Arabidopsis seed development and germination is associated with temporally distinct metabolic switches

Plant Physiology

Volumn 142, Issue 3, 2006, Pages 839-854

  Fait, Aaron ^a   Angelovici, Ruthie ^a   Less, Hadar ^a   Ohad, Itzhak ^b   Urbanczyk Wochniak, Ewa ^c   Fernie, Alisdair R ^c   Galili, Gad ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^b HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^c MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CULTIVATION; METABOLISM; RNA;

ARABIDOPSIS; METABOLIC NETWORKS; SEED DEVELOPMENT;

SEED;

CULTIVATION; METABOLISM; NUCLEIC ACIDS; SEEDS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33751093050     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.106.086694     Document Type: Article

References (71)

1. Alonso-Blanco C, Bentsink L, Hanhart C, Blankestijn-de Vries H, Koornneef M (2003) Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics 164: 711-729
2. Baud S, Boutin JP, Miquel M, Lepiniec L, Rochat C (2002) An integrated overview of seed development in Arabidopsis thaliana ecotype WS. Plant Physiol Biochem 40:151-160
3. Baud S, Graham IA (2006) A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry. Plant J 46:155-169
4. Baud S, Wuilleme S, Lemoine R, Kronenberger J, Caboche M, Lepiniec L, Rochat C (2005) The AtSUCS sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis. Plant J 43: 824-836
5. Baxter CJ, Carrari F, Bauke A, Overy S, Hill SA, Quick PW, Fernie AR, Sweetlove LJ (2005) Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant Cell Physiol 46: 425-437
6. Bender-Machado L, Bäuerlein M, Carrari F, Schauer N, Lytovchenko A, Gibon Y, Kelly A, Loureiro M, Müller-Röber B, Willmitzer L, et al (2004) Expression of a yeast acetyl CoA hydrolase in the mitochondrion. Plant Mol Biol 55: 645-662
7. Bewley JD (1997) Seed germination and dormancy. Plant Cell 9: 1055-1066
8. Bologa KL, Fernie AR, Leisse A, Ehlers LM, Geigenberger P (2003) A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiol 132: 2058-2072
9. Borisjuk L, Nguyen TH, Neuberger T, Rutten T, Tschiersch H, Claus B, Feussner I, Webb AG, Jakob P, Weber H, Wobus U, Rolletschek H (2005) Gradients of lipid storage, photosynthesis and plastid differentiation in developing soybean seeds. New Phytol 167: 761-776
10. Borisjuk L, Rolletschek H, Radchuk R, Weschke W, Wobus U, Weber H (2004) Seed development and differentiation: a role for metabolic regulation. Plant Biol 6: 375-386
11. Braybrook SA, Stone SL, Park S, Bui AQ, Le BH, Fischer RL, Goldberg RB, Harada JJ (2006) Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc Natl Acad Sci USA 103: 3468-3473
12. Brocard-Gifford IM, Lynch TJ, Finkelstein RR (2003) Regulatory networks in seeds: integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiol 131: 78-92
13. Campanella JJ, Olajide AF, Magnus V, Ludwig-Muller J (2004) A novel auxin conjugate hydrolase from wheat with substrate specificity for longer side-chain auxin amide conjugates. Plant Physiol 135: 2230-2240
14. Catoni E, Schwab R, Hilpert M, Desimone M, Schwacke R, Flugge U-I, Schumacher K, Frommer WB (2003) Identification of an Arabidopsis mitochondrial succinate-fumarate translocator. FEBS Lett 534: 87-92
15. Cernac A, Benning C (2004) WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J 40: 575-585
16. Chia TYP, Pike MJ, Rawsthorne S (2005) Storage oil breakdown during embryo development of Brassica napus (L.). J Exp Bot 56: 1285-1296
17. Eastmond PJ, Graham IA (2001) Re-examining the role of the glyoxylate cycle in oilseeds. Trends Plant Sci 6: 72-78
18. Eastmond PJ, Graham IA (2003) Trehalose metabolism: a regulatory role for trehalose-6-phosphate? Curr Opin Plant Biol 6: 231-235
19. Eastmond PJ, Rawsthorne S (2000) Coordinate changes in carbon partitioning and plastidial metabolism during the development of oilseed rape embryos. Plant Physiol 122: 767-774
20. Fernie AR, Carrari F, Sweetlove LJ (2004a) Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Curr Opin Plant Biol 7: 254-261
21. Fernie AR, Trethewey RN, Krotzky AJ, Willmitzer L (2004b) Metabolite profiling: from diagnostics to systems biology. Nat Rev Mol Cell Biol 5: 763-769
22. Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L (2000) Metabolite profiling for plant functional genomics. Nat Biotechnol 18: 1157-1161
23. Focks N, Benning C (1998) Wrinkled1: a novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol 118: 91-101
24. Geigenberger P (2003) Response of plant metabolism to too little oxygen. Curr Opin Plant Biol 6: 247-256
25. Genty E, Briantais JM, Baker NR (1989) The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim Biophys Acta 990: 87-92
26. Girke T, Todd J, Ruuska S, White J, Benning C, Ohlrogge J (2000) Microarray analysis of developing Arabidopsis seeds. Plant Physiol 124: 1570-1581
27. Glawischnig E, Hansen BG, Olsen CE, Halkier BA (2004) Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis. Proc Natl Acad Sci USA 101: 8245-8250
28. Goffman FD, Alonso AP, Schwender J, Shachar-Hill Y, Ohlrogge JB (2005) Light enables a very high efficiency of carbon storage in developing embryos of rapeseed. Plant Physiol 138: 2269-2279
29. Gomez LD, Baud S, Gilday A, Li Y, Graham IA (2006) Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation. Plant J 46: 69-84
30. Gómez LD, Baud S, Graham A (2005) The role of trehalose-6- phosphate synthase in Arabidopsis embryo development. Biochem Soc Trans 33: 280-282
31. Hajduch M, Ganapathy A, Stein JW, Thelen JJ (2005) A systematic proteomic study of seed filling in soybean: establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Plant Physiol 137: 1397-1419
32. Hobbs DH, Flintham JE, Hills MJ (2004) Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiol 136: 3341-3349
33. Hull AK, Vij R, Celenza JL (2000) Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis. Proc Natl Acad Sci USA 97: 2379-2384
34. Job C, Rajjou L, Lovigny Y, Belghazi M, Job D (2005) Patterns of protein oxidation in Arabidopsis seeds and during germination. Plant Physiol 138: 790-802
35. Junker BH, Wuttke R, Tiessen A, Geigenberger P, Sonnewald U, Willmitzer L, Fernie AR (2004) Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex meta-bolic phenotype obtained following its constitutive expression. Plant Mol Biol 56: 91-110
36. Katavic V, Reed DW, Taylor DC, Giblin EM, Barton DL, Zou J, MacKenzie SL, Covello PS, Kunst L (1995) Alteration of seed fatty acid composition by an ethyl methanesulfonate-induced mutation in Arabidopsis thaliana affecting diacylglycerol acyltransferase activity. Plant Physiol 108: 399-409
37. Kaushik JK, Bhat R (2003) Why is trehalose an exceptional protein stabilizer? An analysis of the thermal stability of proteins in the presence of the compatible osmolyte trehalose. J Biol Chem 278: 26458-26465
38. Klughammer C, Schreiber U (1994) An improved method, using saturating light pulses, for the determination of photosystem I quantum yield via P700+-absorbance changes at 830 nm. Planta 192: 261-268
39. Lea PJ, Ireland RJ (1999) Nitrogen metabolism in higher plants. In B Singh, ed, Plant Amino Acids: Biochemistry and Biotechnology. Marcel Dekker, New York, pp 1-47
40. Lin Y, Cluette-Brown JE, Goodman HM (2004) The peroxisome deficient Arabidopsis mutant sse1 exhibits impaired fatty acid synthesis. Plant Physiol 135: 814-827
41. Lu C, Hills MJ (2002) Arabidopsis mutants deficient in diacylglycerol acyltransferase display increased sensitivity to abscisic acid, sugars, and osmotic stress during germination and seedling development. Plant Physiol 129: 1352-1358
42. Normanly J (1997) Auxin metabolism. Physiol Plant 100: 431-442
43. Penfield S, Graham S, Graham I (2005) Storage reserve mobilization in germinating oilseeds: Arabidopsis as a model system. Biochem Soc Trans 33: 380-383
44. Piotrowski M, Schemenewitz A, Lopukhina A, Muller A, Janowitz T, Weiler EW, Oecking C (2004) Desulfoglucosinolate sulfotransferases from Arabidopsis thaliana catalyze the final step in the biosynthesis of the glucosinolate core structure. J Biol Chem 279: 50717-50725
45. Pritchard SL, Charlton WL, Baker A, Graham IA (2002) Germination and storage reserve mobilization are regulated independently in Arabidopsis. Plant J 31: 639-647
46. Raghavendra AS, Padmasree K (2003) Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation. Trends Plant Sci 8: 546-553
47. Ravanel S, Block MA, Rippert P, Jabrin S, Curien G, Rebeille F, Douce R (2004) Methionine metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can import s-adenosylmethionine from the cytosol. J Biol Chem 279: 22548-22557
48. Roessner U, Luedemann A, Brust D, Fiehn O, Linke T, Willmitzer L, Fernie R (2001) Metabolic profiling and phenotyping of genetically and environmentally modified systems. Plant Cell 13: 11-29
49. Roessner-Tunali U, Hegemann B, Lytovchenko A, Carrari F, Bruedigam C, Granot D, Fernie AR (2003) Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol 133: 84-99
50. Rolletschek H, Radchuk R, Klukas C, Schreiber F, Wobus U, Borisjuk L (2005) Evidence of a key role for photosynthetic oxygen release in oil storage in developing soybean seeds. New Phytol 167: 777-786
51. Rolletschek H, Weber H, Borisjuk L (2003) Energy status and its control on embryogenesis of legumes: embryo photosynthesis contributes to oxygen supply and is coupled to biosynthetic fluxes. Plant Physiol 132: 1196-1206
52. Ruuska SA, Girke T, Benning C, Ohlrogge JB (2002) Contrapuntal networks of gene expression during Arabidopsis seed filling. Plant Cell 14: 1191-1206
53. Ruuska SA, Ohlrogge JB (2001) Protocol for small-scale RNA isolation and transcriptional profiling of developing Arabidopsis seeds. Biotechniques 31: 752-754, 756-758
54. Ruuska SA, Schwender J, Ohlrogge JB (2004) The capacity of green oilseeds to utilize photosynthesis to drive biosynthetic processes. Plant Physiol 136: 2700-2709
55. Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, et al (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378
56. Sattler SE, Gilliland LU, Magallanes-Lundback M, Pollard M, DellaPenna D (2004) Vitamin E is essential for seed longevity and for preventing lipid peroxidation during germination. Plant Cell 16: 1419-1432
57. Schauer N, Steinhauser D, Strelkov S, Schomburg D, Allison G, Moritz T, Lundgren K, Roessner-Tunali U, Forbes M, Willmitzer L, et al (2005) GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett 579: 1332-1337
58. Schluepmann H, van Dijken A, Aghdasi M, Wobbes B, Paul M, Smeekens S (2004) Trehalose mediated growth inhibition of Arabidopsis seedlings is due to trehalose-6-phosphate accumulation. Plant Physiol 135: 879-890
59. Scholz M, Gatzek S, Sterling A, Fiehn O, Selbig J (2004) Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinformatics 20: 2447-2454
60. Sessa RA, Bennett MH, Lewis MJ, Mansfield JW, Beale MH (2000) Metabolite profiling of sesquiterpene lactones from lactuca species: major latex components are novel oxalate and sulfate conjugates of lactucin and its derivatives. J Biol Chem 275: 26877-26884
61. Sharaf EF, Farrag AA (2004) Induced resistance in tomato plants by IAA against Fusarium oxysporum lycopersici. Pol J Microbiol 53: 111-116
62. Slavov S, van Onckelen H, Batchvarova R, Atanassov A, Prinsen E (2004) IAA production during germination of Orobanche spp. seeds. J Plant Physiol 161: 847-853
63. Sumner LW, Mendes P, Dixon RA (2003) Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry 62: 817-836
64. van Hellemond JJ, van der Klei A, van Weelden SWH, Tielens AGM (2003) Biochemical and evolutionary aspects of anaerobically function-ing mitochondria. Philos Trans R Soc Lond B Biol Sci 358: 205-215
65. Vigeolas H, Mohlmann T, Martini N, Neuhaus HE, Geigenberger P (2004) Embryo-specific reduction of ADP-Glc pyrophosphorylase leads to an inhibition of starch synthesis and a delay in oil accumulation in developing seeds of oilseed rape. Plant Physiol 136: 2676-2686
66. Voelker T, Kinney AJ (2001) Variations in the biosynthesis of seed-storage lipids. Annu Rev Plant Physiol Plant Mol Biol 52: 335-361
67. Walket RP, Chen ZH, Tecsi LI, Famiani F, Lea PJ, Leegood RC (1999) Phosphoenolpyruvate carboxykinase plays a role in interactions of carbon and nitrogen metabolism during grape seed development. Planta 210: 9-18
68. Weber H, Borisjuk L, Wobus U (2005) Molecular physiology of legume seed development. Annu Rev Plant Biol 56: 253-279
69. White JA, Todd J, Newman T, Focks N, Girke T, de Ilarduya OM, Jaworski JG, Ohlrogge JB, Benning C (2000) A new set of Arabidopsis expressed sequence tags from developing seeds: the metabolic pathway from carbohydrates to seed oil. Plant Physiol 124: 1582-1594
70. Wobus U, Weber H (1999) Seed maturation: genetic programmes and control signals. Curr Opin Plant Biol 2: 33-38
71. Zuo J, Niu Q-W, Chua N-H (2000) An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants. Plant J 24: 265-273