메뉴 건너뛰기




Volumn 163, Issue 4, 2003, Pages 1497-1510

Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information: A Bayesian unified framework

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BAYES THEOREM; DIALLEL ANALYSIS; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC TRAIT; HAPLOTYPE; HUMAN; PEDIGREE; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; SIMULATION;

EID: 0037396706     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (44)

References (42)
  • 1
    • 0031028361 scopus 로고    scopus 로고
    • Transmission-disequilibrium tests for quantitative traits
    • ALLISON, D. B., 1997 Transmission-disequilibrium tests for quantitative traits. Am. J. Hum. Genet. 60: 676-690.
    • (1997) Am. J. Hum. Genet. , vol.60 , pp. 676-690
    • Allison, D.B.1
  • 2
    • 0033358532 scopus 로고    scopus 로고
    • Sibling-based tests of linkage and association for quantitative traits
    • ALLISON, D. B., M. HEO, N. KAPLAN and E. R. MARTIN, 1999 Sibling-based tests of linkage and association for quantitative traits. Am. J. Hum. Genet. 64: 1754-1763.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 1754-1763
    • Allison, D.B.1    Heo, M.2    Kaplan, N.3    Martin, E.R.4
  • 3
    • 0032759018 scopus 로고    scopus 로고
    • Quantitative trait locus detection using combined linkage, disequilibrium analysis
    • ALMASY, L., J. T. WILLIAMS, T. D. DYER and J. BLANGERO, 1999 Quantitative trait locus detection using combined linkage, disequilibrium analysis. Genet. Epidemiol. 17 (Suppl. 1): S31-S36.
    • (1999) Genet. Epidemiol. , vol.17 , Issue.SUPPL. 1
    • Almasy, L.1    Williams, J.T.2    Dyer, T.D.3    Blangero, J.4
  • 4
    • 0029150074 scopus 로고
    • A comparison of linkage disequilibrium measures for fine-scale mapping
    • DEVLIN, B., and N. RISCH, 1995 A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 29; 311-322.
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 5
    • 0035399728 scopus 로고    scopus 로고
    • SNP association studies in Alzheimer's disease highlight problems for complex disease analysis
    • EMAHAZION, T., L. FEUK, M. JOBS, S. L. SAWYER, D. FREDMAN et al., 2001 SNP association studies in Alzheimer's disease highlight problems for complex disease analysis. Trends Genet. 17: 407-413.
    • (2001) Trends Genet. , vol.17 , pp. 407-413
    • Emahazion, T.1    Feuk, L.2    Jobs, M.3    Sawyer, S.L.4    Fredman, D.5
  • 6
    • 0036259653 scopus 로고    scopus 로고
    • Simultaneous mining of linkage and linkage disequilibrium to fine map quantitative trait loci in outbred half-sib pedigrees: Revisiting the location of a quantitative trait locus with major effect on milk production on bovine chromosome 14
    • FARNIR, F., B. GRISART, W. COPPIETERS, J. RIQUET, P. BERZI et al., 2002 Simultaneous mining of linkage and linkage disequilibrium to fine map quantitative trait loci in outbred half-sib pedigrees: revisiting the location of a quantitative trait locus with major effect on milk production on bovine chromosome 14. Genetics 161: 275-287.
    • (2002) Genetics , vol.161 , pp. 275-287
    • Farnir, F.1    Grisart, B.2    Coppieters, W.3    Riquet, J.4    Berzi, P.5
  • 7
    • 0001244316 scopus 로고
    • Marker assisted selection using best linear unbiased prediction
    • FERNANDO, R. L., and M. GROSSMAN, 1989 Marker assisted selection using best linear unbiased prediction. Genet. Sel. Evol. 21: 467-477.
    • (1989) Genet. Sel. Evol. , vol.21 , pp. 467-477
    • Fernando, R.L.1    Grossman, M.2
  • 8
    • 0033366671 scopus 로고    scopus 로고
    • Combined linkage and association sib pair analysis for quantitative traits
    • FULKER, D. W., S. S. CHERNY, P. C. SHAM and J. K. HEWITT, 1999 Combined linkage and association sib pair analysis for quantitative traits. Am. J. Hum. Genet. 64: 259-267.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 259-267
    • Fulker, D.W.1    Cherny, S.S.2    Sham, P.C.3    Hewitt, J.K.4
  • 9
    • 0001234878 scopus 로고
    • A mixed model analysis of data on multiple genetic markers
    • GODDARD, M. E., 1992 A mixed model analysis of data on multiple genetic markers. Theor. Appl. Genet. 83: 878-886.
    • (1992) Theor. Appl. Genet. , vol.83 , pp. 878-886
    • Goddard, M.E.1
  • 10
    • 0027978110 scopus 로고
    • The diastrophic dysplasia gene encodes a novel sulfate transporter: Positional cloning by finestructure linkage disequilibrium mapping
    • HASTBACKA, J., A. DE LA CHAPELLE, M. M. MAHTANI, G. CLINES, M. P. REEVE-DALY et al., 1994 The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by finestructure linkage disequilibrium mapping. Cell 78: 1073-1087.
    • (1994) Cell , vol.78 , pp. 1073-1087
    • Hastbacka, J.1    De La Chapelle, A.2    Mahtani, M.M.3    Clines, G.4    Reeve-Daly, M.P.5
  • 11
    • 0030833349 scopus 로고    scopus 로고
    • Markov Chain Monte Carlo segregation and linkage analysis for oligogenic models
    • HEATH, S. C., 1997 Markov Chain Monte Carlo segregation and linkage analysis for oligogenic models. Am. J. Hum. Genet. 61: 748-760.
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 748-760
    • Heath, S.C.1
  • 12
    • 0023430504 scopus 로고
    • Gametic disequilibrium measures: Proceed with caution
    • HEDRICK, P. W., 1987 Gametic disequilibrium measures: proceed with caution. Genetics 117: 331-341.
    • (1987) Genetics , vol.117 , pp. 331-341
    • Hedrick, P.W.1
  • 14
    • 0036241779 scopus 로고    scopus 로고
    • A note on estimating the posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample
    • HOTI, F. J., M. J. SILLANPAA and L. HOLMSTROM, 2002 A note on estimating the posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample. Genet. Epidemiol. 22: 369-376.
    • (2002) Genet. Epidemiol. , vol.22 , pp. 369-376
    • Hoti, F.J.1    Sillanpaa, M.J.2    Holmstrom, L.3
  • 15
    • 0021909851 scopus 로고
    • The sampling distribution of linkage disequilibrium under an infinite alleles model without selection
    • HUDSON, R. R., 1985 The sampling distribution of linkage disequilibrium under an infinite alleles model without selection. Genetics 109: 611-631.
    • (1985) Genetics , vol.109 , pp. 611-631
    • Hudson, R.R.1
  • 16
    • 0001013743 scopus 로고
    • Application of Gibbs sampling for inference in a mixed major genepolygenic inheritance model in animal populations
    • JANSS, L. L. G., R. THOMPSON and J. A. VAN ARENDONK, 1995 Application of Gibbs sampling for inference in a mixed major genepolygenic inheritance model in animal populations. Theor. Appl. Genet. 91: 1137-1147.
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 1137-1147
    • Janss, L.L.G.1    Thompson, R.2    Van Arendonk, J.A.3
  • 17
    • 0028834034 scopus 로고
    • Likelihood methods for locating disease genes in nonequilibrium populations
    • KAPLAN, N., W. G. HILL and B. S. WEIR, 1995 Likelihood methods for locating disease genes in nonequilibrium populations. Am. J. Hum. Genet. 56: 18-32.
    • (1995) Am. J. Hum. Genet. , vol.56 , pp. 18-32
    • Kaplan, N.1    Hill, W.G.2    Weir, B.S.3
  • 18
    • 0023796209 scopus 로고
    • On measures of gametic disequilibrium
    • LEWONTIN, R. C., 1988 On measures of gametic disequilibrium. Genetics 120: 849-852.
    • (1988) Genetics , vol.120 , pp. 849-852
    • Lewontin, R.C.1
  • 19
    • 0034761849 scopus 로고    scopus 로고
    • Bayesian analysis of haplotypes for linkage disequilibrium mapping
    • LIU, J. S., C. SABATTI, J. TENG, B. J. KEATS and N. RISCH, 2001 Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 11: 1716-1724.
    • (2001) Genome Res. , vol.11 , pp. 1716-1724
    • Liu, J.S.1    Sabatti, C.2    Teng, J.3    Keats, B.J.4    Risch, N.5
  • 21
    • 0033358667 scopus 로고    scopus 로고
    • Assessement of linkage disequilibrium by the decay of haplotype sharing, with application to fine scale genetic mapping
    • MCPEEK, M. S., and A. STRAHS, 1999 Assessement of linkage disequilibrium by the decay of haplotype sharing, with application to fine scale genetic mapping. Am. J. Hum. Genet. 65: 858-875.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 858-875
    • Mcpeek, M.S.1    Strahs, A.2
  • 22
    • 0034055765 scopus 로고    scopus 로고
    • Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci
    • MEUWISSEN, T. H. E., and M. E. GODDARD, 2000 Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci. Genetics 155: 421-430.
    • (2000) Genetics , vol.155 , pp. 421-430
    • Meuwissen, T.H.E.1    Goddard, M.E.2
  • 23
    • 0035543447 scopus 로고    scopus 로고
    • Prediction of identity by descent probabilities from marker-haplotypes
    • MEUWISSEN, T. H., and M. E. GODDARD, 2001 Prediction of identity by descent probabilities from marker-haplotypes. Genet. Sel. Evol. 33: 605-634.
    • (2001) Genet. Sel. Evol. , vol.33 , pp. 605-634
    • Meuwissen, T.H.1    Goddard, M.E.2
  • 24
    • 0036259757 scopus 로고    scopus 로고
    • Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping
    • MEUWISSEN, T. H., A. KARLSEN, S. LIEN, I. OLSAKER and M. E. GODDARD, 2002 Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics 161: 373-379.
    • (2002) Genetics , vol.161 , pp. 373-379
    • Meuwissen, T.H.1    Karlsen, A.2    Lien, S.3    Olsaker, I.4    Goddard, M.E.5
  • 25
    • 0033910724 scopus 로고    scopus 로고
    • Bayesian fine-scale mapping of disease loci, by hidden Markov models
    • MORRIS, A. P., J. C. WHITAKER and D. J. BALDING, 2000 Bayesian fine-scale mapping of disease loci, by hidden Markov models. Am. J. Hum. Genet. 67: 155-169.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 155-169
    • Morris, A.P.1    Whitaker, J.C.2    Balding, D.J.3
  • 26
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • MORRIS, A. P., J. C. WHITTAKER and D. J. BALDING, 2002 Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70: 686-707.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 27
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: What history has to tell us
    • NORDBORG, M., and S. TAVARÉ, 2002 Linkage disequilibrium: what history has to tell us. Trends Genet. 18: 83-90.
    • (2002) Trends Genet. , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavaré, S.2
  • 28
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • PRITCHARD, J. K., and M. PRZEWORSKI, 2001 Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet. 69: 1-14.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 30
    • 13044305985 scopus 로고    scopus 로고
    • Fine-mapping of quantitative trait loci by identity by descent in outbred populations: Application to milk production in dairy cattle
    • RIQUET, J., W. COPPIETERS, N. CAMBISANO, J. J. ARRANZ, P. BERZI et al., 1999 Fine-mapping of quantitative trait loci by identity by descent in outbred populations: application to milk production in dairy cattle. Proc. Natl. Acad. Sci. USA 96: 9252-9257.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9252-9257
    • Riquet, J.1    Coppieters, W.2    Cambisano, N.3    Arranz, J.J.4    Berzi, P.5
  • 31
    • 0029836368 scopus 로고    scopus 로고
    • A Bayesian approach to detect quantitative trait loci using Markov chain Monte Carlo
    • SATAGOPAN, J. M., B. S. YANDELL, M. A. NEWTON and T. C. OSBORN, 1996 A Bayesian approach to detect quantitative trait loci using Markov chain Monte Carlo. Genetics 144: 805-816.
    • (1996) Genetics , vol.144 , pp. 805-816
    • Satagopan, J.M.1    Yandell, B.S.2    Newton, M.A.3    Osborn, T.C.4
  • 32
    • 0031961421 scopus 로고    scopus 로고
    • Bayesian mapping of multiple quantitative trait loci from incomplete inbred line cross data
    • SILLANPAA, M. J., and E. ARJAS, 1998 Bayesian mapping of multiple quantitative trait loci from incomplete inbred line cross data. Genetics 148: 1373-1388.
    • (1998) Genetics , vol.148 , pp. 1373-1388
    • Sillanpaa, M.J.1    Arjas, E.2
  • 34
    • 0028968329 scopus 로고
    • A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci
    • TERWILLIGER, J. D., 1995 A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci. Am. J. Hum. Genet. 56: 777-787.
    • (1995) Am. J. Hum. Genet. , vol.56 , pp. 777-787
    • Terwilliger, J.D.1
  • 35
    • 0032403973 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of complex disease: Fantasy or reality?
    • TERWILLIGER, J. D., and K. M. WEISS, 1998 Linkage disequilibrium mapping of complex disease: Fantasy or reality? Curr. Opin. Biotechnol. 9: 578-594.
    • (1998) Curr. Opin. Biotechnol. , vol.9 , pp. 578-594
    • Terwilliger, J.D.1    Weiss, K.M.2
  • 36
    • 84972506925 scopus 로고
    • Monte Carlo likelihood in genetic mapping
    • THOMPSON, E. A., 1994 Monte Carlo likelihood in genetic mapping. Stat. Sci. 9: 355-366.
    • (1994) Stat. Sci. , vol.9 , pp. 355-366
    • Thompson, E.A.1
  • 37
    • 0030914024 scopus 로고    scopus 로고
    • Mapping-linked quantitative trait loci using Bayesian analysis and Markov chain Monte Carlo algorithms
    • UIMARI, P., and I. HOESCHELE, 1997 Mapping-linked quantitative trait loci using Bayesian analysis and Markov chain Monte Carlo algorithms. Genetics 146: 735-743.
    • (1997) Genetics , vol.146 , pp. 735-743
    • Uimari, P.1    Hoeschele, I.2
  • 38
    • 0034752971 scopus 로고    scopus 로고
    • Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees
    • UIMARI, P., and M. J. SILLANPÄÄ, 2001 Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees. Genet. Epidemiol. 21: 224-242.
    • (2001) Genet. Epidemiol. , vol.21 , pp. 224-242
    • Uimari, P.1    Sillanpää, M.J.2
  • 39
    • 0003124559 scopus 로고
    • Marginal inferences about variance components in a mixed linear model using Gibbs sampling
    • WANG, C. S., J. J. RUTLEDGE and D. GIANOLA, 1993 Marginal inferences about variance components in a mixed linear model using Gibbs sampling. Genet. Sel. Evol. 25: 41-62.
    • (1993) Genet. Sel. Evol. , vol.25 , pp. 41-62
    • Wang, C.S.1    Rutledge, J.J.2    Gianola, D.3
  • 41
    • 0035105207 scopus 로고    scopus 로고
    • Joint linkage and linkage disequilibrium mapping in natural populations
    • WU, R., and Z-B. ZENG, 2001 Joint linkage and linkage disequilibrium mapping in natural populations. Genetics 157: 899-909.
    • (2001) Genetics , vol.157 , pp. 899-909
    • Wu, R.1    Zeng, Z.-B.2
  • 42
    • 0033809735 scopus 로고    scopus 로고
    • Combined linkage and linkage disequilibrium mapping for genome screens
    • XIONG, M., and L. JIN, 2000 Combined linkage and linkage disequilibrium mapping for genome screens. Genet. Epidemiol. 19: 211-234.
    • (2000) Genet. Epidemiol. , vol.19 , pp. 211-234
    • Xiong, M.1    Jin, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.