Bipyridine-modified oligonucleotides: Aggregation in the presence of metal ions

Inorganica Chimica Acta

Volumn 362, Issue 3, 2009, Pages 985-992

  Düpre, Nicole ^a   Welte, Lorena ^b   Gómez Herrero, Julio ^b   Zamora, Félix ^b   Müller, Jens ^a  

^a TU DORTMUND UNIVERSITY   (Germany)

^b UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

AFM; Bipyridine; DNA; Iron; Metal mediated base pair; Three way junction

Indexed keywords

DNA; IRON; LIGANDS; METAL IONS; MICA; OLIGONUCLEOTIDES; TRANSITION METALS;

BASE PAIRS; BIPYRIDINES; DNA-BASED NANOSTRUCTURES; HIGHLY ORDERED PYROLYTIC GRAPHITES; MODIFIED OLIGONUCLEOTIDES; OLIGONUCLEOTIDE SEQUENCES; THREE-WAY JUNCTION; TWO-DIMENSIONAL STRUCTURES;

IRON COMPOUNDS;

EID: 58849088510     PISSN: 00201693     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ica.2007.12.005     Document Type: Article

References (66)

1. Clever G.H., Kaul C., and Carell T. Angew. Chem., Int. Ed. 46 (2007) 6226
2. He W., Franzini R.M., and Achim C. Prog. Inorg. Chem. 55 (2007) 545
3. Shionoya M., and Tanaka K. Curr. Opin. Chem. Biol. 8 (2004) 592
4. Böhme D., Düpre N., Megger D.A., and Müller J. Inorg. Chem. 46 (2007) 10114
5. Polonius F.-A., and Müller J. Angew. Chem., Int. Ed. 46 (2007) 5602
6. Müller J., Freisinger E., Lax P., Megger D.A., and Polonius F.-A. Inorg. Chim. Acta 360 (2007) 255
7. Müller J., Böhme D., Düpre N., Mehring M., and Polonius F.-A. J. Inorg. Biochem. 101 (2007) 470
8. Müller J., Böhme D., Lax P., Morell Cerdà M., and Roitzsch M. Chem. Eur. J. 11 (2005) 6246
9. Müller J., Polonius F.-A., and Roitzsch M. Inorg. Chim. Acta 358 (2005) 1225
10. Tanaka K., Clever G.H., Takezawa Y., Yamada Y., Kaul C., Shionoya M., and Carell T. Nature Nanotechnol. 1 (2006) 190
11. Tanaka K., Tengeiji A., Kato T., Toyama N., and Shionoya M. Science 299 (2003) 1212
12. Tanaka K., Tengeiji A., Kato T., Toyama N., Shiro M., and Shionoya M. J. Am. Chem. Soc. 124 (2002) 12494
13. Tanaka K., Yamada Y., and Shionoya M. J. Am. Chem. Soc. 124 (2002) 8802
14. Cao H., Tanaka K., and Shionoya M. Chem. Pharm. Bull. 48 (2000) 1745
15. Tanaka K., and Shionoya M. J. Org. Chem. 64 (1999) 5002
16. Clever G.H., and Carell T. Angew. Chem., Int. Ed. 46 (2007) 250
17. Clever G.H., Söltl Y., Burks H., Spahl W., and Carell T. Chem. Eur. J. 12 (2006) 8708
18. Clever G.H., Polborn K., and Carell T. Angew. Chem., Int. Ed. 44 (2005) 7204
19. Zhang L., and Meggers E. J. Am. Chem. Soc. 127 (2005) 74
20. Zimmermann N., Meggers E., and Schultz P.G. Bioorg. Chem. 32 (2004) 13
21. Zimmermann N., Meggers E., and Schultz P.G. J. Am. Chem. Soc. 124 (2002) 13684
22. Atwell S., Meggers E., Spraggon G., and Schultz P.G. J. Am. Chem. Soc. 123 (2001) 12364
23. Meggers E., Holland P.L., Tolman W.B., Romesberg F.E., and Schultz P.G. J. Am. Chem. Soc. 122 (2000) 10714
24. Switzer C., and Shin D. Chem. Commun. (2005) 1342
25. Switzer C., Sinha S., Kim P.H., and Heuberger B.D. Angew. Chem., Int. Ed. 44 (2005) 1529
26. Shin D., and Switzer C. Chem. Commun. (2007) 4401
27. Brotschi C., and Leumann C.J. Nucleos. Nucleot. Nucl. 22 (2003) 1195
28. Weizman H., and Tor Y. J. Am. Chem. Soc. 123 (2001) 3375
29. Weizman H., and Tor Y. Chem. Commun. (2001) 453
30. Popescu D.-L., Parolin T.J., and Achim C. J. Am. Chem. Soc. 125 (2003) 6354
31. Watson R.M., Skorik Y.A., Patra G.K., and Achim C. J. Am. Chem. Soc. 127 (2005) 14628
32. Franzini R.M., Watson R.M., Patra G.K., Breece R.M., Tierney D.L., Hendrich M.P., and Achim C. Inorg. Chem. 45 (2006) 9798
33. Küsel A., Zhang J., Alvariño Gil M., Stückl A.C., Meyer-Klaucke W., Meyer F., and Diedrichsen U. Eur. J. Inorg. Chem. (2005) 4317
34. Ohr K., McLaughlin R.L., and Williams M.E. Inorg. Chem. 46 (2007) 965
35. Gilmartin B.P., Ohr K., McLaughlin R.L., Koerner R., and Williams M.E. J. Am. Chem. Soc. 127 (2005) 9546
36. Kuklenyik Z., and Marzilli L.G. Inorg. Chem. 35 (1996) 5654
37. Tanaka Y., Oda S., Yamaguchi H., Kondo Y., Kojima C., and Ono A. J. Am. Chem. Soc. 129 (2007) 244
38. Miyake Y., Togashi H., Tashiro M., Yamaguchi H., Oda S., Kudo M., Tanaka Y., Kondo Y., Sawa R., Fujimoto T., Machinami T., and Ono A. J. Am. Chem. Soc. 128 (2006) 2172
39. Ono A., and Togashi H. Angew. Chem., Int. Ed. 43 (2004) 4300
40. S. Johannsen, S. Paulus, N. Düpre, J. Müller, R.K.O. Sigel, J. Inorg. Biochem., in press, doi:10.1016/j.jinorgbio.2007.12.023.
41. Lee J.S., Latimer L.J.P., and Reid R.S. Biochem. Cell Biol. 71 (1993) 162
42. Aich P., Labiuk S.L., Tari L.W., Delbaere L.J.T., Roesler W.J., Falk K.J., Steer R.P., and Lee J.S. J. Mol. Biol. 294 (1999) 477
43. Porath D., Cuniberti G., and Di Felice R. Top. Curr. Chem. 237 (2004) 183
44. Carell T., Behrens C., and Gierlich J. Org. Biomol. Chem. 1 (2003) 2221
45. Müller J. Nature 444 (2006) 698
46. Rakitin A., Aich P., Papadopoulos C., Kobzar Y., Vedeneev A.S., Lee J.S., and Xu J.M. Phys. Rev. Lett. 86 (2001) 3670
47. Aich P., Skinner R.J.S., Wettig S.D., Steer R.P., and Lee J.S. J. Biomol. Struct. Dyn. 20 (2002) 93
48. Wettig S.D., Li C.-Z., Long Y.-T., Kraatz H.-B., and Lee J.S. Anal. Sci. 19 (2003) 23
49. Choi J.S., Kang C.W., Jung K., Yang J.W., Kim Y.G., and Han H. J. Am. Chem. Soc. 126 (2004) 8606
50. Stewart K.M., and McLaughlin L.W. Chem. Commun. (2003) 2934
51. Stewart K.M., Rojo J., and McLaughlin L.W. Angew. Chem., Int. Ed. 43 (2004) 5808
52. Bianké G., Chaurin V., Egorov M., Lebreton J., Constable E.C., Housecroft C.E., and Häner R. Bioconjugate Chem. 17 (2006) 1441
53. Göritz M., and Krämer R. J. Am. Chem. Soc. 127 (2006) 18016
54. Graf N., Göritz M., and Krämer R. Angew. Chem., Int. Ed. 45 (2006) 4013
55. Graf N., and Krämer R. Chem. Commun. (2006) 4375
56. Miyoshi D., Karimata H., Wang Z.-M., Koumoto K., and Sugimoto N. J. Am. Chem. Soc. 129 (2007) 5919
57. Ballardini R., Balzani V., Clemente-León M., Credi A., Gandolfi M.T., Ishow E., Perkins J., Stoddart J.F., Tseng H.-R., and Wegner S. J. Am. Chem. Soc. 124 (2002) 12786
58. Wichai U., and Woski S.A. Org. Lett. 1 (1999) 1173
59. Horcas I., Fernández R., Gómez-Rodríguez J.M., Colchero J., Gómez-Herrero J., and Baro A.M. Rev. Sci. Instrum. 78 (2007) 013705
60. Tereshko V., Minasov G., and Egli M. J. Am. Chem. Soc. 121 (1999) 470
61. Wing R., Drew H., Takano T., Broka C., Tanaka S., Itakura K., and Dickerson R.E. Nature 287 (1980) 755
62. Reese C.B., and Wu Q. Org. Biomol. Chem. 1 (2003) 3160
63. 2+ (see Ref. [56]).
64. Moreno-Herrero F., Colchero J., and Baró A.M. Ultramicroscopy 96 (2003) 167
65. The low resolution observed in the AFM topography image for the disc-shaped aggregates in Fig. 1b) is most likely due to a strong adhesion of these nanoobjects to the AFM tip.
66. Klinov D., Dwir B., Kapon E., Borovok N., Molotsky T., and Kotlyar A. Nanotechnology 18 (2007) 225102