-
1
-
-
34547120236
-
Structure of amidase from Pseudomonas aeruginosa showing a trapped acyl transfer reaction intermediate state
-
J Andrade A Karmali MA Carrondo C Frazão 2007 Structure of amidase from Pseudomonas aeruginosa showing a trapped acyl transfer reaction intermediate state J Biol Chem 282 19598 19605
-
(2007)
J Biol Chem
, vol.282
, pp. 19598-19605
-
-
Andrade, J.1
Karmali, A.2
Carrondo, M.A.3
Frazão, C.4
-
3
-
-
33746052881
-
The current and future applications of microorganism in the bioremediation of cyanide contamination
-
J Baxter SP Cummings 2006 The current and future applications of microorganism in the bioremediation of cyanide contamination Antonie Van Leeuwenhoek 90 1 17
-
(2006)
Antonie Van Leeuwenhoek
, vol.90
, pp. 1-17
-
-
Baxter, J.1
Cummings, S.P.2
-
4
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependant rotamer library: A new homology modeling tool
-
JM Bower FE Cohen RL Dunbrack Jr 1997 Prediction of protein side-chain rotamers from a backbone-dependant rotamer library: a new homology modeling tool J Mol Biol 267 1268 1282
-
(1997)
J Mol Biol
, vol.267
, pp. 1268-1282
-
-
Bower, J.M.1
Cohen, F.E.2
Dunbrack Jr, R.L.3
-
5
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
M Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.1
-
6
-
-
0036909261
-
Catalysis in the nitrilase superfamily
-
C Brenner 2002 Catalysis in the nitrilase superfamily Curr Opin Struct Biol 12 775 782
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 775-782
-
-
Brenner, C.1
-
7
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
P Chacón W Wriggers 2002 Multi-resolution contour-based fitting of macromolecular structures J Mol Biol 317 375 384
-
(2002)
J Mol Biol
, vol.317
, pp. 375-384
-
-
Chacón, P.1
Wriggers, W.2
-
8
-
-
0001679473
-
ALIGN: A program to superimpose protein coordinates, accounting for insertions and deletions
-
GH Cohen 1997 ALIGN: a program to superimpose protein coordinates, accounting for insertions and deletions J Appl Crystall 30 1160 1161
-
(1997)
J Appl Crystall
, vol.30
, pp. 1160-1161
-
-
Cohen, G.H.1
-
9
-
-
0034564239
-
A robust algorithm for the reconstruction of helical filaments using single-particle methods
-
EH Egelman 2000 A robust algorithm for the reconstruction of helical filaments using single-particle methods Ultramicroscopy 85 225 234
-
(2000)
Ultramicroscopy
, vol.85
, pp. 225-234
-
-
Egelman, E.H.1
-
10
-
-
0347383758
-
MODELLER: Generation and refinement of homology-based protein structure models
-
A Fiser A Sali 2003 MODELLER: generation and refinement of homology-based protein structure models Methods Enzymol 374 463 493
-
(2003)
Methods Enzymol
, vol.374
, pp. 463-493
-
-
Fiser, A.1
Sali, A.2
-
11
-
-
0001277781
-
Colorimetric determination of cyanide in stack gas and waste water
-
FB Fisher JS Brown 1952 Colorimetric determination of cyanide in stack gas and waste water Anal Chem 24 1440 1444
-
(1952)
Anal Chem
, vol.24
, pp. 1440-1444
-
-
Fisher, F.B.1
Brown, J.S.2
-
13
-
-
34249671722
-
Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
-
CL Hung JH Liu WC Chiu SW Huang JK Hwang W-C Wang 2007 Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad J Biol Chem 282 12220 12229
-
(2007)
J Biol Chem
, vol.282
, pp. 12220-12229
-
-
Hung, C.L.1
Liu, J.H.2
Chiu, W.C.3
Huang, S.W.4
Hwang, J.K.5
Wang, W.-C.6
-
14
-
-
0041528198
-
Cyn D, the cyanide dihydratase from Bacillus pumillus: Gene cloning and structural studies
-
D Jandhyala M Berman PR Meyers BT Sewell RC Willson MJ Benedik 2003 Cyn D, the cyanide dihydratase from Bacillus pumillus: gene cloning and structural studies Appl Environ Microbiol 69 4794 4805
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4794-4805
-
-
Jandhyala, D.1
Berman, M.2
Meyers, P.R.3
Sewell, B.T.4
Willson, R.C.5
Benedik, M.J.6
-
16
-
-
0033537993
-
GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
-
DT Jones 1999 GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences J Mol Biol 287 797 815
-
(1999)
J Mol Biol
, vol.287
, pp. 797-815
-
-
Jones, D.T.1
-
17
-
-
34748851907
-
The crystal structure of an aliphatic amidase from Geobacillus pallidus RAPc8: Evidence for a fourth nitrilase catalytic residue
-
SW Kimani VB Agarkar DA Cowan MF-R Sayed BT Sewell 2007 The crystal structure of an aliphatic amidase from Geobacillus pallidus RAPc8: evidence for a fourth nitrilase catalytic residue Acta Crystallogr D63 1048 1058
-
(2007)
Acta Crystallogr
, vol.63
, pp. 1048-1058
-
-
Kimani, S.W.1
Agarkar, V.B.2
Cowan, D.A.3
Mf-R, S.4
Sewell, B.T.5
-
18
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
UK Laemmli 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680 685
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
19
-
-
0033377664
-
EMAN: Semi-automated software for high-resolution single particle reconstructions
-
SJ Ludtke PR Baldwin W Chiu 1999 EMAN: semi-automated software for high-resolution single particle reconstructions J Struct Biol 128 82 96
-
(1999)
J Struct Biol
, vol.128
, pp. 82-96
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
20
-
-
40849116037
-
The crystal structure of β-alanine synthase from Drosophila melanogaster reveals a homoactameric helical turn-like assembly
-
S Lundgren B Lohkamp B Andersen J Piskur D Dobritzsch 2008 The crystal structure of β-alanine synthase from Drosophila melanogaster reveals a homoactameric helical turn-like assembly J Mol Biol 377 1544 1559
-
(2008)
J Mol Biol
, vol.377
, pp. 1544-1559
-
-
Lundgren, S.1
Lohkamp, B.2
Andersen, B.3
Piskur, J.4
Dobritzsch, D.5
-
21
-
-
0019887666
-
The symmetries of filamentous phage particles
-
L Makowski DLD Caspar 1980 The symmetries of filamentous phage particles J Mol Biol 145 611 617
-
(1980)
J Mol Biol
, vol.145
, pp. 611-617
-
-
Makowski, L.1
Caspar, D.L.D.2
-
22
-
-
0038634975
-
Improvement of the GenTHREADER method for genomic fold recognition
-
LJ McGuffin DT Jones 2003 Improvement of the GenTHREADER method for genomic fold recognition Bioinformatics 19 874 881
-
(2003)
Bioinformatics
, vol.19
, pp. 874-881
-
-
McGuffin, L.J.1
Jones, D.T.2
-
23
-
-
33646566871
-
Cloning, overexpression, and characterization of a thermoactive nitrilase from the hyperthermophilic archaeon Pyrococcus abyssi
-
P Mueller K Egorova CE Vorgias E Boutou H Trauthwein S Verseck G Antranikian 2006 Cloning, overexpression, and characterization of a thermoactive nitrilase from the hyperthermophilic archaeon Pyrococcus abyssi Protein Expr Purif 47 672 681
-
(2006)
Protein Expr Purif
, vol.47
, pp. 672-681
-
-
Mueller, P.1
Egorova, K.2
Vorgias, C.E.3
Boutou, E.4
Trauthwein, H.5
Verseck, S.6
Antranikian, G.7
-
25
-
-
18144440218
-
Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases
-
T Nakai T Hasegawa E Yamashita M Yamamoto T Kumasaka T Ueki H Nanba Y Ikenaka S Takahashi M Sato T Tsukihara 2000 Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases Structure 8 729 737
-
(2000)
Structure
, vol.8
, pp. 729-737
-
-
Nakai, T.1
Hasegawa, T.2
Yamashita, E.3
Yamamoto, M.4
Kumasaka, T.5
Ueki, T.6
Nanba, H.7
Ikenaka, Y.8
Takahashi, S.9
Sato, M.10
Tsukihara, T.11
-
26
-
-
0345167149
-
The nitrilases family of CN hydrolyzing enzymes-a comparative study
-
C O'Reilly PD Turner 2003 The nitrilases family of CN hydrolyzing enzymes-a comparative study J Appl Microbiol 95 1161 1174
-
(2003)
J Appl Microbiol
, vol.95
, pp. 1161-1174
-
-
O'Reilly, C.1
Turner, P.D.2
-
27
-
-
0035114118
-
The nitrilase superfamily: Classification, structure and function
-
1
-
HC Pace C Brenner 2001 The nitrilase superfamily: classification, structure and function Genome Biol 2 1 REVIEWS0001
-
(2001)
Genome Biol
, vol.2
, pp. 0001
-
-
Pace, H.C.1
Brenner, C.2
-
30
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
A Sali TL Blundell 1993 Comparative protein modelling by satisfaction of spatial restraints J Mol Biol 234 779 815
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
31
-
-
0242542014
-
The cyanide degrading nitrilase from Pseudomonas stutzeri AK61 is a two-fold symmetric, 14-subunit spiral
-
BT Sewell MN Berman PR Meyers D Jandhyala M Benedik 2003 The cyanide degrading nitrilase from Pseudomonas stutzeri AK61 is a two-fold symmetric, 14-subunit spiral Structure 11 1 20
-
(2003)
Structure
, vol.11
, pp. 1-20
-
-
Sewell, B.T.1
Berman, M.N.2
Meyers, P.R.3
Jandhyala, D.4
Benedik, M.5
-
32
-
-
29744451511
-
The oligomeric structure of nitrilases: The effect of mutating interfacial residues on activity
-
BT Sewell RN Thuku X Zhang M Benedik 2005 The oligomeric structure of nitrilases: the effect of mutating interfacial residues on activity Ann NY Acad Sci 1056 153 159
-
(2005)
Ann NY Acad Sci
, vol.1056
, pp. 153-159
-
-
Sewell, B.T.1
Thuku, R.N.2
Zhang, X.3
Benedik, M.4
-
34
-
-
34247144173
-
Post-translational cleavage of recombinantly expressed nitrilase from Rhodococcus rhodochrous J1 yields a stable, active helical form
-
RN Thuku BW Weber A Varsani BT Sewell 2007 Post-translational cleavage of recombinantly expressed nitrilase from Rhodococcus rhodochrous J1 yields a stable, active helical form FEBS J 274 2099 2018
-
(2007)
FEBS J
, vol.274
, pp. 2099-2018
-
-
Thuku, R.N.1
Weber, B.W.2
Varsani, A.3
Sewell, B.T.4
-
35
-
-
0035895433
-
Crystal structure and site-directed mutagenesis studies of N-Carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft
-
W Wang W Hsu F Chien C Chen 2001 Crystal structure and site-directed mutagenesis studies of N-Carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft J Mol Biol 306 251 261
-
(2001)
J Mol Biol
, vol.306
, pp. 251-261
-
-
Wang, W.1
Hsu, W.2
Chien, F.3
Chen, C.4
-
36
-
-
33745860367
-
Structural polymorphism in bacterial EspA filaments revealed by Cryo-EM and an improved approach to helical reconstruction
-
YA Wang X Yu C Yip NC Strynadka EH Egelman 2006 Structural polymorphism in bacterial EspA filaments revealed by Cryo-EM and an improved approach to helical reconstruction Structure 14 1 8
-
(2006)
Structure
, vol.14
, pp. 1-8
-
-
Wang, Y.A.1
Yu, X.2
Yip, C.3
Strynadka, N.C.4
Egelman, E.H.5
-
38
-
-
0345414561
-
Issues of resolution and polymorphism in single-particle reconstruction
-
S Yang X Yu VE Galkin EH Egelman 2003 Issues of resolution and polymorphism in single-particle reconstruction J Struct Biol 144 162 171
-
(2003)
J Struct Biol
, vol.144
, pp. 162-171
-
-
Yang, S.1
Yu, X.2
Galkin, V.E.3
Egelman, E.H.4
|