Lineage-specific diversification of killer cell Ig-like receptors in the owl monkey, a New World primate

Immunogenetics

Volumn 61, Issue 1, 2009, Pages 27-41

  Cadavid, Luis F ^a   Lun, Cheng Man ^b  

^a UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^b UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

Aotus; Evolution; KIR

Indexed keywords

COMPLEMENTARY DNA; FC RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; MEMBRANE RECEPTOR;

ANIMAL CELL; AOTUS; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CELL LINEAGE; CLONE; CONTROLLED STUDY; EVOLUTION; EXON; GENE FREQUENCY; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC MODEL; HAPLOTYPE; INTRON; LIGAND BINDING; MALE; MONOPHYLY; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RETROPOSON; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; AOTIDAE; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CODON, NONSENSE; CONSENSUS SEQUENCE; CONTIG MAPPING; EVOLUTION, MOLECULAR; EXONS; GENE LIBRARY; HAPLOTYPES; HUMANS; LIGANDS; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PRIMATES; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, KIR; RECOMBINATION, GENETIC; RETROELEMENTS; SELECTION (GENETICS); SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY;

AOTUS (PRIMATE); AOTUS TRIVIRGATUS; BACTERIA (MICROORGANISMS); PRIMATES;

EID: 59449099640     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-008-0342-y     Document Type: Article

References (33)

1. L Abi-Rached P Parham 2005 Natural selection drives recurrent formation of activating killer cell immunoglobulin-like receptor and Ly49 from inhibitory homologues J Exp Med 201 1319 1332
2. EJ Adams P Parham 2001 Species-specific evolution of MHC class I genes in the higher primates Immunol Rev 183 41 64
3. H Arase LL Lanier 2004 Specific recognition of virus-infected cells by paired NK receptors Rev Med Virol 14 83 93
4. Å Björklund D Ekman A Elofsson 2006 Expansion of protein domain repeats PLOS Comput Biol 2 e114
5. LF Cadavid AL Hughes DI Watkins 1996 MHC class I-processed pseudogene in New World primates provide evidence for rapid turnover of MHC class I genes J Immunol 157 2403 2409
6. LF Cadavid BE Mejia DI Watkins 1999 MHC class I genes in a New World primate, the cotton-top tamarin (Saguinus oedipus), have evolved by an active process of lici turnover Immunogenetics 49 196 205
7. LF Cadavid C Shufflebotham FJ Ruiz M Yeager AL Hughes DI Watkins 1997 Evolutionary instability of the MHC class I loci in New World primates Proc Natl Acad Sci USA 94 14536 14541
8. PP Cárdenas CF Suárez P Martínez ME Patarroyo MA Patarroyo 2005 MHC class I genes in the owl monkey: mosaic organisation, convergence and loci diversity Immunogenetics 56 818 832
9. M Faure EO Long 2002 KIR2DL4 (CD158d), an NK cell-activating receptor with inhibitory potential J Immunol 168 6208 6214
10. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 738 791
11. LA Guethlein L Abi-Rached JA Hammond P Parham 2007 The expanded cattle KIR genes are orthologous to the conserved single-copy KIR3DX1 gene of primates Immunogenetics 59 517 522
12. KL Hershberger R Shyam A Miura NL Letvin 2001 Diversity of the killer cell Ig-like receptors of rhesus monkeys J Immunol 166 4380 4390
13. SI Khakoo R Geller S Shin JA Jenkins P Parham 2002 The D0 domain of KIR3D acts as a major histocompatibility clomplex class I binding enhancer J Exp Med 196 911 921
14. M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120
15. M Liu H Walch S Wu A Grigoriec 2005 Significant expansion of exon bordering protein domains during animal proteome evolution Nucleic Acids Res 33 95 105
16. H-G Ljunggren K Karre 1990 In search of the missing self: MHC molecules and NK cell recognition Immunol Today 11 237 244
17. L Moretta A Moretta 2003 Unravelling natural killer cell function: triggering and inhibitory human NK receptors EMBO J 23 255 259
18. K Natarajan N Dimasi J Wang RA Mariuzza DH Margulies 2002 Structure and function of natural killer cell receptors: Multiple molecular solutions to self, nonself discrimination Annu Rev Immunol 20 853 885
19. M Nei T Gojobori 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous substitutions Mol Biol Evol 3 418 426
20. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, Oxford
21. L Patthy 1999 Genome evolution and the evolution of exon-shuffling-a review Gene 238 103 114
22. S Rajagopalan EO Long 1999 A human histocompatibility leukocyte antigen (HLA)-G-specific receptor expressed on all natural killer cells J Exp Med 189 1093 1100
23. R Rajalingam P Parham L Abi-Rached 2004 Domain shuffling has been the main mechanism forming new hominoid killer cell Ig-like receptors J Immunol 172 356 369
24. N Saitou M Nei 1987 The neighbor joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
25. JG Sambrook A Bashirova H Andersen M Piatak GS Vernikos P Coggill JD Lifson M Carrington S Beck 2006 Identification of the ancestral killer immunoglobulin-like receptor gene in primates BMC Genomics 7 209 216
26. JG Sambrook A Bashirova S Palmer S Sims J Trowsdale L Abi-Rached P Parham M Carrington S Beck 2005 Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates Genome Res 15 25 35
27. JG Sambrook S Beck 2007 Evolutionary vignettes of natural killer cell receptors Curr Opin Immunol 19 553 560
28. H Schneider MPC Schneider I Sampaio ML Harada M Stanhope J Czelusniak M Goodman 1993 Molecular phylogeny of the New World monkeys (Platyrrhini, Primates) Mol Phy Evol 2 225 242
29. MR Snyder T Nakajima PJ Leibson CM Weyand JJ Goronzy 2004 Stimulatory killer Ig-like receptors modulate T cell activation through DAP12-dependent and DAP12-indepenent mechanisms J Immunol 173 3725 3731
30. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
31. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
32. J Trowsdale R Barten A Haude CA Stewart S Beck MJ Wilson 2001 The genomic context of natural killer receptor extended gene families Immunol Rev 181 20 38
33. C Vilches P Parham 2002 KIR: diverse, rapidly evolving receptors of innate and adaptive immunity Annu Rev Immunol 20 217 251