Comparison of correspondence analysis methods for synonymous codon usage in bacteria

DNA Research

Volumn 15, Issue 6, 2008, Pages 357-365

  Suzuki, Haruo ^a   Brown, Celeste J ^a   Forney, Larry J ^a   Top, Eva M ^a  

^a UNIVERSITY OF IDAHO   (United States)

Author keywords

Correspondence analysis; Horizontal gene transfer; Strand specific mutational bias; Synonymous codon usage; Translational selection

Indexed keywords

ABSOLUTE CODON FREQUENCY; ARTICLE; BACTERIAL GENOME; BORRELIA BURGDORFERI; CHLAMYDIA TRACHOMATIS; CLOSTRIDIUM PERFRINGENS; CODON USAGE; CORRESPONDENCE ANALYSIS; ESCHERICHIA COLI; EVALUATION; GENE SEQUENCE; HAEMOPHILUS INFLUENZAE; HELICOBACTER PYLORI; HORIZONTAL GENE TRANSFER; INTERMETHOD COMPARISON; MYCOPLASMA GENITALIUM; NONHUMAN; RELATIVE CODON FREQUENCY; RELATIVE SYNONYMOUS CODON USAGE; RICKETTSIA PROWAZEKII; SEQUENCE ANALYSIS; THERMOTOGA MARITIMA; TREPONEMA PALLIDUM; WITHIN GROUP CORRESPONDENCE ANALYSIS; BACTERIAL GENE; BACTERIUM; CLASSIFICATION; CODON; COMPARATIVE STUDY; DNA BASE COMPOSITION; GENE EXPRESSION REGULATION; GENETIC CODE; GENETIC PROCEDURES; GENETICS;

BACTERIA (MICROORGANISMS); RICKETTSIA PROWAZEKII;

BACTERIA; BASE COMPOSITION; CODON; GENE EXPRESSION REGULATION, BACTERIAL; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; GENETIC CODE; GENETIC TECHNIQUES; GENOME, BACTERIAL; RICKETTSIA PROWAZEKII;

EID: 59149091773     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsn028     Document Type: Article

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