Short-term under-ice variability of prokaryotic plankton communities in coastal Antarctic waters (Cape Hallett, Ross Sea)

Estuarine, Coastal and Shelf Science

Volumn 81, Issue 4, 2009, Pages 491-500

  Celussi, Mauro ^a   Paoli, Alessandro ^a   Crevatin, Erica ^a   Bergamasco, Andrea ^b   Margiotta, Francesca ^c   Saggiomo, Vincenzo ^c   Umani, Serena Fonda ^d   Del Negro, Paola ^a  

^a ISTITUTO NAZIONALE DI OCEANOGRAFIA E DI GEOFISICA SPERIMENTALE OGS   (Italy)

^b INSTITUTE OF MARINE SCIENCES   (Italy)

^c STAZIONE ZOOLOGICA ANTON DOHRN   (Italy)

^d UNIVERSITY OF TRIESTE   (Italy)

Author keywords

Archaea; Bacteria; biogeochemical processes; Flavobacteria; PCR DGGE; Ross Sea

Indexed keywords

ABUNDANCE; COASTAL WATER; COMMUNITY DYNAMICS; COMMUNITY STRUCTURE; ENZYME ACTIVITY; ICE; PLANKTON; PROKARYOTE;

ANTARCTICA; CAPE HALLETT; EAST ANTARCTICA; ROSS SEA; SOUTHERN OCEAN;

ARCHAEA; BACTERIA (MICROORGANISMS); FLAVOBACTERIA; OTUS; PROKARYOTA;

EID: 58849089223     PISSN: 02727714     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecss.2008.12.014     Document Type: Article

References (56)

1. Abell G.C.J., and Bowman J.P. Ecological and biogeographic relationship of class Flavobacteria in the Southern Ocean. FEMS Microbiology Ecology 51 (2005) 265-277
2. Ackley S.F., and Sullivan C.W. Physical controls on the development and characteristics of Antarctic sea ice biological communities - a review and synthesis. Deep-Sea Research I 41 (1994) 1583-1604
3. Alonso-Sáez L., and Gasol J.M. Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in Northwestern Mediterranean coastal waters. Applied and Environmental Microbiology 73 (2007) 3528-3535
4. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
5. Azam F. Microbial control of oceanic carbon flux: the plot thickens. Science 280 (1998) 694-696
6. Bano N., Ruffin S., Ransom B., and Hollibaugh J.T. Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages. Applied and Environmental Microbiology 70 (2004) 781-789
7. Bergamasco A., Defendi V., Del Negro P., and Fonda Umani S. Effects of the physical properties of water masses on microbial activity during Ice Shelf Water overflow in the central Ross Sea. Antarctic Science 15 (2003) 405-411
8. Biddanda B., and Benner R. Carbon, nitrogen and carbohydrate fluxes during the production of particulate and dissolved organic matter by marine phytoplankton. Limnology and Oceanography 42 (1997) 506-518
9. Booth M.G., Hutchinson L., Brumsted M., Aas P., Coffin R.B., Downer R.C., Kelley C.A., Lyons M.M., Pakulski J.D., Holder Sandvik S.L., Jeffrey W.H., and Miller R.V. Quantification of recA gene expression as an indicator of repair potential in marine bacterioplankton communities of Antarctica. Aquatic Microbial Ecology 24 (2001) 51-59
10. Boström K.H., Simu K., Hagström, Å., and Riemann L. Optimization of DNA extraction for quantitative marine bacterioplankton community analysis. Limnology and Oceanography: Methods 2 (2004) 365-373
11. Catalano G., Povero P., Fabiano M., Benedetti F., and Goffart A. Nutrient utilisation and particulate organic matter changes during summer in the upper mixed layer (Ross Sea, Antarctica). Deep-Sea Research I 44 (1997) 97-112
12. Cauwet G. HTCO method for dissolved organic carbon analysis in seawater: influence of catalyst on blank estimation. Marine Chemistry 47 (1994) 55-64
13. Celussi M., and Cataletto B. Annual dynamics of bacterioplankton assemblages in the Gulf of Trieste (Northern Adriatic Sea). Gene 406 (2007) 113-123
14. Celussi M., Paoli A., Bernardi Aubry F., Bastianini M., and Del Negro P. Diel microbial variations at a coastal Northern Adriatic station affected by Po River outflows. Estuarine Coastal and Shelf Science 76 (2008) 36-44
15. Church M.J., DeLong E.F., Ducklow H.W., Karner M.B., Preston C.M., and Karl D.M. Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula. Limnology and Oceanography 48 (2003) 1893-1902
16. Delille D., and Cahet G. Short-term changes of marine bacterioplankton in Antarctic coastal environment. Estuarine Coastal and Shelf Science 33 (1991) 581-588
17. Delille D., Bouvy M., and Cahet G. Short-tem variations of bacterioplankton in Antarctic zone: Terre Adelie area. Microbial Ecology 15 (1988) 293-309
18. Dickey T.D. The emergence of concurrent high-resolution physical and bio-optical measurements in the upper ocean and their applications. Reviews of Geophysics 29 (1991) 383-413
19. Ducklow H., Carlson C., Church M., Kirchman D., Smith D., and Steward G. The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994-1997. Deep-Sea Research II 48 (2001) 4199-4221
20. Finocchiaro F., Langone L., Colizza E., Fontolan G., Giglio F., and Tuzzi E. Record of the early Holocene warming in a laminated sediment core from Cape Hallett Bay (Northern Victoria Land, Antarctica). Global Planet Change 45 (2005) 193-206
21. Fuhrman J.A., Eppley R.W., Hagström A., and Azam F. Diel variations in bacterioplankton, phytoplankton and related parameters in the Southern California Bight. Marine Ecology Progress Series 27 (1985) 9-20
22. Gasol J.M., Doval M.D., Phinassi J., Calderón-Paz J.L., Guixa-Boixareu N., Vaque D., and Pedrós-Alió C. Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea. Marine Ecology Progress Series 164 (1998) 107-124
23. Gentile G., Giuliano L., D'Auria G., Smedile F., Azzaro M., De Domenico M., and Yakimov M.M. Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing. Environmental Microbiology 8 (2006) 2150-2161
24. Holm-Hansen O., Lorenzen C.J., Holmes R.W., and Strickland J.D.H. Fluorometric determination of chlorophyll. Journal du Conseil Permermanent International pour l'Exploration de la Mer 30 (1965) 3-15
25. Hoppe H.G. Use of fluorogenic model substrates for extracellular enzyme activity (EEA) measurement of bacteria. In: Kemp P.F., Sherr B.F., Sherr E.B., and Cole J.J. (Eds). Current Methods in Aquatic Microbial Ecology (1993), CRC Press, Boca Raton 423-431
26. Huber F., and Peduzzi P. Online tool for analysis of denaturing gradient gel electrophoresis profiles. Applied and Environmental Microbiology 70 (2004) 4390-4392
27. Hyun J.-H., Choi J.K., Chung K.H., Yang E.-J., and Kim M.-K. Tidally induced changes in bacterial growth and viability in the macrotidal Han River estuary, Yellow Sea. Estuarine Coastal and Shelf Science 48 (1999) 143-153
28. Karl D. Microbial processes in the Southern Ocean. In: Friedman E.I. (Ed). Antarctic Microbiology (1993), Wiley-Liss, New York 1-63
29. Kirchman D.L. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiology Ecology 39 (2002) 91-100
30. Kirchman D.L., K'nees E., and Hodson R.E. Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural systems. Applied and Environmental Microbiology 49 (1985) 599-607
31. Koroleff F., and Grasshof K. Determination of nutrients. In: Grasshof K., Erhardt M., and Kremling K. (Eds). Methods of Seawater Analyses (1983), Verlag Chemie, Weinheim 125-188
32. Legendre P., and Legendre L. Numerical Ecology. second ed. (1998), Elsevier, Amsterdam
33. Leventer A. Particulate flux from sea ice in Polar waters. In: Thomas D.N., and Dieckmann G.S. (Eds). Sea Ice (2003), Blackwell Publishing, Oxford 303-332
34. Marrasé C., Lin E.L., and Caron D.A. Seasonal and daily changes in bacterivory in a coastal plankton community. Marine Ecology Progress Series 82 (1992) 281-289
35. Misic C., Povero P., and Fabiano M. Ectoenzymatic ratios in relation to particulate organic matter distribution (Ross Sea, Antarctica). Microbial Ecology 44 (2002) 224-234
36. Morán X.A.G., Bode A., Suárez L.A., and Nogueira E. Assessing the relevance of nucleic acid content as an indicator of marine bacterial activity. Aquatic Microbial Ecology 46 (2007) 141-152
37. Morel A., and Smith R.C. Relation between total quanta and total energy for aquatic photosynthesis. Limnology and Oceanography 19 (1974) 591-600
38. Murray A.E., and Grzymski J.J. Diversity and genomics of Antarctic marine micro-organisms. Philosophical Transaction of the Royal Society B 362 (2007) 2259-2271
39. Murray A.E., Wu K., Moyer D., Karl D.M., and DeLong E.F. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean. Aquatic Microbial Ecology 18 (1999) 263-273
40. Noble R.T., and Fuhrman J.A. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquatic Microbial Ecology 14 (1998) 113-118
41. Obernosterer I., and Herndl G.J. Phytoplankton extracellular release and bacterial growth: dependence on the inorganic N:P ratio. Marine Ecology Progress Series 116 (1995) 247-257
42. Paoli A., Karuza A., De Vittor C., Del Negro P., and Fonda Umani S. Daily variations of highly active bacteria in the Northern Adriatic Sea. Journal of Plankton Research 28 (2006) 325-335
43. Pearce D.A., and Wilson W.H. Viruses in Antarctic ecosystems. Antarctic Science 15 (2003) 319-331
44. Pearce I., Davidson A.T., Bell E.M., and Wright S. Seasonal changes in the concentration and metabolic activity of bacteria and viruses at an Antarctic coastal site. Aquatic Microbial Ecology 47 (2007) 11-23
45. Pedrós-Alió C. Marine microbial diversity: can it be determined?. Trends in Microbiology 14 (2006) 257-263
46. Pernthaler A., and Pernthaler J. Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters. Applied and Environmental Microbiology 71 (2005) 4638-4644
47. Porter K., and Feig Y.S. The use of DAPI for identify and counting aquatic microflora. Limnology and Oceanography 25 (1980) 943-948
48. Rink B., Seeberger S., Martens T., Duerselen C.-D., Simon M., and Brinkhoff T. Effect of phytoplankton bloom in a coastal ecosystem on the composition of bacterial communities. Aquatic Microbial Ecology 48 (2007) 47-60
49. Schauer M., Balagué V., Pedrós-Alió C., and Massana R. Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system. Aquatic Microbial Ecology 31 (2003) 163-174
50. Seymour J.R., Seuront L., and Mitchell J.G. Microscale and small-scale temporal dynamics of a coastal planktonic microbial community. Marine Ecology Progress Series 300 (2005) 21-37
51. 3H-leucine. Marine Microbial Food Webs 6 (1992) 107-114
52. Stabeno P.J., Schumacher J.D., Davis R.F., and Napp J.M. Under-ice observations of water column temperature, salinity and spring phytoplankton dynamics: Eastern Bering Sea shelf. Journal of Marine Research 56 (1998) 239-255
53. van Wambeke F., Goutx M., Striby L., Sempéré R., and Vidussi F. Bacterial dynamics during the transition from spring bloom to oligotrophy in the Northwestern Mediterranean Sea: relationships with particulate detritus and dissolved organic matter. Marine Ecology Progress Series 212 (2001) 89-105
54. Wikner J., Rassoulzadegan F., and Hagström Å. Periodic bacterivore activity balances bacterial growth in the marine environment. Limnology and Oceanography 35 (1990) 313-324
55. Wen K., Ortmann A.C., and Suttle C.A. Accurate estimation of viral abundance by epifluorescence microscopy. Applied and Environmental Microbiology 70 (2004) 3862-3867
56. Winter C., Herndl G.J., and Weinbauer M.G. Diel cycles in viral infection of bacterioplankton in the North Sea. Aquatic Microbial Ecology 35 (2004) 207-216