A large-subunit mitochondrial ribosomal DNA sequence translocated to the nuclear genome of two stone crabs (Menippe)

Molecular Biology and Evolution

Volumn 14, Issue 2, 1997, Pages 156-165

  Schneider Broussard, Robin ^a,b   Neigel, Joseph E ^a  

^a UNIVERSITY OF LOUISIANA AT LAFAYETTE   (United States)

^b UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

Author keywords

large subunit ribosomal DNA; Menippe; mitochondrial DNA; translocation

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CRAB; DNA SEQUENCE; GENE TRANSLOCATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION;

EID: 0031039210     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025748     Document Type: Article

References (42)

1. AVISE, J. C., J. ARNOLD, R. M. BALL, E. BERMINGHAM, T. LAMB, J. E. NEIGEL, C. A. REEB, and N. C. SAUNDERS. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:489-522.
2. BENTZEN, P., W. C. LEGGETT, and G. G. BROWN. 1988. Length and restriction site heteroplasmy in the mitochondrial DNA of American shad (Alosa sapidissima). Genetics 118:509-518.
3. BERT, T. M. 1986. Speciation in western Atlantic stone crabs (genus Menippe): the role of geological processes and climatic events in the formation and distribution of species. Mar. Biol. 93:157-170.
4. BERT, T. M., and R. G. HARRISON. 1988. Hybridization in western Atlantic stone crabs (genus Menippe): evolutionary history and ecological context influence species interactions. Evolution 42:528-544.
5. BIRNBOIM, H. C., and J. DOLY. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513-1523.
6. BOYCE, T. M., M. E. ZWICK, and C. F. AQUADRO. 1989. Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 123:825-836.
7. BROWN, W. M. 1985. The mitochondrial genome of animals. Pp. 95-130 in R. J. MACINTYRE, ed. Molecular evolutionary genetics. Plenum Press, New York.
8. CHEN, E. Y., and P. H. SEEBURG. 1985. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA 4:165-170.
9. CLARK, A. G. 1988. Deterministic theory of heteroplasmy. Evolution 42:621-626.
10. CUNNINGHAM, C. W., N. W. BLACKSTONE, and L. W. BUSS. 1992. Evolution of king crabs from hermit crab ancestors. Nature 355:539-542.
11. FARRELLY, F., and R. A. BUTOW. 1983. Rearranged mitochondrial genes in the yeast nuclear genome. Nature 310:296-301.
12. GELLISON, G., J. Y. BRADFIELD, B. N. WHITE, and G. R. WYATT. 1983. Mitochondrial DNA sequences in the nuclear genome of a locust. Nature 310:631-634.
13. GROHMANN, L., A. BRENNICKE, and W. SCHUSTER. 1992. The mitochondrial gene encoding ribosomal protein S12 has been translocated to the nuclear genome in Oenothera. Nucleic Acids Res. 20:5641-5646.
14. HEINONEN, T. Y. K., M. N. SCHNARE, and M. W. GRAY. 1990. Sequence heterogeneity in the duplicate large subunit ribosomal RNA genes of Tetrahymena pyriformis mitochondrial DNA. J. Biol. Chem. 265:22336-22341.
15. HIGGINS, D. G., and P. M. SHARP. 1988. CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73:237-244.
16. _. 1989. Fast and sensitive multiple sequence alignments on a microcomputer. CABIOS 5:151-153.
17. HOEH, W. R., K. H. BLAKLEY, and W. M. BROWN. 1991. Heteroplasmy suggests limited biparental inheritance of Mytilus mitochondrial DNA. Science 251:1488-1490.
18. HOELZEL, A. R., J. M. HANCOCK, and G. A. DOVER. 1993. Generation of VNTR's and heteroplasmy by sequence turnover in the mitochondrial control region of two elephant seal species. J. Mol. Evol. 37:190-197.
19. HSUCHEN, C.-C., R. M. KOTIN, and D. T. DUBIN. 1984. Sequences of the coding and flanking regions of the large ribosomal subunit RNA gene of mosquito mitochondria. Nucleic Acids Res. 20:7771-7785.
20. JACOBS, H. T., J. W. POSAKONY, J. W. GRULA, J. W. ROBERTS, J.-H. XIN, R. J. BRITTEN, and E. H. DAVIDSON. 1983. Mitochondrial DNA sequences in the nuclear genome of Strongylocentrotus purpuratus. J. Mol. Biol. 165:609-632.
21. KEMBLE, R. J., R. J. MANS, S. GABAY-LAUGHNAN, and J. R. LAUGHNAN. 1983. Sequences homologous to episomal mitochondrial DNAs in the maize nuclear genome. Nature 304:744-747.
22. KUMAR, S., K. TAMURA. and M. NEI. 1993. MEGA: molecular evolutionary genetics analysis. Version 1.0. The Pennsylvania State University, University Park, Pa.
23. LOPEZ, J., N. YUHKI, R. MASUDA, W. MODI, and S. O'BRIEN. 1994. A recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. J. Mol. Evol. 39:174-190.
24. MANIATIS, T., E. F. FRITSCH, and J. SAMBROOK. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
25. MORITZ, C., and W. M. BROWN. 1986. Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA. Science 233:1425-1427.
26. _. 1987. Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards. Proc. Natl. Acad. Sci. USA 84:7183-7187.
27. MULLIS, K. B., and F. A. FALOONA. 1987. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 155:335-350.
28. NEIGEL, J. E., D. L. FELDER, C. A. CHLAN, and R. LA PORTE. 1991. Cloning and screening of DNA probes for genetic studies in stone crabs (Decapoda: Xanthidae: Menippe). J. Crust. Biol. 11:496-505.
29. PALMERO, I., J. RENART, and L. SASTRE. 1988. Isolation of cDNA clones coding for mitochondrial 16s ribosomal RNA from the crustacean Artemia. Gene 68:239-248.
30. PALUMBI, S., A. MARTIN, S. ROMANO, W. O. MCMILLAN, L. STICE, and G. GRABOWSKI. 1991. The simple fool's guide to PCR. Version 2.0. University of Hawaii, Honolulu, HI.
31. QUINN, T. W., and B. N. WHITE. 1987. Analysis of DNA sequence variation. Pp. 163-198 in F. COOKE and P. A. BUCKELY, eds. Avian genetics. Academic Press, London.
32. RYCHLIK, W., and R. E. RHOADS. 1989. A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. Nucleic Acids Res. 17:8543-8551.
33. SANGER, F., S. NICKLEN, and A. R. COULSON. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
34. SCHAFFER, H. E., and R. R. SEDEROFF. 1981. Improved estimation of DNA fragment lengths from agarose gels. Anal. Biochem. 115:113-122.
35. SMITH, M. F., W. KELLEY, and J. L. PATTON. 1992. Mitochondrial DNA-like sequence in the nuclear genome of an akodontine rodent. Mol. Biol. Evol. 9:204-215.
36. SOLIGNAC, M., J. GENENERMONT, M. MONNEROT, and J.-C. MOUNOLOU. 1984. Genetics of mitochondria in Drosophila: mtDNA inheritance in heteroplasmic strains of D. mauritiana. Mol. Gen. Genet. 197: 183-188
37. SOUTHERN, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
38. THORPE, R. S., D. MCGREGOR, and A. M. CUMMING. 1993. Population evolution of western Canary Island lizards (Gallotia galloti): 4-base endonuclease restriction fragment length polymorphisms of mitochondrial DNA. Biol. J. Linn. Soc. 49:219-227.
39. VAN DEN BOOGAART, P., J. SAMALLO, and E. AGSTERIBBE. 1982. Similar genes for a mitochondrial ATPase subunit in the nuclear and mitochondrial genomes of Neurospora crassa. Nature 298:187-189.
40. WILLIAMS, A. B., and D. L. FELDER. 1986. Analysis of stone crabs: Menippe mercenaria (Say), restricted, and a previously unrecognized species described (Decapoda: Xanthidae). Proc. Biol. Soc. Wash. 99:517-543.
41. WINNEPENNINCKX, B., Y. VAN DE PEER, T. BACKELJAU, and R. DE WACHTER. 1995. CARD: a drawing tool for RNA secondary structure models. BioTechniques 18:1060-1063.
42. WRIGHT, R. M., and D. J. CUMMINGS. 1983. Integration of mitochondrial gene sequences within the nuclear genome during senescence in a fungus. Nature 302:86-88.