-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul F., Gish G., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, F.1
Gish, G.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
4
-
-
19944400426
-
Sequencing and comparing whole mitochondrial genomes of animals
-
Boore J.L., Macey J.R., and Medina M. Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 395 (2005) 311-348
-
(2005)
Methods Enzymol.
, vol.395
, pp. 311-348
-
-
Boore, J.L.1
Macey, J.R.2
Medina, M.3
-
5
-
-
0024351697
-
Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy
-
Boyce T.M., Zwick M.E., and Aquadro C.F. Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 123 (1989) 825-836
-
(1989)
Genetics
, vol.123
, pp. 825-836
-
-
Boyce, T.M.1
Zwick, M.E.2
Aquadro, C.F.3
-
6
-
-
43949160320
-
Branch support and tree stability
-
Bremer K. Branch support and tree stability. Cladistics 10 (1994) 295-304
-
(1994)
Cladistics
, vol.10
, pp. 295-304
-
-
Bremer, K.1
-
7
-
-
0022271984
-
The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code
-
Clary D.O., and Wolstenholme D.R. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. J. Mol. Evol. 22 (1985) 252-271
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 252-271
-
-
Clary, D.O.1
Wolstenholme, D.R.2
-
8
-
-
25444436951
-
The complete mitochondrial genome of the stomatopod crustacean Squilla mantis
-
Cook C.E. The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC Genomics 6 (2005) 105
-
(2005)
BMC Genomics
, vol.6
, pp. 105
-
-
Cook, C.E.1
-
9
-
-
0032783979
-
The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea)
-
Crease T.J. The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea). Gene 233 (1999) 89-99
-
(1999)
Gene
, vol.233
, pp. 89-99
-
-
Crease, T.J.1
-
10
-
-
0033662936
-
Genetic structure of two commercial penaeids (Penaeus californiensis and P. stylirostris) from the Gulf of California, as revealed by allozyme variation
-
de la Rosa-Vélez J., Escobar-Fernández R., Correa F., Maqueda-Cornejo M., and de la Torre-Cueto J. Genetic structure of two commercial penaeids (Penaeus californiensis and P. stylirostris) from the Gulf of California, as revealed by allozyme variation. Fish. Bull. 98 (2000) 674-683
-
(2000)
Fish. Bull.
, vol.98
, pp. 674-683
-
-
de la Rosa-Vélez, J.1
Escobar-Fernández, R.2
Correa, F.3
Maqueda-Cornejo, M.4
de la Torre-Cueto, J.5
-
11
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
34248213649
-
Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian corals
-
Fukami H., Chen C.A., Chiou C.Y., and Knowlton N. Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian corals. J. Mol. Evol. 64 (2007) 591-600
-
(2007)
J. Mol. Evol.
, vol.64
, pp. 591-600
-
-
Fukami, H.1
Chen, C.A.2
Chiou, C.Y.3
Knowlton, N.4
-
13
-
-
0029883055
-
Partial sequence of the shrimp Penaeus notialis mitochondrial genome
-
Garcia-Machado E., Dennebouy N., Suarez M.O., Mounolou J.C., and Monnerot M. Partial sequence of the shrimp Penaeus notialis mitochondrial genome. C.R. Sci. Paris-Sci la Vie/Life Sci. 319 (1996) 473-486
-
(1996)
C.R. Sci. Paris-Sci la Vie/Life Sci.
, vol.319
, pp. 473-486
-
-
Garcia-Machado, E.1
Dennebouy, N.2
Suarez, M.O.3
Mounolou, J.C.4
Monnerot, M.5
-
14
-
-
0036658871
-
Sequence and conservation of a rRNA and tRNAVal mitochondrial gene fragment from Penaeus californiensis and comparison with Penaeus vannamei and Penaeus stylirostris
-
Gutiérrez-Millán L.E., Peregrino-Uriarte A.B., Sotelo-Mundo R., Vargas-Albores F., and Yepiz-Plascencia G. Sequence and conservation of a rRNA and tRNAVal mitochondrial gene fragment from Penaeus californiensis and comparison with Penaeus vannamei and Penaeus stylirostris. Mar. Biotechnol. 4 (2002) 392-398
-
(2002)
Mar. Biotechnol.
, vol.4
, pp. 392-398
-
-
Gutiérrez-Millán, L.E.1
Peregrino-Uriarte, A.B.2
Sotelo-Mundo, R.3
Vargas-Albores, F.4
Yepiz-Plascencia, G.5
-
15
-
-
0034079347
-
Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura)
-
Hickerson M.C., and Cunningham C.W. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol. Biol. Evol. 17 (2000) 639-644
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 639-644
-
-
Hickerson, M.C.1
Cunningham, C.W.2
-
16
-
-
0034979888
-
One-step PCR amplification of complete arthropod mitochondrial genomes
-
Hwang U.W., Park C.J., Yong T.S., and Kim W. One-step PCR amplification of complete arthropod mitochondrial genomes. Mol. Phylogenet. Evol. 19 (2001) 345-352
-
(2001)
Mol. Phylogenet. Evol.
, vol.19
, pp. 345-352
-
-
Hwang, U.W.1
Park, C.J.2
Yong, T.S.3
Kim, W.4
-
17
-
-
0030811686
-
Nucleotide sequence divergence in the A + T-rich region of mitochondrial DNA in Drosophila simulans and D. mauritiana
-
Inohira K., Hara T., and Maatsura E.T. Nucleotide sequence divergence in the A + T-rich region of mitochondrial DNA in Drosophila simulans and D. mauritiana. Mol. Biol. Evol. 14 (1997) 814-822
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 814-822
-
-
Inohira, K.1
Hara, T.2
Maatsura, E.T.3
-
18
-
-
34247097942
-
The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae)
-
Ivey J.L., and Santos S.R. The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae). Gene 394 (2007) 35-44
-
(2007)
Gene
, vol.394
, pp. 35-44
-
-
Ivey, J.L.1
Santos, S.R.2
-
19
-
-
33749426647
-
The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
-
Kilpert F., and Podsiadlowski L. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics 7 (2006) 241
-
(2006)
BMC Genomics
, vol.7
, pp. 241
-
-
Kilpert, F.1
Podsiadlowski, L.2
-
20
-
-
0033367329
-
Mitochondrial genome evolution and the origin of eukariotes
-
Lang B.F., Gray M.W., and Burger G. Mitochondrial genome evolution and the origin of eukariotes. Annu. Rev. Genet. 33 (1999) 351-397
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 351-397
-
-
Lang, B.F.1
Gray, M.W.2
Burger, G.3
-
21
-
-
1642405475
-
Phylogenetic relationships and evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA
-
Lavery S., Chan T.Y., Tam Y.K., and Chu K. Phylogenetic relationships and evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA. Mol. Phylogenet. Evol. 31 (2004) 39-49
-
(2004)
Mol. Phylogenet. Evol.
, vol.31
, pp. 39-49
-
-
Lavery, S.1
Chan, T.Y.2
Tam, Y.K.3
Chu, K.4
-
22
-
-
0029411512
-
Drosophila melanogaster mitochondrial DNA: completion of the nucleotide sequence and evolutionary comparisons
-
Lewis O.L., Farr C.L., and Kaguni L.S. Drosophila melanogaster mitochondrial DNA: completion of the nucleotide sequence and evolutionary comparisons. Insect Mol. Biol. 4 (1995) 263-278
-
(1995)
Insect Mol. Biol.
, vol.4
, pp. 263-278
-
-
Lewis, O.L.1
Farr, C.L.2
Kaguni, L.S.3
-
23
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequences
-
Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequences. Nucleic Acids Res. 25 (1997) 955-964
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
24
-
-
0035147624
-
Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences
-
Maggioni R., Rogers A.D., Maclean N., and D'Incao F. Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences. Mol. Phylogenet. Evol. 18 (2001) 66-73
-
(2001)
Mol. Phylogenet. Evol.
, vol.18
, pp. 66-73
-
-
Maggioni, R.1
Rogers, A.D.2
Maclean, N.3
D'Incao, F.4
-
25
-
-
24144464820
-
Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae)
-
Miller A.D., Murphy N.P., Burridge C.P., and Austin C.M. Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae). Mar. Biotechnol. 7 (2005) 339-349
-
(2005)
Mar. Biotechnol.
, vol.7
, pp. 339-349
-
-
Miller, A.D.1
Murphy, N.P.2
Burridge, C.P.3
Austin, C.M.4
-
26
-
-
0019444843
-
tRNA punctuation model of RNA processing in human mitochondria
-
Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
-
(1981)
Nature
, vol.290
, pp. 470-474
-
-
Ojala, D.1
Montoya, J.2
Attardi, G.3
-
27
-
-
0026226051
-
Large mitochondrial DNA differences between morphologically similar Penaeid shrimp
-
Palumbi S.R., and Benzie J.A.H. Large mitochondrial DNA differences between morphologically similar Penaeid shrimp. Mol. Mar. Biol. Biotechnol. 1 (1991) 27-34
-
(1991)
Mol. Mar. Biol. Biotechnol.
, vol.1
, pp. 27-34
-
-
Palumbi, S.R.1
Benzie, J.A.H.2
-
28
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D., and Krandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1 (1998) 817-818
-
(1998)
Bioinformatics
, vol.1
, pp. 817-818
-
-
Posada, D.1
Krandall, K.A.2
-
29
-
-
4444323220
-
Phylogenetic relationships of 12 penaeoidea shrimp species deduced from mitochondrial DNA sequences
-
Quan J., Zhuang Z., Deng J., Dai J., and Zhang Y.P. Phylogenetic relationships of 12 penaeoidea shrimp species deduced from mitochondrial DNA sequences. Biochem. Genet. 42 (2004) 331-345
-
(2004)
Biochem. Genet.
, vol.42
, pp. 331-345
-
-
Quan, J.1
Zhuang, Z.2
Deng, J.3
Dai, J.4
Zhang, Y.P.5
-
32
-
-
0031039210
-
A large-subunit mitochondrial ribosomal DNA sequence translocated to the nuclear genome of two stone crabs (Menippe)
-
Schneider-Broussard R., and Neigel J.E. A large-subunit mitochondrial ribosomal DNA sequence translocated to the nuclear genome of two stone crabs (Menippe). Mol. Biol. Evol. 14 (1997) 156-165
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 156-165
-
-
Schneider-Broussard, R.1
Neigel, J.E.2
-
33
-
-
34748819369
-
The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations
-
Shen X., Ren J., Cui Z., Sha Z., Wang B., Xiang J., and Liu B. The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations. Gene 403 (2007) 98-109
-
(2007)
Gene
, vol.403
, pp. 98-109
-
-
Shen, X.1
Ren, J.2
Cui, Z.3
Sha, Z.4
Wang, B.5
Xiang, J.6
Liu, B.7
-
35
-
-
17044408705
-
Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements
-
Sun H., Zhou K., and Song D. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene 349 (2005) 207-217
-
(2005)
Gene
, vol.349
, pp. 207-217
-
-
Sun, H.1
Zhou, K.2
Song, D.3
-
36
-
-
0035929340
-
Drosophila mitochondrial transcription factor A: characterization of its cDNA and expression pattern during development
-
Takata K., Yoshida H., Hirose F., Yamaguchi M., Kai M., Oshige M., Sakimoto I., Koiwai O., and Sakaguchi K. Drosophila mitochondrial transcription factor A: characterization of its cDNA and expression pattern during development. Biochem. Biophys. Res. Com. 287 (2001) 474-483
-
(2001)
Biochem. Biophys. Res. Com.
, vol.287
, pp. 474-483
-
-
Takata, K.1
Yoshida, H.2
Hirose, F.3
Yamaguchi, M.4
Kai, M.5
Oshige, M.6
Sakimoto, I.7
Koiwai, O.8
Sakaguchi, K.9
-
37
-
-
0027968068
-
CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
38
-
-
0031204055
-
Phylogeny of the side-blotched lizards (Phrynosomatidae: Uta) based in mtDNA sequences: support for a Midpeninsular seaway in Baja California
-
Upton D.E., and Murphy R.W. Phylogeny of the side-blotched lizards (Phrynosomatidae: Uta) based in mtDNA sequences: support for a Midpeninsular seaway in Baja California. Mol. Phylogenet. Evol. 8 (1997) 104-113
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 104-113
-
-
Upton, D.E.1
Murphy, R.W.2
-
39
-
-
31844446107
-
RFLP analysis of the mtDNA control region in the white shrimp (Litopenaeus vannamei) populations from the eastern Pacific
-
Valles-Jimenez R., Gaffney P.M., and Perez-Enriquez R. RFLP analysis of the mtDNA control region in the white shrimp (Litopenaeus vannamei) populations from the eastern Pacific. Mar. Biol. 148 (2006) 867-873
-
(2006)
Mar. Biol.
, vol.148
, pp. 867-873
-
-
Valles-Jimenez, R.1
Gaffney, P.M.2
Perez-Enriquez, R.3
-
40
-
-
0028031058
-
The complete mitochondrial DNA sequence of the crustacean Artemia franciscana
-
Valverde J.R., B. B., Moratilla C., R. M., and Garrese R. The complete mitochondrial DNA sequence of the crustacean Artemia franciscana. J. Mol. Evol. 39 (1994) 400-408
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 400-408
-
-
Valverde, J.R.1
B., B.2
Moratilla, C.3
R., M.4
Garrese, R.5
-
41
-
-
0028157476
-
Partial mitochondrial DNA sequence of the crustacean Daphnia pulex
-
Van Raay T.J., and Crease T.J. Partial mitochondrial DNA sequence of the crustacean Daphnia pulex. Curr. Genet. 25 (1994) 66-72
-
(1994)
Curr. Genet.
, vol.25
, pp. 66-72
-
-
Van Raay, T.J.1
Crease, T.J.2
-
42
-
-
13544274266
-
Molecular phylogeny of superfamily penaeoidea Rafinesque-Schmaltz, 1815, based on mitochondrial 16S partial sequence analysis
-
Vazquez-Bader A., Carrero J.C., García-Varela M., Gracia A., and Laclette J.P. Molecular phylogeny of superfamily penaeoidea Rafinesque-Schmaltz, 1815, based on mitochondrial 16S partial sequence analysis. J. Shellfish Res. 23 (2004) 911-917
-
(2004)
J. Shellfish Res.
, vol.23
, pp. 911-917
-
-
Vazquez-Bader, A.1
Carrero, J.C.2
García-Varela, M.3
Gracia, A.4
Laclette, J.P.5
-
43
-
-
27744494815
-
Molecular phylogeny of penaeid shrimps inferred from two mitochondrial markers
-
Voloch C.M., Freire P.R., and Russo C.A.M. Molecular phylogeny of penaeid shrimps inferred from two mitochondrial markers. Genet. Mol. Res. 4 (2005) 668-674
-
(2005)
Genet. Mol. Res.
, vol.4
, pp. 668-674
-
-
Voloch, C.M.1
Freire, P.R.2
Russo, C.A.M.3
-
44
-
-
0034848015
-
Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data
-
Williams S.T., Knowlton R.E., Weigt L.A., and Jara J.A. Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data. Mol. Phylogenet. Evol. 20 (2001) 375-389
-
(2001)
Mol. Phylogenet. Evol.
, vol.20
, pp. 375-389
-
-
Williams, S.T.1
Knowlton, R.E.2
Weigt, L.A.3
Jara, J.A.4
-
45
-
-
0034035067
-
The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?
-
Wilson K., Cahill V., Ballment E., and Benzie J.A.H. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?. Mol. Biol. Evol. 17 (2000) 863-874
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 863-874
-
-
Wilson, K.1
Cahill, V.2
Ballment, E.3
Benzie, J.A.H.4
-
46
-
-
0037167171
-
Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)
-
Yamauchi M., Miya M., and Nishida M. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295 (2002) 89-96
-
(2002)
Gene
, vol.295
, pp. 89-96
-
-
Yamauchi, M.1
Miya, M.2
Nishida, M.3
-
47
-
-
0037633395
-
Complete mitochondrial DNA sequence of the swimming crab Portunus trituberculatus (Crustacea: Decapoda: Brachyura)
-
Yamauchi M.M., Miya M.U., and Nishida M. Complete mitochondrial DNA sequence of the swimming crab Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene 311 (2003) 129-135
-
(2003)
Gene
, vol.311
, pp. 129-135
-
-
Yamauchi, M.M.1
Miya, M.U.2
Nishida, M.3
-
48
-
-
3943071790
-
PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus)
-
Yamauchi M.M., Miya M.U., Machida R.J., and Nishida M. PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar. Biotechnol. 6 (2004) 419-429
-
(2004)
Mar. Biotechnol.
, vol.6
, pp. 419-429
-
-
Yamauchi, M.M.1
Miya, M.U.2
Machida, R.J.3
Nishida, M.4
|