology

Volumn 82, Issue 2, 2009, Pages 303-310

  Sun, Yuhui ^a,b   He, Xinyi ^a   Liang, Jingdan ^a   Zhou, Xiufen ^a   Deng, Zixin ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Gene replacements; PHZ1358; PIJ101; Streptomyces lividans

Indexed keywords

COPY NUMBERS; GENE DISRUPTIONS; GENE REPLACEMENTS; PHZ1358; PIJ101; POINT MUTATIONS; REP GENES; REPLICATION PROTEINS; STREPTOMYCES LIVIDANS; STRUCTURAL INSTABILITIES; STRUCTURAL STABILITIES;

DNA; ESCHERICHIA COLI; GENES; NUCLEIC ACIDS; ORGANIC ACIDS; STABILITY;

GENE ENCODING;

BACTERIUM; DNA; EXPERIMENTAL STUDY; GENE; GENETIC ANALYSIS; MUTATION; PLASMID; PROTEIN;

ESCHERICHIA COLI; GENETIC VECTORS; MOLECULAR SEQUENCE DATA; PLASMIDS; RECOMBINATION, GENETIC; SEQUENCE DELETION; STREPTOMYCES LIVIDANS;

ESCHERICHIA COLI; STREPTOMYCES; STREPTOMYCES LIVIDANS;

EID: 59449108190     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1793-7     Document Type: Article

References (27)

1. SF Altschul TL Madden AA Schaffer JH Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. SF Altschul EV Koonin 1998 Iterated profile searches with PSI-BLAST-a tool for discovery in protein databases Trends Biochem Sci 23 444 447
3. LQ Bai L Li H Xu K Minagawa Y Yu Y Zhang X Zhou HG Floss T Mahmud Z Deng 2006 Functional analysis of the validamycin biosynthetic gene cluster and engineered production of validoxylamine A Chem Biol 13 387 397
4. M Bierman R Logan K Obrien ET Seno RN Rao BE Schoner 1992 Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp Gene 116 43 49
5. S Chen X Huang XF Zhou LQ Bai J He KJ Jeong SY Lee ZX Deng 2003 Organizational and mutational analysis of a complete FR-008/candicidin gene cluster encoding a structurally related polyene complex Chem Biol 10 1065 1076
6. ZX Deng T Kieser DA Hopwood 1988 "Strong incompatibility" between derivatives of the Streptomyces multi-copy plasmid pIJ101 Mol Gen Genet 214 286 294
7. B Ewing L Hillier MC Wendl P Green 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 8 175 185
8. D Gordon C Abajian P Green 1998 Consed: a graphical tool for sequence finishing Genome Res 8 195 202
9. D Hanahan 1983 Studies on transformation of Escherichia coli with plasmids J Mol Biol 166 557 580
10. BM Harvey T Mironenko YH Sun H Hong ZX Deng PF Leadlay KJ Weissman SF Haydock 2007 Insights into polyether biosynthesis from analysis of the nigericin biosynthetic gene cluster in Streptomyces sp. DSM4137 Chem Biol 14 703 714
11. XY He HY Ou Q Yu XF Zhou J Wu JD Liang W Zhang K Rajakumar ZX Deng 2007 Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria Mol Microbiol 65 1034 1048
12. ZH Hu K Bao XF Zhou Q Zhou DA Hopwood T Kieser ZX Deng 1994 Repeated polyketide synthase modules involved in the biosynthesis of a heptaene macrolide by Streptomyces sp. FR-008 Mol Microbiol 14 163 172
13. J Ishikawa K Hotta 1999 FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G plus C content FEMS Microbiol Lett 174 251 253
14. E Katz CJ Thompson DA Hopwood 1983 Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans J Gen Microbiol 129 2703 2714
15. KJ Kendall SN Cohen 1988 Complete nucleotide-sequence of the Streptomyces lividans plasmid pIJ101 and correlation of the sequence with genetic properties J Bacteriol 170 4634 4651
16. T Kieser DA Hopwood HM Wright CJ Thompson 1982 pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors Mol Gen Genet 185 223 238
17. Kieser T, Bibb MJ, Chater KF, Butter MJ, Hopwood DA (2000) Practical Streptomyces genetics: a laboratory manual. John Innes Foundation, Norwich, UK
18. J Liang Z Wang X He J Li X Zhou Z Deng 2007 DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites Nucleic Acids Res 35 2944 2954
19. DJ MacNeil KM Gewain CL Ruby G Dezeny PH Gibbons T MacNeil 1992 Analysis of Streptomyces avermitilis genes required for avermectin biosynthesis utilizing a novel integration vector Gene 111 61 68
20. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
21. AA Schaffer L Aravind TL Madden S Shavirin JL Spouge YI Wolf EV Koonin SF Altschul 2001 Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements Nucleic Acids Res 29 2994 3005
22. YH Sun XF Zhou J Liu K Bao GM Zhang GQ Tu T Kieser ZX Deng 2002 'Streptomyces nanchangensis', a producer of the insecticidal polyether antibiotic nanchangmycin and the antiparasitic macrolide meilingmycin, contains multiple polyketide gene clusters Microbiology 148 361 371
23. YH Sun H Hong M Samborskyy T Mironenko PF Leadlay SF Haydock 2006 Organization of the biosynthetic gene cluster in Streptomyces sp. DSM 4137 for the novel neuroprotectant polyketide meridamycin Microbiology 152 3507 3515
24. LR Wang S Chen TG Xu K Taghizadeh JS Wishnok XF Zhou DL You ZX Deng PC Dedon 2007 Phosphorothioation of DNA in bacteria by dnd genes Nat Chem Biol 3 709 710
25. JM Weber JO Leung GT Maine RHB Potenz TJ Paulus JP Dewitt 1990 Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea J Bacteriol 172 2372 2383
26. XF Zhou XY He AY Li F Lei T Kieser ZX Deng 2004 Streptomyces coelicolor A3(2) lacks a genomic island present in the chromosome of Streptomyces lividans 66 Appl Environ Microbiol 70 7110 7118
27. XF Zhou XY He JD Liang AY Li TG Xu T Kieser JD Helmann ZX Deng 2005 A novel DNA modification by sulphur Mol Microbiol 57 1428 1438