Metabolite profiling of germinating rice seeds

Journal of Agricultural and Food Chemistry

Volumn 56, Issue 24, 2008, Pages 11612-11620

  Shu, Xiao Li ^a,b   Frank, Thomas ^a   Shu, Qing Yao ^b   Engel, Karl Heinz ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

GC MS; Germination; Metabolite profiling; Oryza sativa L.; Rice

Indexed keywords

ORYZA SATIVA;

ARTICLE; CHEMISTRY; GERMINATION; MASS FRAGMENTOGRAPHY; METABOLOMICS; METHODOLOGY; PHYSIOLOGY; PLANT SEED; RICE;

GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GERMINATION; METABOLOMICS; ORYZA SATIVA; SEEDS;

EID: 58849110355     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf802671p     Document Type: Article

References (38)

1. Fiehn, O. Metabolomics - the link between genotypes and phenotypes. Plant Mol. Biol. 2002, 48, 155-171.
2. Allwood, J. W.; Ellis, D. I.; Goodacre, R. Metabolomic technologies and their application to the study of plants and plant-host interactions. Physiol. Planta. 2008, 132, 117-135.
3. Kopka, J.; Fernie, A.; Weckwerth, W.; Gibon, Y.; Stitt, M. Metabolite profiling in plant biology: platforms and destinations. Genome Biol. 2004, 5, 109.
4. Steinhauser, D.; Kopka, J. Methods, applications and concepts of metabolite profiling: primary metabolism. In Plant Systems Biology; Baginsky, S., Fernie, R., Eds.; Birkhäuser Verlag: Basel, Switzerland, 2007; pp 171-194.
5. Roessner, U.; Luedemann, A.; Brust, D.; Fiehn, O.; Linke, T.; Willmitzer, L; Fernie, A. R. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 2001, 13, 11-29.
6. Frank, T.; Seumo Meuleye, B.; Miller, A.; Shu, Q.-Y.; Engel, K.-H. Metabolite profiling of two low phytic acid (lpa) rice mutants. J. Agric. Food Chem. 2007, 55, 11011-11019.
7. Semel, Y.; Schauer, N.; Roessner, U.; Zamir, D.; Fernie, A. R. Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 2007, 3, 289-295.
8. Fait, A.; Angelovici, R.; Less, H.; Ohad, I.; Urbanczyk-Wochniak, E.; Fernie, A. R.; Galili, G. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol. 2006, 142, 839-854.
9. Fait, A.; Hanhineva, K.; Beleggia, R.; Dai, N.; Rogachev, H.; Nikiforova, V. J.; Fernie, A. R.; Aharoni, A. Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiol. 2008, 148, 730-750.
10. Tarpley, L.; Duran, A. L.; Kebrom, T. H.; Sumner, L. W. Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period. BMC Plant Biol. 2005, 5, 8.
11. Sato, S.; Arita, M.; Soga, T.; Nishioka, T.; Tomita, M. Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst. Biol. 2008, 2, 51.
12. Kusano, M.; Fukushima, A.; Kobayashi, M.; Hayashi, N.; Jonsson, P.; Moritz, T.; Ebana, K.; Saito, K. Application of metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. J. Chromatogr., B 2007, 855, 71-79.
13. Ito, S. Marketing of value-added rice products in Japan: germinated brown rice and rice bread. Food and Agricultural Organization FAO rice conference; Rome, Italy, 2004; http://www.fao.org/rice2004/en/pdf/ito.pdf, last accessed Oct 24, 2008.
14. Chen, Z.; Gu, Z.; Wang, Z.; Fang, W.; Duan, Y. Nutrition compositions of brown rice and its change during germination. Nanjing Nongye Daxue Xuebao 2003, 26, 84-87.
15. Komatsuzaki, N.; Tsukahara, K.; Toyoshima, H.; Suzuki, T.; Shimizu, N.; Kimura, T. Effect of soaking and gaseous treatment on GABA content in germinated brown rice. J. Food Eng. 2007, 78, 556-560.
16. Yang, P.; Li, X.; Wang, X.; Chen, H.; Shen, S. Proteomic analysis of rice (Oryza sativa) seeds during germination. Proteomics 2007, 7, 3358-3368.
17. Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmüller, E.; Dörmann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D. GMD@CSB.DB: the Golm metabolome database. Bioinformatics 2005, 21, 1635-1638.
18. Frenzel, T.; Miller, A.; Engel, K.-H. A methodology for automated comparative analysis of metabolite profiling data. Eur. Food Res. Technol. 2003, 216, 335-342; http://www.chrompare.com, last accessed Oct 24, 2008.
19. Moldenhauer, K. A. K.; Gibbons, J. H. Rice morphology and development. In Rice: Origin, History, Technology, And Production; Smith, C. W., Dilday, R. H., Eds.; Wiley: Hoboken, NJ, 2003; pp 103-127.
20. Frenzel, T.; Miller, A.; Engel, K.-H. Metabolite profiling - a fractionation method for analysis of major and minor compounds in rice grains. Cereal Chem. 2002, 79, 215-221.
21. Fiehn, O.; Kopka, J.; Trethewey, R. N.; Willmitzer, L. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Anal. Chem. 2000, 72, 3573-3580.
22. Roessner, U.; Wagner, C.; Kopka, J.; Trethewey, R. N.; Willmitzer, L. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J. 2000, 23, 131-142.
23. Xu, Z.; Godber, J. S. Purification and identification of components of γ-oryzanol in rice bran oil. J. Agric. Food Chem. 1999, 47, 2724-2728.
24. Kamal-Eldin, A.; Appelqvist, L. A.; Yousif, G.; Iskander, G. M. Seed lipids of Sesamum indicum and related wild species in Sudan. The sterols. J. Sci. Food Agric. 1992, 59, 327-334.
25. Narziss, L. Die Bierbrauerei. Die Technologie der Malzbereitung; Ferdinand Enke Verlag: Stuttgart, Germany, 1999.
26. Maniñgat, C. C.; Juliano, B. O. Starch lipids and their effect on rice starch properties. Starch/Staerke 1980, 32, 76-82.
27. Chandrasiri, V.; Bau, H. M.; Villaume, C.; Giannangeli, F.; Méjean, L. Effect of germinated and heated soybean meals on plasma cholesterol and triglycerides in rats. Reprod. Nutr. Dev. 1990, 30, 611-618.
28. Bush, P. B.; Grunwald, C. Sterol changes during germination of Nicotiana tabacum seeds. Plant Physiol. 1972, 50, 69-72.
29. Wang, Y.; Han, Y.; Jiang, Z.; Gu, Z. Effect of temperature on physiological activities, γ-aminobutyric acid and other essential substances in germinating brown rice. Zhongguo Liangyou Xuebao 2006, 21, 19-22.
30. South, J. B. Changes in organic acid levels during malting. J. Inst. Brew. 1996, 102, 161-166.
31. Saikusa, T.; Horino, T.; Mori, Y. Distribution of free amino acids in the rice kernel and kernel fractions and the effect of water soaking on the distribution. J. Agric. Food Chem. 1994, 42, 1122-1125.
32. Tkachuk, R. Free amino acids in germinated wheat. J. Sci. Food Agric. 1979, 30, 53-58.
33. Saikusa, T.; Horino, T.; Mori, Y. Accumulation of γ-aminobutyric acid (Gaba) in the rice germ during water soaking. Biosci., Biotechnol., Biochem. 1994, 58, 2291-2292.
34. Ohtsubo, K.; Suzuki, K.; Yasui, Y.; Kasumi, T. Bio-functional components in the processed pre-germinated brown rice by a twin-screw extruder. J. Food Compos. Anal. 2005, 18, 303-316.
35. Kusano, T.; Yamaguchi, K.; Berberich, T.; Takahashi, Y. Advances in polyamine research in 2007. J. Plant Res. 2007, 120, 345-350.
36. Önal, A. A review: current analytical methods for the determination of biogenic amines in foods. Food Chem. 2007, 103, 1475-1486.
37. Schauer, N.; Zamir, D.; Fernie, A. R. Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. J. Exp. Bot. 2005, 410, 297-307.
38. Cellini, F.; Chesson, A.; Colquhoun, I.; Constable, A.; Davies, H. V.; Engel, K.-H.; Gatehouse, A. M. R.; Kärenlampi, S.; Kok, E. J.; Leguay, J.-J.; Lehesranta, S.; Noteborn, H. P. J. M.; Pedersen, J.; Smith, M. Unintended effects and their detection in genetically modified crops. Food Chem. Toxicol. 2004, 42, 1089-1125.