-
1
-
-
27244437783
-
Handling marker-marker linkage disequilibrium: Pedigree analysis with clustered markers
-
Abecasis GR, Wigginton JE. 2005. Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am J Hum Genet 77:754-767.
-
(2005)
Am J Hum Genet
, vol.77
, pp. 754-767
-
-
Abecasis, G.R.1
Wigginton, J.E.2
-
2
-
-
0036338150
-
Merlin - apid analysis of dense genetic maps using sparse gene flow trees
-
Abecasis GR, Cherny SS, Cookson WO, Cardon LR. 2002. Merlin - apid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 30:97-101.
-
(2002)
Nat Genet
, vol.30
, pp. 97-101
-
-
Abecasis, G.R.1
Cherny, S.S.2
Cookson, W.O.3
Cardon, L.R.4
-
3
-
-
0001862769
-
An inequality and associated maximization technique in statistical estimation for probabilistic functions of Markov processes
-
Baum LE. 1972. An inequality and associated maximization technique in statistical estimation for probabilistic functions of Markov processes. Inequalities 3:1-8.
-
(1972)
Inequalities
, vol.3
, pp. 1-8
-
-
Baum, L.E.1
-
4
-
-
0022792421
-
Estimating the power of a proposed linkage study: A practical computer simulation approach
-
Boehnke M. 1986. Estimating the power of a proposed linkage study: a practical computer simulation approach. Am J Hum Genet 39:513-527.
-
(1986)
Am J Hum Genet
, vol.39
, pp. 513-527
-
-
Boehnke, M.1
-
5
-
-
23844506823
-
Linkage disequilibrium inflates type 1 error rates in multipoint linkage analysis when parental genotypes are missing
-
Boyles AL, Scott WK, Martin ER, Schmidt S, Li Y-J, Ashley-Koch A, Bass MP, Schmidt M, Pericak-Vance MA, Speer MC, Hauser E. 2005. Linkage disequilibrium inflates type 1 error rates in multipoint linkage analysis when parental genotypes are missing. Hum Hered 59:220-227.
-
(2005)
Hum Hered
, vol.59
, pp. 220-227
-
-
Boyles, A.L.1
Scott, W.K.2
Martin, E.R.3
Schmidt, S.4
Li, Y.-J.5
Ashley-Koch, A.6
Bass, M.P.7
Schmidt, M.8
Pericak-Vance, M.A.9
Speer, M.C.10
Hauser, E.11
-
7
-
-
10844249215
-
Linkage analysis using single nucleotide polymorphisms
-
Browning BL, Brashear DL, Butler AA, Devon DC, Harris EC, Nelsen AJ, Yarnall DP, Ehm MG, Wagner MH. 2004. Linkage analysis using single nucleotide polymorphisms. Hum Hered 57:220-227.
-
(2004)
Hum Hered
, vol.57
, pp. 220-227
-
-
Browning, B.L.1
Brashear, D.L.2
Butler, A.A.3
Devon, D.C.4
Harris, E.C.5
Nelsen, A.J.6
Yarnall, D.P.7
Ehm, M.G.8
Wagner, M.H.9
-
9
-
-
0033237335
-
A generalization of the transmission/disequilibrium test for uncertain haplotype transmission
-
Clayton D. 1999. A generalization of the transmission/disequilibrium test for uncertain haplotype transmission. Am J Hum Genet 65:1170-1177.
-
(1999)
Am J Hum Genet
, vol.65
, pp. 1170-1177
-
-
Clayton, D.1
-
10
-
-
0034791035
-
High-resolution haplotype structure in the human genome
-
Daly MJ, Rioux JD, Schaffner SF, Hudson TJ, Lander E. 2001. High-resolution haplotype structure in the human genome. Nat Genet 29:229-232.
-
(2001)
Nat Genet
, vol.29
, pp. 229-232
-
-
Daly, M.J.1
Rioux, J.D.2
Schaffner, S.F.3
Hudson, T.J.4
Lander, E.5
-
11
-
-
0020711374
-
The probability that related individuals share some section of the genome identical by descent
-
Donnelly KP. 1983. The probability that related individuals share some section of the genome identical by descent. Theor Pop Biol 23:34-64.
-
(1983)
Theor Pop Biol
, vol.23
, pp. 34-64
-
-
Donnelly, K.P.1
-
12
-
-
0034934775
-
Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies
-
Douglas JA, Boehenke M, Gillanders T, Trent JM, Gruber SB. 2001. Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nat Genet 28:361-364.
-
(2001)
Nat Genet
, vol.28
, pp. 361-364
-
-
Douglas, J.A.1
Boehenke, M.2
Gillanders, T.3
Trent, J.M.4
Gruber, S.B.5
-
13
-
-
0015183542
-
A general method for the analysis of pedigree data
-
Elston RC, Stewart J. 1971. A general method for the analysis of pedigree data. Hum Hered 21:523-542.
-
(1971)
Hum Hered
, vol.21
, pp. 523-542
-
-
Elston, R.C.1
Stewart, J.2
-
14
-
-
2442694424
-
A Markov chain approach to reconstruction of long haplotypes
-
Eronen L, Geerts F, Toivonen H. 2004. A Markov chain approach to reconstruction of long haplotypes. Pac Symp Biocomput 104-115.
-
(2004)
Pac Symp Biocomput
, pp. 104-115
-
-
Eronen, L.1
Geerts, F.2
Toivonen, H.3
-
15
-
-
4544335122
-
Guidelines for genotyping in genomewide linkage studies: Single-nucleotide-polymorphism maps versus microsatellite maps
-
Evans DM, Cardon LR. 2004. Guidelines for genotyping in genomewide linkage studies: single-nucleotide-polymorphism maps versus microsatellite maps. Am J Hum Genet 75:687-692.
-
(2004)
Am J Hum Genet
, vol.75
, pp. 687-692
-
-
Evans, D.M.1
Cardon, L.R.2
-
16
-
-
0033366671
-
Combined linkage and association sib-pair analysis for quantitative traits
-
Fulker DW, Cherny SS, Sham PC, Hewitt JK. 1999. Combined linkage and association sib-pair analysis for quantitative traits. Am J Hum Genet 64:259-267.
-
(1999)
Am J Hum Genet
, vol.64
, pp. 259-267
-
-
Fulker, D.W.1
Cherny, S.S.2
Sham, P.C.3
Hewitt, J.K.4
-
17
-
-
0000874908
-
Linkage analysis in the presence of errors IV: Joint pseudomarker analysis of linkage and/or linkage disequilibrium on a mixture of pedigrees and singletons when the mode of inheritance cannot be accurately specified
-
Göring HH, Terwilliger JD. 2000. Linkage analysis in the presence of errors IV: joint pseudomarker analysis of linkage and/or linkage disequilibrium on a mixture of pedigrees and singletons when the mode of inheritance cannot be accurately specified. Am J Hum Genet 66:1310-1327.
-
(2000)
Am J Hum Genet
, vol.66
, pp. 1310-1327
-
-
Göring, H.H.1
Terwilliger, J.D.2
-
18
-
-
0034098774
-
Allegro, a new computer program for multipoint linkage analysis
-
Gudbjartsson DF, Jonasson K, Figge ML, Kong A. 2000. Allegro, a new computer program for multipoint linkage analysis. Nat Genet 25:12-13.
-
(2000)
Nat Genet
, vol.25
, pp. 12-13
-
-
Gudbjartsson, D.F.1
Jonasson, K.2
Figge, M.L.3
Kong, A.4
-
19
-
-
0032948850
-
Loss of information due to ambiguous haplotyping of SNPs
-
Hodge SE, Boehenke M, Spence MA. 1999. Loss of information due to ambiguous haplotyping of SNPs. Nat Genet 21:360-361.
-
(1999)
Nat Genet
, vol.21
, pp. 360-361
-
-
Hodge, S.E.1
Boehenke, M.2
Spence, M.A.3
-
20
-
-
10744224055
-
Determining inheritance distributions via stochastic penetrances
-
Hössjer O. 2003. Determining inheritance distributions via stochastic penetrances. J Am Stat Assoc 98:1035-1051.
-
(2003)
J Am Stat Assoc
, vol.98
, pp. 1035-1051
-
-
Hössjer, O.1
-
22
-
-
18944363163
-
-
Hössjer O. 2005b. Conditional likelihood score functions in linkage analysis. Biostatistics 6:313-332. Supplementary material at http://biostatistics.oupjournals.org/.
-
Hössjer O. 2005b. Conditional likelihood score functions in linkage analysis. Biostatistics 6:313-332. Supplementary material at http://biostatistics.oupjournals.org/.
-
-
-
-
23
-
-
33746485207
-
Modelling the effect of inbreeding among founders in linkage analysis
-
Hössjer O. 2006. Modelling the effect of inbreeding among founders in linkage analysis. Theor Pop Biol 70:146-163.
-
(2006)
Theor Pop Biol
, vol.70
, pp. 146-163
-
-
Hössjer, O.1
-
24
-
-
8844250042
-
Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis
-
Huang Q, Shete S, Amos CI. 2004. Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis. Am J Hum Genet 75:1106-1112.
-
(2004)
Am J Hum Genet
, vol.75
, pp. 1106-1112
-
-
Huang, Q.1
Shete, S.2
Amos, C.I.3
-
25
-
-
0030802544
-
A faster and more general hidden Markov model algorithm for multipoint likelihood calculations
-
Idury RM, Elston RC. 1997. A faster and more general hidden Markov model algorithm for multipoint likelihood calculations. Hum Hered 47:197-202.
-
(1997)
Hum Hered
, vol.47
, pp. 197-202
-
-
Idury, R.M.1
Elston, R.C.2
-
26
-
-
22144458727
-
Combined linkage and association mapping of quantitative trait loci by multiple markers
-
Jung J, Fan R, Jin L. 2005. Combined linkage and association mapping of quantitative trait loci by multiple markers. Genetics 170:881-898.
-
(2005)
Genetics
, vol.170
, pp. 881-898
-
-
Jung, J.1
Fan, R.2
Jin, L.3
-
27
-
-
0030728925
-
Allele-sharing models: LOD scores and accurate linkage tests
-
Kong A, Cox N. 1997. Allele-sharing models: LOD scores and accurate linkage tests. Am J Hum Genet 61:1179-1188.
-
(1997)
Am J Hum Genet
, vol.61
, pp. 1179-1188
-
-
Kong, A.1
Cox, N.2
-
28
-
-
0029886532
-
Parametric and nonparametric linkage analysis: A unified multipoint approach
-
Kruglyak L, Daly MJ, Reeve-Daly MP, Lander ES. 1996. Parametric and nonparametric linkage analysis: a unified multipoint approach. Am J Hum Genet 58:1347-1363.
-
(1996)
Am J Hum Genet
, vol.58
, pp. 1347-1363
-
-
Kruglyak, L.1
Daly, M.J.2
Reeve-Daly, M.P.3
Lander, E.S.4
-
29
-
-
0000803318
-
Construction of multilocus genetic maps in humans
-
Lander ES, Green P. 1987. Construction of multilocus genetic maps in humans. Proc Natl Acad Sci USA 84:2363-2367.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 2363-2367
-
-
Lander, E.S.1
Green, P.2
-
30
-
-
18944361861
-
Joint modelling of linkage and association: Identifying SNPs responsible for a linkage signal
-
Li M, Boehnke M, Abecasis GR. 2005. Joint modelling of linkage and association: identifying SNPs responsible for a linkage signal. Am J Hum Genet 76:934-949.
-
(2005)
Am J Hum Genet
, vol.76
, pp. 934-949
-
-
Li, M.1
Boehnke, M.2
Abecasis, G.R.3
-
31
-
-
0041488881
-
A 39-centimorgan-resolution. human single-nucleotide polymorhism linkage map and screening set
-
Matise TC, Sachidanandam R, Clark AG, Kruglyak L, Wijssman E, Kakol J, Buyske S, Chui B, Cohen P, de Toma C, Ehm M, Glanowski S, He Chunsheng, Heil J, Markianos K, McMullen I, Pericak-Vance MA, Silbergleit A, Stein L, Wagner M, Wilson AF, Winick JD, Winn-Deen ES, Yamashiro CT, Cann HM, Lai E, Holden AL. 2003. A 39-centimorgan-resolution. human single-nucleotide polymorhism linkage map and screening set. Am J Hum Genet 73:271-284.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 271-284
-
-
Matise, T.C.1
Sachidanandam, R.2
Clark, A.G.3
Kruglyak, L.4
Wijssman, E.5
Kakol, J.6
Buyske, S.7
Chui, B.8
Cohen, P.9
de Toma, C.10
Ehm, M.11
Glanowski, S.12
He, C.13
Heil, J.14
Markianos, K.15
McMullen, I.16
Pericak-Vance, M.A.17
Silbergleit, A.18
Stein, L.19
Wagner, M.20
Wilson, A.F.21
Winick, J.D.22
Winn-Deen, E.S.23
Yamashiro, C.T.24
Cann, H.M.25
Lai, E.26
Holden, A.L.27
more..
-
32
-
-
0032969483
-
Optimal allele-sharing statistics for genetic mapping using affected relatives
-
McPeek S. 1999. Optimal allele-sharing statistics for genetic mapping using affected relatives. Genet Epidemiol 16:225-249.
-
(1999)
Genet Epidemiol
, vol.16
, pp. 225-249
-
-
McPeek, S.1
-
33
-
-
0036138183
-
Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
-
Niu T, Qin ZS, Xu X, Liu JS. 2002. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet 70:157-169.
-
(2002)
Am J Hum Genet
, vol.70
, pp. 157-169
-
-
Niu, T.1
Qin, Z.S.2
Xu, X.3
Liu, J.S.4
-
34
-
-
0039513062
-
Computer-simulation methods in human linkage analysis
-
Ott J. 1989. Computer-simulation methods in human linkage analysis. Proc Natl Acad Sci USA 86:4175-4178.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 4175-4178
-
-
Ott, J.1
-
35
-
-
0037396706
-
Fine mapping of complex trait genes combining pedigree and linkage disequilibriurn information: A Bayesian unified framework
-
Pérez-Enciso M. 2003. Fine mapping of complex trait genes combining pedigree and linkage disequilibriurn information: a Bayesian unified framework. Genetics 163:1497-1510.
-
(2003)
Genetics
, vol.163
, pp. 1497-1510
-
-
Pérez-Enciso, M.1
-
36
-
-
0024602536
-
Estimating the power for a proposed linkage study for a complex genetic trait
-
Ploughman LM, Boehnke M. 1989. Estimating the power for a proposed linkage study for a complex genetic trait. Am J Hum Genet 44:543-551.
-
(1989)
Am J Hum Genet
, vol.44
, pp. 543-551
-
-
Ploughman, L.M.1
Boehnke, M.2
-
37
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner LR. 1989. A tutorial on hidden Markov models and selected applications in speech recognition. Proc IEEE 77:257-286.
-
(1989)
Proc IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
38
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
Reich DE, Cargill M, Bolk S, Ireland J, Sabeti PC, Richter DJ, Lavery T, Kouyoumjian R, Farhadian SF, Ward, Lander ES. 2001. Linkage disequilibrium in the human genome. Nature 411:199-204.
-
(2001)
Nature
, vol.411
, pp. 199-204
-
-
Reich, D.E.1
Cargill, M.2
Bolk, S.3
Ireland, J.4
Sabeti, P.C.5
Richter, D.J.6
Lavery, T.7
Kouyoumjian, R.8
Farhadian, S.F.9
Ward, L.E.S.10
-
39
-
-
84907319426
-
Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under non-standard conditions
-
Self S, Liang K-Y. 1987. Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under non-standard conditions. J Am Stat Assoc 82:605-610.
-
(1987)
J Am Stat Assoc
, vol.82
, pp. 605-610
-
-
Self, S.1
Liang, K.-Y.2
-
40
-
-
0036782136
-
Caution on pedigree haplotype inference with software that assumes linkage equilibrium
-
Schaid DJ, McDonnell SK, Wang L, Cunningham JM, Thibodeau. SN. 2002. Caution on pedigree haplotype inference with software that assumes linkage equilibrium. Am J Hum Genet 71:992-995.
-
(2002)
Am J Hum Genet
, vol.71
, pp. 992-995
-
-
Schaid, D.J.1
McDonnell, S.K.2
Wang, L.3
Cunningham, J.M.4
Thibodeau, S.N.5
-
41
-
-
8844269435
-
Comparison of microsatellites versus single-nucleotide polymorphisms in a genomewide linkage screen for prostate cancer-susceptibitity loci
-
Schaid DJ, Guenther JC, Christensen GB, Hebbring S, Rosenow C, Hilker CA, McDonnell SK, Cunningham JM, Slager SL, Blute ML, Thibodeau SN. 2004. Comparison of microsatellites versus single-nucleotide polymorphisms in a genomewide linkage screen for prostate cancer-susceptibitity loci. Am J Hum Genet 75:948-965.
-
(2004)
Am J Hum Genet
, vol.75
, pp. 948-965
-
-
Schaid, D.J.1
Guenther, J.C.2
Christensen, G.B.3
Hebbring, S.4
Rosenow, C.5
Hilker, C.A.6
McDonnell, S.K.7
Cunningham, J.M.8
Slager, S.L.9
Blute, M.L.10
Thibodeau, S.N.11
-
42
-
-
0033927466
-
Power of linkage versus association analysis of quantitative traits, by use of variance-components models, for sibship data
-
Sham PC, Cherny SS, Purcell S, Hewitt JK. 2000. Power of linkage versus association analysis of quantitative traits, by use of variance-components models, for sibship data. Am J Hum Genet 66:1616-1630.
-
(2000)
Am J Hum Genet
, vol.66
, pp. 1616-1630
-
-
Sham, P.C.1
Cherny, S.S.2
Purcell, S.3
Hewitt, J.K.4
-
43
-
-
0036143306
-
Tests for genetic association using family data
-
Shih M-C, Whittemore AS. 2002. Tests for genetic association using family data. Genet Epidmiol 22:128-145.
-
(2002)
Genet Epidmiol
, vol.22
, pp. 128-145
-
-
Shih, M.-C.1
Whittemore, A.S.2
-
44
-
-
0029945706
-
Descent graphs in pedigree analysis: Applications to haplotype mapping, locations scores, and marker-sharing statistics
-
Sobel E, Lange K. 1996. Descent graphs in pedigree analysis: applications to haplotype mapping, locations scores, and marker-sharing statistics. Am J Hum Genet 58:1323-1337.
-
(1996)
Am J Hum Genet
, vol.58
, pp. 1323-1337
-
-
Sobel, E.1
Lange, K.2
-
45
-
-
0043175289
-
Choosing haplotype-tagging SNPs based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the multiethnic cohort study
-
Stram DO, Haiman CA, Hirschhorn JN, Altshuler D, Kolonel LN, Henderson BE, Pike MC. 2003. Choosing haplotype-tagging SNPs based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the multiethnic cohort study. Hum Hered 55:27-36.
-
(2003)
Hum Hered
, vol.55
, pp. 27-36
-
-
Stram, D.O.1
Haiman, C.A.2
Hirschhorn, J.N.3
Altshuler, D.4
Kolonel, L.N.5
Henderson, B.E.6
Pike, M.C.7
-
46
-
-
0027213849
-
Chromosome-based method for rapid computer simulation in human genetic linkage analysis
-
Terwilliger JD, Speer M, Ott J. 1993. Chromosome-based method for rapid computer simulation in human genetic linkage analysis. Genet Epidemiol 10:217-224.
-
(1993)
Genet Epidemiol
, vol.10
, pp. 217-224
-
-
Terwilliger, J.D.1
Speer, M.2
Ott, J.3
-
47
-
-
79959524146
-
A haplotype map of the human genome
-
The International HamMap Consortium
-
The International HamMap Consortium. 2005. A haplotype map of the human genome. Nature 437:1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
49
-
-
0029737799
-
Genome scanning for linkage: An overview
-
Whittemore A. 1996. Genome scanning for linkage: an overview. Biometrics 59:704-716.
-
(1996)
Biometrics
, vol.59
, pp. 704-716
-
-
Whittemore, A.1
-
50
-
-
0028301661
-
A class of tests for linkage using affected pedigree members
-
Whittemore A, Halpern J. 1994. A class of tests for linkage using affected pedigree members. Biometrics 50:118-127.
-
(1994)
Biometrics
, vol.50
, pp. 118-127
-
-
Whittemore, A.1
Halpern, J.2
-
51
-
-
0033941025
-
Detection of disease genes by use of family data. I. Likelihood-based theory
-
Whittemore AS, To I-P. 2000. Detection of disease genes by use of family data. I. Likelihood-based theory Am J Hum Genet 66:1328-1340.
-
(2000)
Am J Hum Genet
, vol.66
, pp. 1328-1340
-
-
Whittemore, A.S.1
To, I.-P.2
-
52
-
-
0033809735
-
Combined linkage and linkage disequilibrium mapping for genome screens
-
Xiong M, Jin L. 2000. Combined linkage and linkage disequilibrium mapping for genome screens. Genet Epidemiol 19:211-234.
-
(2000)
Genet Epidemiol
, vol.19
, pp. 211-234
-
-
Xiong, M.1
Jin, L.2
|