RFLP analysis of the mtDNA control region in white shrimp (Litopenaeus vannamei) populations from the eastern Pacific

Marine Biology

Volumn 148, Issue 4, 2006, Pages 867-873

  Valles Jimenez, R ^a   Gaffney, P M ^b   Perez Enriquez, R ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS DEL NOROESTE   (Mexico)

^b UNIVERSITY OF DELAWARE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC STRUCTURE;

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI;

EID: 31844446107     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-005-0122-2     Document Type: Article

References (48)

1. Aubert H, Lightner DV (2000) Identification of genetic populations of the Pacific blue shrimp Penaeus stylirostris of the Gulf of California, Mexico. Mar Biol 137:875-885
2. Avise JC (1994) Molecular markers, natural history and evolution. Chapman & Hall, New York
3. Benzie JAH (2000) Population genetic structure in penaeid prawns. Aquacult Res 30:95-119
4. Castro JA, Picornell A, Ramon M (1998) Mitochondrial DNA: a tool for populational genetics studies. Int Microbiol 1:327-332
5. Chappell J (2002) Sea level changes forced ice breakouts in the last Glacial cycle: new results from coral terraces. Quaternary Sci Rev 21:1229-1240
6. Chakraborty R (1990) Mitochondrial DNA polymorphism reveals hidden heterogeneity within some Asian populations. Am J Hum Genet 47:87-94
7. Chu KH, Li CP, Tam YK, Lavery S (2003) Application of mitochondrial control region in population genetic studies of the shrimp Penaeus. Mol Ecol Notes 3:120-122
8. De la Rosa-Velez J, Escobar R, Correa F, Félix E (1999) High allozyme variation and genetic similarity of two populations of commercial penaeids, Penaeus brevirostris (Kingsley) and P. vannamei (Boone), from the Gulf of California. J R Stat Soc 30:459-463
9. Dore I, Frimodt C (1987) An illustrated guide to shrimp of the world. Osprey Books, Huntington
10. Duda TF Jr, Palumbi SR (1999) Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Mar Biol 134:705-710
11. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
12. Felsenstein J (1993) Phylip (Phylogeny Inference Package), version 3.6c. Distributed by the author. Department of Genetics, University of Washington, Seattle
13. Féral JP (2002) How useful are the genetic markers in attempts to understand and manage marine biodiversity? J Exp Mar Biol Ecol 268:121-145
14. Garcia DK, Faggart MA, Rhoades L, Alcivar-Warren AA (1994) Genetic diversity of cultured Penaeus vannamei shrimp using three molecular aenetic techniques. Mol Mar Biol Biotech 5:270-280
15. Garcia-Machado E, Robainas A, Espinosa G, Oliva M, Páez J, Verdecia N, Monnerot M (2001) Allozyme and mitochondrial DNA variation in Cuban populations of the shrimp Farfantepenaeus notialis (Crustacea: Decapoda). Mar Biol 138:701-707
16. Graves JE, McDowell JR (1994) Genetic analysis of striped marlin (Tetrapturus audax) population structure in the Pacific Ocean. Can J Fish Aquat Sci 51:1762-1768
17. Harrison RG (1989) Animal mitochondrial DNA as a genetic marker in population and evolutionary biology. Tree 1:6-11
18. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247-276
19. Hoolihan JP, Premanandh J, D'Aloia-Palmieri MA, Benzie JAH (2004) Intraspecific phylogeographic isolation of Arabian Gulf silfish Istiophorus platypterus inferred from mitochondrial DNA. Mar Biol 145:465-475
20. Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725-738
21. Klinbunga S, Penman DJ, McAndrew BJ, Tassanakajon A, Jarayabhand P (1998) Genetic variation, populations differentiation, gene flow of the giant tiger shrimp (Penaeus monodon) inferred from mtDNA-RFLP data. In: Flegel TW (ed) Advances in shrimp biotechnology. National Center for Genetic Engineering and Biotechnology, Bangkok
22. Klinbunga S, Penman DJ, McAndrew BJ, Tassanakajon A (1999) Mitochondrial DNA diversity in three populations of the Giant Tiger Shrimp Penaeus monodon. Mar Biotechnol 1:113-121
23. Klinbunga S, Siludjai D, Wudthijinda W, Tassanakajon A, Jarayabhand P, Menasveta P (2001) Genetic heterogeneity of Giant Tiger Shrimp (Penaeus monodon) in Thailand revealed by RAPD and mitochondrial DNA RFLP analyses. Mar Biotechnol 3:428-438
24. Lavery S, Morit C, Fielder DR (1996) Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Mol Ecol 5:557-570
25. Lunt DH, Lawrence E, Whipple E, Hyman BC (1998) Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology. Mol Ecol 7:1441-1455
26. Martínez-Córdova LR, Campaña-Torres A (1999) Especies de peneidos actuales y potenciales para el cultivo. In: Martinez LR (ed) Cultivo de camarones Peneidos: principios y prácticas. AGT, S. A. Mexico, pp 23-38
27. McElroy DM, Moran P, Bermingham E, Kornfield I (1991) REAP: an integrated environment for the manipulation and phylogenetic analysis of restriction data. J Hered 83:157-158
28. McMillen-Jackson AL, Bert TM (2003) Disparate patterns of population genetic structure and population history in two sympatric penaeid shrimp species (Farfantepenaeus aztecus and Litopenaeus setiferus) in the eastern Unites States. Mol Ecol 12:2895-2905
29. McMillen-Jackson AL, Bert TM (2004) Genetic diversity in the mtDNA control region and population structure in the pink shrimp Farfantepenaeus duorarum. J Crust Biol 24(1):101-109
30. Meyer A (1994) DNA technology and phylogeny of fish. In: Beaumont AR (ed) Genetics and evolution of aquatic organisms. Chapman & Hall, London, pp 219-249
31. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
32. Nei M, Tajima F (1981) DNA polymorphism detectable by restriction endonucleases. Genetics 97:145-163
33. Raymond M, Rousset F (1995) GENEPOP (version 3.3): population genetics software for exact test and ecumenicism. J Hered 86:248-249
34. Rice WR (1989) Analyzing tables of statistical tests. Evolution 41:223-235
35. Rogers AR (1995) Genetic evidence for a Pleistocene population explosion. Evolution 49:608-615
36. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Ecol Evol 9:552-569
37. Rothlisberg PC (1982) Vertical migration and its effect on dispersal of penaeid shrimp postlarvae in the Gulf of Carpentaria, Australia. Fish Bull 80:541-554
38. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2.000; a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
39. Sunden SLF, Davis SK (1991) Evaluation of genetic variation in domestic population of Penaeus vannamei (Boone): a comparison with three natural populations. Aquaculture 97:131-142
40. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
41. Thorpe JP, Solé-Cava AM, Watts PC (2000) Exploited marine invertebrates: genetics and fisheries. Hydrobiologia 420:165-184
42. Trasviña A, Lluch-Cota D, Filonov AE, Gallegos A (1999) Oceanografía y El Niño. In: Magaña VOR (ed) Los impactos de El Niño en México. UNAM, Mexico, pp 69-101
43. Valles-Jimenez R, Cruz P, Perez-Enriquez R (2004) Population genetic structure of Pacific white shrimp (Litopenaeus vannamei) from Mexico to Panama: microsatellite DNA variation. Mar Biotechnol 6:475-484
44. Van Hooft WF, Groen AF, Prins HHT (2002) Phylogeography of the African buffalo based on mitochondrial and Y-chromosomal loci: Pleistocene origin and population expansion of the Cape buffalo subspecies. Mol Ecol 11:267-279
45. Ward RD (2000) Genetics in fisheries management. Hydrobiologia 420:191-201
46. Weir BS, Cockerham CC (1984) Estimation F-statistics for the analysis of population structure. Evolution 38:1358-1370
47. Wolfus GM, Garcia DK, Alcivar-Warren AA (1997) Application of the microsatellite technique for analyzing genetic diversity in shrimp breeding programs. Aquaculture 152:35-47
48. Zhang D, Hewitt G (2003) Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol Ecol 12:563-584