메뉴 건너뛰기




Volumn 355, Issue 5, 2006, Pages 1014-1025

A pathway for the transmission of allosteric signals in the ribosome through a network of RNA tertiary interactions

Author keywords

Ribosome signal transmission and conformational changes; rRNA tertiary interactions

Indexed keywords

GUANOSINE TRIPHOSPHATASE; NUCLEOTIDE; RICIN; RNA;

EID: 29444436631     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.11.037     Document Type: Article
Times cited : (21)

References (43)
  • 1
    • 0023405923 scopus 로고
    • Evidence that the G2661 region of 23 S rRNA is located at the ribosomal binding sites of both elongation factors
    • T.P. Hausner, J. Atmadja, and K.H. Nierhaus Evidence that the G2661 region of 23 S rRNA is located at the ribosomal binding sites of both elongation factors Biochimie 69 1987 911 923
    • (1987) Biochimie , vol.69 , pp. 911-923
    • Hausner, T.P.1    Atmadja, J.2    Nierhaus, K.H.3
  • 2
    • 0023722010 scopus 로고
    • Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23 S RNA
    • D. Moazed, J.M. Robertson, and H.F. Noller Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23 S RNA Nature 334 1988 362 364
    • (1988) Nature , vol.334 , pp. 362-364
    • Moazed, D.1    Robertson, J.M.2    Noller, H.F.3
  • 3
    • 0030774277 scopus 로고    scopus 로고
    • The ribosome-in-pieces: Binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23 S ribosomal RNA
    • A. Munishkin, and I.G. Wool The ribosome-in-pieces: binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23 S ribosomal RNA Proc. Natl Acad. Sci. USA 94 1997 12280 12284
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12280-12284
    • Munishkin, A.1    Wool, I.G.2
  • 4
    • 1442299243 scopus 로고    scopus 로고
    • The location and the significance of a cross-link between the sarcin/ricin domain of ribosomal RNA and the elongation factor-G
    • Y.L. Chan, C.C. Correll, and I.G. Wool The location and the significance of a cross-link between the sarcin/ricin domain of ribosomal RNA and the elongation factor-G J. Mol. Biol. 337 2004 263 272
    • (2004) J. Mol. Biol. , vol.337 , pp. 263-272
    • Chan, Y.L.1    Correll, C.C.2    Wool, I.G.3
  • 6
    • 0002241318 scopus 로고
    • Involvement of specific portions of ribosomal RNA in defined ribosomal functions: A study utilizing antibiotics
    • B. Hardesty G. Kramer Springer Verlag New York
    • E. Cundliffe Involvement of specific portions of ribosomal RNA in defined ribosomal functions: a study utilizing antibiotics B. Hardesty G. Kramer Structure, Function, and Genetics of Ribosomes 1986 Springer Verlag New York 586 604
    • (1986) Structure, Function, and Genetics of Ribosomes , pp. 586-604
    • Cundliffe, E.1
  • 7
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • N. Ban, P. Nissen, J. Hansen, P.B. Moore, and T.A. Steitz The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution Science 289 2000 905 920
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 9
    • 73649152457 scopus 로고
    • Allosteric proteins and cellular control systems
    • J. Monod, J.P. Changeux, and F. Jacob Allosteric proteins and cellular control systems J. Mol. Biol. 6 1963 306 329
    • (1963) J. Mol. Biol. , vol.6 , pp. 306-329
    • Monod, J.1    Changeux, J.P.2    Jacob, F.3
  • 10
    • 0026690643 scopus 로고
    • Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation
    • I.G. Wool, A. Glück, and Y. Endo Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation Trends Biochem. Sci. 17 1992 266 269
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 266-269
    • Wool, I.G.1    Glück, A.2    Endo, Y.3
  • 11
    • 0033613998 scopus 로고    scopus 로고
    • Mutations in the conserved P loop perturb the conformation of two structural elements in the peptidyl transferase center of 23 S ribosomal RNA
    • S.T. Gregory, and A.E. Dahlberg Mutations in the conserved P loop perturb the conformation of two structural elements in the peptidyl transferase center of 23 S ribosomal RNA J. Mol. Biol. 285 1999 1475 1483
    • (1999) J. Mol. Biol. , vol.285 , pp. 1475-1483
    • Gregory, S.T.1    Dahlberg, A.E.2
  • 12
    • 0033634670 scopus 로고    scopus 로고
    • Periodic conformational changes in rRNA: Monitoring the dynamics of translating ribosomes
    • N. Polacek, S. Patzke, K.H. Nierhaus, and A. Barta Periodic conformational changes in rRNA: monitoring the dynamics of translating ribosomes Mol. Cell 6 2000 159 171
    • (2000) Mol. Cell , vol.6 , pp. 159-171
    • Polacek, N.1    Patzke, S.2    Nierhaus, K.H.3    Barta, A.4
  • 15
    • 1442326707 scopus 로고    scopus 로고
    • Interactions of translational factor EF-G with the bacterial ribosome before and after mRNA translocation
    • K.S. Wilson, and R. Nechifor Interactions of translational factor EF-G with the bacterial ribosome before and after mRNA translocation J. Mol. Biol. 337 2004 15 30
    • (2004) J. Mol. Biol. , vol.337 , pp. 15-30
    • Wilson, K.S.1    Nechifor, R.2
  • 16
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, and Y. Du The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinformatics 3 2002 2
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 17
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16 S rRNA
    • T. Powers, and H.F. Noller Dominant lethal mutations in a conserved loop in 16 S rRNA Proc. Natl Acad. Sci. USA 87 1990 1042 1046
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2
  • 18
    • 0033593240 scopus 로고    scopus 로고
    • The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA
    • M.R. Macbeth, and I.G. Wool The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA J. Mol. Biol. 285 1999 965 975
    • (1999) J. Mol. Biol. , vol.285 , pp. 965-975
    • MacBeth, M.R.1    Wool, I.G.2
  • 19
    • 0033011939 scopus 로고    scopus 로고
    • Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons
    • T. Asai, C. Condon, J. Voulgaris, D. Zaporojets, B. Shen, and M. Al-Omar Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons J. Bacteriol. 181 1999 3803 3809
    • (1999) J. Bacteriol. , vol.181 , pp. 3803-3809
    • Asai, T.1    Condon, C.2    Voulgaris, J.3    Zaporojets, D.4    Shen, B.5    Al-Omar, M.6
  • 20
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
    • T. Asai, D. Zaporojets, C. Squires, and C.L. Squires An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria Proc. Natl Acad. Sci. USA 96 1999 1971 1976
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaporojets, D.2    Squires, C.3    Squires, C.L.4
  • 21
    • 0023896715 scopus 로고
    • Mutations in ribosomal proteins L7/L12 perturb EF-G and EF-Tu functions
    • N. Bilgin, L.A. Kirsebom, M. Ehrenberg, and C.G. Kurland Mutations in ribosomal proteins L7/L12 perturb EF-G and EF-Tu functions Biochimie 70 1988 611 618
    • (1988) Biochimie , vol.70 , pp. 611-618
    • Bilgin, N.1    Kirsebom, L.A.2    Ehrenberg, M.3    Kurland, C.G.4
  • 23
    • 0015527108 scopus 로고
    • Interaction of siomycin with the acceptor site of Escherichia coli ribosomes
    • S. Watanabe Interaction of siomycin with the acceptor site of Escherichia coli ribosomes J. Mol. Biol. 67 1972 443 457
    • (1972) J. Mol. Biol. , vol.67 , pp. 443-457
    • Watanabe, S.1
  • 24
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • P. Nissen, J. Hansen, N. Ban, P.B. Moore, and T.A. Steitz The structural basis of ribosome activity in peptide bond synthesis Science 289 2000 920 930
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 25
    • 0036177483 scopus 로고    scopus 로고
    • A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50 S subunits
    • T.M. Schmeing, A.C. Seila, J.L. Hansen, B. Freeborn, J.K. Soukup, and S.A. Scaringe A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50 S subunits Nature Struct. Biol. 9 2002 225 230
    • (2002) Nature Struct. Biol. , vol.9 , pp. 225-230
    • Schmeing, T.M.1    Seila, A.C.2    Hansen, J.L.3    Freeborn, B.4    Soukup, J.K.5    Scaringe, S.A.6
  • 26
    • 0014932469 scopus 로고
    • Interaction of E. coli G factor with the 50 S ribosomal subunit
    • J.W. Bodley, and L. Lin Interaction of E. coli G factor with the 50 S ribosomal subunit Nature 227 1970 60 61
    • (1970) Nature , vol.227 , pp. 60-61
    • Bodley, J.W.1    Lin, L.2
  • 27
    • 0001643980 scopus 로고
    • Studies on translocation V: Fusidic acid stabilization of a eukaryotic ribosome-translocation factor-GDP complex
    • J.W. Bodley, L. Lin, M.L. Salas, and M. Tao Studies on translocation V: fusidic acid stabilization of a eukaryotic ribosome-translocation factor-GDP complex FEBS Letters 11 1970 153 156
    • (1970) FEBS Letters , vol.11 , pp. 153-156
    • Bodley, J.W.1    Lin, L.2    Salas, M.L.3    Tao, M.4
  • 28
    • 0036830120 scopus 로고    scopus 로고
    • Ribosomal proteins at the stalk region modulate functional rRNA structures in the GTPase center
    • T. Uchiumi, S. Honma, Y. Endo, and A. Hachimori Ribosomal proteins at the stalk region modulate functional rRNA structures in the GTPase center J. Biol. Chem. 277 2002 41401 41409
    • (2002) J. Biol. Chem. , vol.277 , pp. 41401-41409
    • Uchiumi, T.1    Honma, S.2    Endo, Y.3    Hachimori, A.4
  • 29
    • 0016663406 scopus 로고
    • Mechanism of the ribosome-dependent uncoupled GTPase reaction catalyzed by polypeptide chain elongation factor G
    • N. Arai, and Y. Kaziro Mechanism of the ribosome-dependent uncoupled GTPase reaction catalyzed by polypeptide chain elongation factor G J. Biochem. (Tokyo) 77 1975 439 447
    • (1975) J. Biochem. (Tokyo) , vol.77 , pp. 439-447
    • Arai, N.1    Kaziro, Y.2
  • 30
    • 0017888435 scopus 로고
    • Regulation of turnover GTPase activity of elongation factor G: The 30-S-coupled and 30-S-uncoupled reactions. Coordinated effects of cations, pH and polyamines
    • G. Sander, G. Parlato, J.B. Crechet, K. Nagel, and A. Parmeggiani Regulation of turnover GTPase activity of elongation factor G: the 30-S-coupled and 30-S-uncoupled reactions. Coordinated effects of cations, pH and polyamines Eur. J. Biochem. 86 1978 555 563
    • (1978) Eur. J. Biochem. , vol.86 , pp. 555-563
    • Sander, G.1    Parlato, G.2    Crechet, J.B.3    Nagel, K.4    Parmeggiani, A.5
  • 31
    • 0031587290 scopus 로고    scopus 로고
    • An a to U transversion at position 1067 of 23 S rRNA from Escherichia coli impairs EF-Tu and EF-G function
    • U. Saarma, J. Remme, M. Ehrenberg, and N. Bilgin An A to U transversion at position 1067 of 23 S rRNA from Escherichia coli impairs EF-Tu and EF-G function J. Mol. Biol. 272 1997 327 335
    • (1997) J. Mol. Biol. , vol.272 , pp. 327-335
    • Saarma, U.1    Remme, J.2    Ehrenberg, M.3    Bilgin, N.4
  • 35
    • 0033534470 scopus 로고    scopus 로고
    • Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6
    • T. Uchiumi, N. Sato, A. Wada, and A. Hachimori Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6 J. Biol. Chem. 274 1999 681 686
    • (1999) J. Biol. Chem. , vol.274 , pp. 681-686
    • Uchiumi, T.1    Sato, N.2    Wada, A.3    Hachimori, A.4
  • 36
    • 0033578939 scopus 로고    scopus 로고
    • The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: The structure at 1.11 Å resolution
    • C.C. Correll, I.G. Wool, and A. Munishkin The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 Å resolution J. Mol. Biol. 292 1999 275 287
    • (1999) J. Mol. Biol. , vol.292 , pp. 275-287
    • Correll, C.C.1    Wool, I.G.2    Munishkin, A.3
  • 37
    • 0343898815 scopus 로고    scopus 로고
    • Determination of the 28 S ribosomal RNA identity element (G4319) for alpha-sarcin and the relationship of recognition to the selection of the catalytic site
    • A. Glück, and I.G. Wool Determination of the 28 S ribosomal RNA identity element (G4319) for alpha-sarcin and the relationship of recognition to the selection of the catalytic site J. Mol. Biol. 256 1996 838 848
    • (1996) J. Mol. Biol. , vol.256 , pp. 838-848
    • Glück, A.1    Wool, I.G.2
  • 38
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • T.A. Kunkel Rapid and efficient site-specific mutagenesis without phenotypic selection Proc. Natl Acad. Sci. USA 82 1985 488 492
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 39
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • S. Stern, D. Moazed, and H.F. Noller Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension Methods Enzymol. 164 1988 481 489
    • (1988) Methods Enzymol. , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 40
    • 0002477677 scopus 로고
    • Isolation and analysis of ribosomes from prokaryotes, eukaryotes, and organelles
    • G. Speddings Oxford University Press Oxford, New York, Tokyo
    • G, Spedding Isolation and analysis of ribosomes from prokaryotes, eukaryotes, and organelles G. Speddings Ribosomes and Protein Synthesis-A Practical Approach 1990 Oxford University Press Oxford, New York, Tokyo 1 29
    • (1990) Ribosomes and Protein Synthesis-A Practical Approach , pp. 1-29
    • Spedding, G.1
  • 41
    • 0018338493 scopus 로고
    • Isolation of physically and enzymically homogeneous Escherichia coli elongation factor G
    • M.S. Rohrbach, and J.W. Bodley Isolation of physically and enzymically homogeneous Escherichia coli elongation factor G Methods Enzymol. 60 1979 606 614
    • (1979) Methods Enzymol. , vol.60 , pp. 606-614
    • Rohrbach, M.S.1    Bodley, J.W.2
  • 42
    • 0037108102 scopus 로고    scopus 로고
    • GTPase activation of elongation factors Tu and G on the ribosome
    • D. Mohr, W. Wintermeyer, and M.V. Rodnina GTPase activation of elongation factors Tu and G on the ribosome Biochemistry (Mosc) 41 2002 12520 12528
    • (2002) Biochemistry (Mosc) , vol.41 , pp. 12520-12528
    • Mohr, D.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 43
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes
    • D. Moazed, and H.F. Noller Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes Cell 47 1986 985 994
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.