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Volumn 4, Issue 1, 2009, Pages 45-53

The complete mitochondrial genomes of the yellowleg shrimp Farfantepenaeus californiensis and the blue shrimp Litopenaeus stylirostris (Crustacea: Decapoda)

Author keywords

Crustacean; Farfantepenaeus californiensis; Litopenaeus stylirostris; Mitochondrial genome; Penaeidae; Phylogenetic; Shrimp

Indexed keywords

DNA FRAGMENT; MITOCHONDRIAL DNA; TRANSFER RNA;

EID: 59049099288     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2008.10.003     Document Type: Article
Times cited : (17)

References (48)
  • 3
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 4
    • 19944400426 scopus 로고    scopus 로고
    • Sequencing and comparing whole mitochondrial genomes of animals
    • Boore J.L., Macey J.R., and Medina M. Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 395 (2005) 311-348
    • (2005) Methods Enzymol. , vol.395 , pp. 311-348
    • Boore, J.L.1    Macey, J.R.2    Medina, M.3
  • 5
    • 0024351697 scopus 로고
    • Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy
    • Boyce T.M., Zwick M.E., and Aquadro C.F. Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 123 (1989) 825-836
    • (1989) Genetics , vol.123 , pp. 825-836
    • Boyce, T.M.1    Zwick, M.E.2    Aquadro, C.F.3
  • 6
    • 43949160320 scopus 로고
    • Branch support and tree stability
    • Bremer K. Branch support and tree stability. Cladistics 10 (1994) 295-304
    • (1994) Cladistics , vol.10 , pp. 295-304
    • Bremer, K.1
  • 7
    • 0022271984 scopus 로고
    • The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code
    • Clary D.O., and Wolstenholme D.R. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. J. Mol. Evol. 22 (1985) 252-271
    • (1985) J. Mol. Evol. , vol.22 , pp. 252-271
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 8
    • 25444436951 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the stomatopod crustacean Squilla mantis
    • Cook C.E. The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC Genomics 6 (2005) 105
    • (2005) BMC Genomics , vol.6 , pp. 105
    • Cook, C.E.1
  • 9
    • 0032783979 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea)
    • Crease T.J. The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea). Gene 233 (1999) 89-99
    • (1999) Gene , vol.233 , pp. 89-99
    • Crease, T.J.1
  • 10
    • 0033662936 scopus 로고    scopus 로고
    • Genetic structure of two commercial penaeids (Penaeus californiensis and P. stylirostris) from the Gulf of California, as revealed by allozyme variation
    • de la Rosa-Vélez J., Escobar-Fernández R., Correa F., Maqueda-Cornejo M., and de la Torre-Cueto J. Genetic structure of two commercial penaeids (Penaeus californiensis and P. stylirostris) from the Gulf of California, as revealed by allozyme variation. Fish. Bull. 98 (2000) 674-683
    • (2000) Fish. Bull. , vol.98 , pp. 674-683
    • de la Rosa-Vélez, J.1    Escobar-Fernández, R.2    Correa, F.3    Maqueda-Cornejo, M.4    de la Torre-Cueto, J.5
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 34248213649 scopus 로고    scopus 로고
    • Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian corals
    • Fukami H., Chen C.A., Chiou C.Y., and Knowlton N. Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian corals. J. Mol. Evol. 64 (2007) 591-600
    • (2007) J. Mol. Evol. , vol.64 , pp. 591-600
    • Fukami, H.1    Chen, C.A.2    Chiou, C.Y.3    Knowlton, N.4
  • 14
    • 0036658871 scopus 로고    scopus 로고
    • Sequence and conservation of a rRNA and tRNAVal mitochondrial gene fragment from Penaeus californiensis and comparison with Penaeus vannamei and Penaeus stylirostris
    • Gutiérrez-Millán L.E., Peregrino-Uriarte A.B., Sotelo-Mundo R., Vargas-Albores F., and Yepiz-Plascencia G. Sequence and conservation of a rRNA and tRNAVal mitochondrial gene fragment from Penaeus californiensis and comparison with Penaeus vannamei and Penaeus stylirostris. Mar. Biotechnol. 4 (2002) 392-398
    • (2002) Mar. Biotechnol. , vol.4 , pp. 392-398
    • Gutiérrez-Millán, L.E.1    Peregrino-Uriarte, A.B.2    Sotelo-Mundo, R.3    Vargas-Albores, F.4    Yepiz-Plascencia, G.5
  • 15
    • 0034079347 scopus 로고    scopus 로고
    • Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura)
    • Hickerson M.C., and Cunningham C.W. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol. Biol. Evol. 17 (2000) 639-644
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 639-644
    • Hickerson, M.C.1    Cunningham, C.W.2
  • 16
    • 0034979888 scopus 로고    scopus 로고
    • One-step PCR amplification of complete arthropod mitochondrial genomes
    • Hwang U.W., Park C.J., Yong T.S., and Kim W. One-step PCR amplification of complete arthropod mitochondrial genomes. Mol. Phylogenet. Evol. 19 (2001) 345-352
    • (2001) Mol. Phylogenet. Evol. , vol.19 , pp. 345-352
    • Hwang, U.W.1    Park, C.J.2    Yong, T.S.3    Kim, W.4
  • 17
    • 0030811686 scopus 로고    scopus 로고
    • Nucleotide sequence divergence in the A + T-rich region of mitochondrial DNA in Drosophila simulans and D. mauritiana
    • Inohira K., Hara T., and Maatsura E.T. Nucleotide sequence divergence in the A + T-rich region of mitochondrial DNA in Drosophila simulans and D. mauritiana. Mol. Biol. Evol. 14 (1997) 814-822
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 814-822
    • Inohira, K.1    Hara, T.2    Maatsura, E.T.3
  • 18
    • 34247097942 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae)
    • Ivey J.L., and Santos S.R. The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae). Gene 394 (2007) 35-44
    • (2007) Gene , vol.394 , pp. 35-44
    • Ivey, J.L.1    Santos, S.R.2
  • 19
    • 33749426647 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
    • Kilpert F., and Podsiadlowski L. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics 7 (2006) 241
    • (2006) BMC Genomics , vol.7 , pp. 241
    • Kilpert, F.1    Podsiadlowski, L.2
  • 20
    • 0033367329 scopus 로고    scopus 로고
    • Mitochondrial genome evolution and the origin of eukariotes
    • Lang B.F., Gray M.W., and Burger G. Mitochondrial genome evolution and the origin of eukariotes. Annu. Rev. Genet. 33 (1999) 351-397
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 351-397
    • Lang, B.F.1    Gray, M.W.2    Burger, G.3
  • 21
    • 1642405475 scopus 로고    scopus 로고
    • Phylogenetic relationships and evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA
    • Lavery S., Chan T.Y., Tam Y.K., and Chu K. Phylogenetic relationships and evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA. Mol. Phylogenet. Evol. 31 (2004) 39-49
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 39-49
    • Lavery, S.1    Chan, T.Y.2    Tam, Y.K.3    Chu, K.4
  • 22
    • 0029411512 scopus 로고
    • Drosophila melanogaster mitochondrial DNA: completion of the nucleotide sequence and evolutionary comparisons
    • Lewis O.L., Farr C.L., and Kaguni L.S. Drosophila melanogaster mitochondrial DNA: completion of the nucleotide sequence and evolutionary comparisons. Insect Mol. Biol. 4 (1995) 263-278
    • (1995) Insect Mol. Biol. , vol.4 , pp. 263-278
    • Lewis, O.L.1    Farr, C.L.2    Kaguni, L.S.3
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequences
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequences. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 0035147624 scopus 로고    scopus 로고
    • Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences
    • Maggioni R., Rogers A.D., Maclean N., and D'Incao F. Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences. Mol. Phylogenet. Evol. 18 (2001) 66-73
    • (2001) Mol. Phylogenet. Evol. , vol.18 , pp. 66-73
    • Maggioni, R.1    Rogers, A.D.2    Maclean, N.3    D'Incao, F.4
  • 25
    • 24144464820 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae)
    • Miller A.D., Murphy N.P., Burridge C.P., and Austin C.M. Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae). Mar. Biotechnol. 7 (2005) 339-349
    • (2005) Mar. Biotechnol. , vol.7 , pp. 339-349
    • Miller, A.D.1    Murphy, N.P.2    Burridge, C.P.3    Austin, C.M.4
  • 26
    • 0019444843 scopus 로고
    • tRNA punctuation model of RNA processing in human mitochondria
    • Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 27
    • 0026226051 scopus 로고
    • Large mitochondrial DNA differences between morphologically similar Penaeid shrimp
    • Palumbi S.R., and Benzie J.A.H. Large mitochondrial DNA differences between morphologically similar Penaeid shrimp. Mol. Mar. Biol. Biotechnol. 1 (1991) 27-34
    • (1991) Mol. Mar. Biol. Biotechnol. , vol.1 , pp. 27-34
    • Palumbi, S.R.1    Benzie, J.A.H.2
  • 28
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Krandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1 (1998) 817-818
    • (1998) Bioinformatics , vol.1 , pp. 817-818
    • Posada, D.1    Krandall, K.A.2
  • 29
    • 4444323220 scopus 로고    scopus 로고
    • Phylogenetic relationships of 12 penaeoidea shrimp species deduced from mitochondrial DNA sequences
    • Quan J., Zhuang Z., Deng J., Dai J., and Zhang Y.P. Phylogenetic relationships of 12 penaeoidea shrimp species deduced from mitochondrial DNA sequences. Biochem. Genet. 42 (2004) 331-345
    • (2004) Biochem. Genet. , vol.42 , pp. 331-345
    • Quan, J.1    Zhuang, Z.2    Deng, J.3    Dai, J.4    Zhang, Y.P.5
  • 32
    • 0031039210 scopus 로고    scopus 로고
    • A large-subunit mitochondrial ribosomal DNA sequence translocated to the nuclear genome of two stone crabs (Menippe)
    • Schneider-Broussard R., and Neigel J.E. A large-subunit mitochondrial ribosomal DNA sequence translocated to the nuclear genome of two stone crabs (Menippe). Mol. Biol. Evol. 14 (1997) 156-165
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 156-165
    • Schneider-Broussard, R.1    Neigel, J.E.2
  • 33
    • 34748819369 scopus 로고    scopus 로고
    • The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations
    • Shen X., Ren J., Cui Z., Sha Z., Wang B., Xiang J., and Liu B. The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations. Gene 403 (2007) 98-109
    • (2007) Gene , vol.403 , pp. 98-109
    • Shen, X.1    Ren, J.2    Cui, Z.3    Sha, Z.4    Wang, B.5    Xiang, J.6    Liu, B.7
  • 35
    • 17044408705 scopus 로고    scopus 로고
    • Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements
    • Sun H., Zhou K., and Song D. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene 349 (2005) 207-217
    • (2005) Gene , vol.349 , pp. 207-217
    • Sun, H.1    Zhou, K.2    Song, D.3
  • 37
    • 0027968068 scopus 로고
    • CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0031204055 scopus 로고    scopus 로고
    • Phylogeny of the side-blotched lizards (Phrynosomatidae: Uta) based in mtDNA sequences: support for a Midpeninsular seaway in Baja California
    • Upton D.E., and Murphy R.W. Phylogeny of the side-blotched lizards (Phrynosomatidae: Uta) based in mtDNA sequences: support for a Midpeninsular seaway in Baja California. Mol. Phylogenet. Evol. 8 (1997) 104-113
    • (1997) Mol. Phylogenet. Evol. , vol.8 , pp. 104-113
    • Upton, D.E.1    Murphy, R.W.2
  • 39
    • 31844446107 scopus 로고    scopus 로고
    • RFLP analysis of the mtDNA control region in the white shrimp (Litopenaeus vannamei) populations from the eastern Pacific
    • Valles-Jimenez R., Gaffney P.M., and Perez-Enriquez R. RFLP analysis of the mtDNA control region in the white shrimp (Litopenaeus vannamei) populations from the eastern Pacific. Mar. Biol. 148 (2006) 867-873
    • (2006) Mar. Biol. , vol.148 , pp. 867-873
    • Valles-Jimenez, R.1    Gaffney, P.M.2    Perez-Enriquez, R.3
  • 40
    • 0028031058 scopus 로고
    • The complete mitochondrial DNA sequence of the crustacean Artemia franciscana
    • Valverde J.R., B. B., Moratilla C., R. M., and Garrese R. The complete mitochondrial DNA sequence of the crustacean Artemia franciscana. J. Mol. Evol. 39 (1994) 400-408
    • (1994) J. Mol. Evol. , vol.39 , pp. 400-408
    • Valverde, J.R.1    B., B.2    Moratilla, C.3    R., M.4    Garrese, R.5
  • 41
    • 0028157476 scopus 로고
    • Partial mitochondrial DNA sequence of the crustacean Daphnia pulex
    • Van Raay T.J., and Crease T.J. Partial mitochondrial DNA sequence of the crustacean Daphnia pulex. Curr. Genet. 25 (1994) 66-72
    • (1994) Curr. Genet. , vol.25 , pp. 66-72
    • Van Raay, T.J.1    Crease, T.J.2
  • 42
    • 13544274266 scopus 로고    scopus 로고
    • Molecular phylogeny of superfamily penaeoidea Rafinesque-Schmaltz, 1815, based on mitochondrial 16S partial sequence analysis
    • Vazquez-Bader A., Carrero J.C., García-Varela M., Gracia A., and Laclette J.P. Molecular phylogeny of superfamily penaeoidea Rafinesque-Schmaltz, 1815, based on mitochondrial 16S partial sequence analysis. J. Shellfish Res. 23 (2004) 911-917
    • (2004) J. Shellfish Res. , vol.23 , pp. 911-917
    • Vazquez-Bader, A.1    Carrero, J.C.2    García-Varela, M.3    Gracia, A.4    Laclette, J.P.5
  • 43
    • 27744494815 scopus 로고    scopus 로고
    • Molecular phylogeny of penaeid shrimps inferred from two mitochondrial markers
    • Voloch C.M., Freire P.R., and Russo C.A.M. Molecular phylogeny of penaeid shrimps inferred from two mitochondrial markers. Genet. Mol. Res. 4 (2005) 668-674
    • (2005) Genet. Mol. Res. , vol.4 , pp. 668-674
    • Voloch, C.M.1    Freire, P.R.2    Russo, C.A.M.3
  • 44
    • 0034848015 scopus 로고    scopus 로고
    • Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data
    • Williams S.T., Knowlton R.E., Weigt L.A., and Jara J.A. Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data. Mol. Phylogenet. Evol. 20 (2001) 375-389
    • (2001) Mol. Phylogenet. Evol. , vol.20 , pp. 375-389
    • Williams, S.T.1    Knowlton, R.E.2    Weigt, L.A.3    Jara, J.A.4
  • 45
    • 0034035067 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?
    • Wilson K., Cahill V., Ballment E., and Benzie J.A.H. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?. Mol. Biol. Evol. 17 (2000) 863-874
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 863-874
    • Wilson, K.1    Cahill, V.2    Ballment, E.3    Benzie, J.A.H.4
  • 46
    • 0037167171 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)
    • Yamauchi M., Miya M., and Nishida M. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295 (2002) 89-96
    • (2002) Gene , vol.295 , pp. 89-96
    • Yamauchi, M.1    Miya, M.2    Nishida, M.3
  • 47
    • 0037633395 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the swimming crab Portunus trituberculatus (Crustacea: Decapoda: Brachyura)
    • Yamauchi M.M., Miya M.U., and Nishida M. Complete mitochondrial DNA sequence of the swimming crab Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene 311 (2003) 129-135
    • (2003) Gene , vol.311 , pp. 129-135
    • Yamauchi, M.M.1    Miya, M.U.2    Nishida, M.3
  • 48
    • 3943071790 scopus 로고    scopus 로고
    • PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus)
    • Yamauchi M.M., Miya M.U., Machida R.J., and Nishida M. PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar. Biotechnol. 6 (2004) 419-429
    • (2004) Mar. Biotechnol. , vol.6 , pp. 419-429
    • Yamauchi, M.M.1    Miya, M.U.2    Machida, R.J.3    Nishida, M.4


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