-
1
-
-
2542442633
-
Transcriptional control of early B cell development
-
Busslinger M. Transcriptional control of early B cell development. Annu Rev Immunol 2004;22:55-79.
-
(2004)
Annu Rev Immunol
, vol.22
, pp. 55-79
-
-
Busslinger, M.1
-
2
-
-
36048993973
-
Sox17 and Sox4 differentially regulate β-catenin/T-cell factor activity and proliferation of colon carcinoma cells
-
Sinner D, Kordich JJ, Spence JR, et al. Sox17 and Sox4 differentially regulate β-catenin/T-cell factor activity and proliferation of colon carcinoma cells. Mol Cell Biol 2007;27:7802-15.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 7802-7815
-
-
Sinner, D.1
Kordich, J.J.2
Spence, J.R.3
-
3
-
-
0032538970
-
Sox4-deficiency syndrome in mice is an animal model for common trunk
-
Ya J, Schilham MW, de Boer PA, Moorman AF, Clevers H, Lamers WH. Sox4-deficiency syndrome in mice is an animal model for common trunk. Circ Res 1998;83:986-94.
-
(1998)
Circ Res
, vol.83
, pp. 986-994
-
-
Ya, J.1
Schilham, M.W.2
de Boer, P.A.3
Moorman, A.F.4
Clevers, H.5
Lamers, W.H.6
-
4
-
-
33644666565
-
The HMG box transcription factor Sox4 contributes to the development of the endocrine pancreas
-
Wilson ME, Yang KY, Kalousova A, et al. The HMG box transcription factor Sox4 contributes to the development of the endocrine pancreas. Diabetes 2005;54:3402-9.
-
(2005)
Diabetes
, vol.54
, pp. 3402-3409
-
-
Wilson, M.E.1
Yang, K.Y.2
Kalousova, A.3
-
5
-
-
34548552637
-
Osteopenia, decreased bone formation and impaired osteoblast development in Sox4 heterozygous mice
-
Nissen-Meyer LS, Jemtland R, Gautvik VT, et al. Osteopenia, decreased bone formation and impaired osteoblast development in Sox4 heterozygous mice. J Cell Sci 2007;120:2785-95.
-
(2007)
J Cell Sci
, vol.120
, pp. 2785-2795
-
-
Nissen-Meyer, L.S.1
Jemtland, R.2
Gautvik, V.T.3
-
6
-
-
34249007198
-
Prolonged glial expression of Sox4 in the CNS leads to architectural cerebellar defects and ataxia
-
Hoser M, Baader SL, Bosl MR, Ihmer A, Wegner M, Sock E. Prolonged glial expression of Sox4 in the CNS leads to architectural cerebellar defects and ataxia. J Neurosci 2007;27:5495-505.
-
(2007)
J Neurosci
, vol.27
, pp. 5495-5505
-
-
Hoser, M.1
Baader, S.L.2
Bosl, M.R.3
Ihmer, A.4
Wegner, M.5
Sock, E.6
-
7
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 2006;126:663-76.
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
8
-
-
0033015698
-
Regulation of the expression and activity by progestins of a member of the SOX gene family of transcriptional modulators
-
Graham JD, Hunt SM, Tran N, Clarke CL. Regulation of the expression and activity by progestins of a member of the SOX gene family of transcriptional modulators. J Mol Endocrinol 1999;22:295-304.
-
(1999)
J Mol Endocrinol
, vol.22
, pp. 295-304
-
-
Graham, J.D.1
Hunt, S.M.2
Tran, N.3
Clarke, C.L.4
-
9
-
-
33646256321
-
Sex-determining region Y box 4 is a transforming oncogene in human prostate cancer cells
-
Liu P, Ramachandran S, Ali-Seyed M, et al. Sex-determining region Y box 4 is a transforming oncogene in human prostate cancer cells. Cancer Res 2006;46:4011-9.
-
(2006)
Cancer Res
, vol.46
, pp. 4011-4019
-
-
Liu, P.1
Ramachandran, S.2
Ali-Seyed, M.3
-
10
-
-
0035990082
-
Differential expression of SOX4 and SOX11 in medulloblastoma
-
Lee CJ, Appleby VJ, Orme AT, Chan WI, Scotting PJ. Differential expression of SOX4 and SOX11 in medulloblastoma. J Neurooncol 2002;57:201-14.
-
(2002)
J Neurooncol
, vol.57
, pp. 201-214
-
-
Lee, C.J.1
Appleby, V.J.2
Orme, A.T.3
Chan, W.I.4
Scotting, P.J.5
-
11
-
-
33645746261
-
SOX4 expression in bladder carcinoma: Clinical aspects and in vitro functional characterization
-
Aaboe M, Birkenkamp-Demtroder K, Wiuf C, et al. SOX4 expression in bladder carcinoma: clinical aspects and in vitro functional characterization. Cancer Res 2006;66:3434-42.
-
(2006)
Cancer Res
, vol.66
, pp. 3434-3442
-
-
Aaboe, M.1
Birkenkamp-Demtroder, K.2
Wiuf, C.3
-
12
-
-
3042694117
-
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
-
Rhodes DR, Yu J, Shanker K, et al. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A 2004;101:9309-14.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 9309-9314
-
-
Rhodes, D.R.1
Yu, J.2
Shanker, K.3
-
13
-
-
30444437492
-
Sox4 cooperates with Evi1 in AKXD-23 myeloid tumors via transactivation of proviral LTR
-
Boyd KE, Xiao YY, Fan K, et al. Sox4 cooperates with Evi1 in AKXD-23 myeloid tumors via transactivation of proviral LTR. Blood 2006;107:733-41.
-
(2006)
Blood
, vol.107
, pp. 733-741
-
-
Boyd, K.E.1
Xiao, Y.Y.2
Fan, K.3
-
14
-
-
0036725051
-
New genes involved in cancer identified by retroviral tagging
-
Suzuki T, Shen H, Akagi K, et al. New genes involved in cancer identified by retroviral tagging. Nat Genet 2002;32:166-74.
-
(2002)
Nat Genet
, vol.32
, pp. 166-174
-
-
Suzuki, T.1
Shen, H.2
Akagi, K.3
-
15
-
-
0036725322
-
Genomewide retroviral insertional tagging of genes involved in cancer in Cdkn2a-deficient mice
-
Lund AH, Turner G, Trubetskoy A, et al. Genomewide retroviral insertional tagging of genes involved in cancer in Cdkn2a-deficient mice. Nat Genet 2002;32:160-5.
-
(2002)
Nat Genet
, vol.32
, pp. 160-165
-
-
Lund, A.H.1
Turner, G.2
Trubetskoy, A.3
-
16
-
-
3042704472
-
High-throughput retroviral tagging for identification of genes involved in initiation and progression of mouse splenic marginal zone lymphomas
-
Shin MS, Fredrickson TN, Hartley JW, Suzuki T, Agaki K, Morse HC III. High-throughput retroviral tagging for identification of genes involved in initiation and progression of mouse splenic marginal zone lymphomas. Cancer Res 2004;64:4419-27.
-
(2004)
Cancer Res
, vol.64
, pp. 4419-4427
-
-
Shin, M.S.1
Fredrickson, T.N.2
Hartley, J.W.3
Suzuki, T.4
Agaki, K.5
Morse III, H.C.6
-
17
-
-
44349148508
-
The three SoxC proteins-Sox4, Sox11 and Sox12-exhibit overlapping expression patterns and molecular properties
-
Dy P, Penzo-Mendez A, Wang H, Pedraza CE, Macklin WB, Lefebvre V. The three SoxC proteins-Sox4, Sox11 and Sox12-exhibit overlapping expression patterns and molecular properties. Nucleic Acids Res 2008;36:3101-17.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3101-3117
-
-
Dy, P.1
Penzo-Mendez, A.2
Wang, H.3
Pedraza, C.E.4
Macklin, W.B.5
Lefebvre, V.6
-
18
-
-
33748655171
-
Knockdown of Sox4 expression by RNAi induces apoptosis in ACC3 cells
-
Pramoonjago P, Baras AS, Moskaluk CA. Knockdown of Sox4 expression by RNAi induces apoptosis in ACC3 cells. Oncogene 2006;25:5626-39.
-
(2006)
Oncogene
, vol.25
, pp. 5626-5639
-
-
Pramoonjago, P.1
Baras, A.S.2
Moskaluk, C.A.3
-
19
-
-
52149109119
-
Identification of SOX4 target genes using phylogenetic footprinting-based prediction from expression microarrays suggests that overexpression of SOX4 potentiates metastasis in hepatocellular carcinoma
-
Liao YL, Sun YM, Chau GY, et al. Identification of SOX4 target genes using phylogenetic footprinting-based prediction from expression microarrays suggests that overexpression of SOX4 potentiates metastasis in hepatocellular carcinoma. Oncogene 2008;27:5578-89.
-
(2008)
Oncogene
, vol.27
, pp. 5578-5589
-
-
Liao, Y.L.1
Sun, Y.M.2
Chau, G.Y.3
-
20
-
-
33750882505
-
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
-
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW III, Bulyk ML. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol 2006;24:1429-35.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1429-1435
-
-
Berger, M.F.1
Philippakis, A.A.2
Qureshi, A.M.3
He, F.S.4
Estep III, P.W.5
Bulyk, M.L.6
-
21
-
-
0035912721
-
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
-
Bulyk ML, Huang X, Choo Y, Church GM. Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc Natl Acad Sci U S A 2001;98:7158-63.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 7158-7163
-
-
Bulyk, M.L.1
Huang, X.2
Choo, Y.3
Church, G.M.4
-
22
-
-
9644268153
-
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
-
Mukherjee S, Berger MF, Jona G, et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat Genet 2004;36:1331-9.
-
(2004)
Nat Genet
, vol.36
, pp. 1331-1339
-
-
Mukherjee, S.1
Berger, M.F.2
Jona, G.3
-
23
-
-
40949128823
-
Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer
-
McCabe CD, Spyropoulos DD, Martin D, Moreno CS. Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer. Cancer Res 2008;68:1988-96.
-
(2008)
Cancer Res
, vol.68
, pp. 1988-1996
-
-
McCabe, C.D.1
Spyropoulos, D.D.2
Martin, D.3
Moreno, C.S.4
-
24
-
-
10744227070
-
Control of pancreas and liver gene expression by HNF transcription factors
-
Odom DT, Zizlsperger N, Gordon DB, et al. Control of pancreas and liver gene expression by HNF transcription factors. Science 2004;303:1378-81.
-
(2004)
Science
, vol.303
, pp. 1378-1381
-
-
Odom, D.T.1
Zizlsperger, N.2
Gordon, D.B.3
-
25
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B, Robert F, Wyrick JJ, et al. Genome-wide location and function of DNA binding proteins. Science 2000;290:2306-9.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
-
26
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) method
-
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) method. Methods 2001;25:402-8.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
27
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001;98:5116-21.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
28
-
-
3242889405
-
CONFAC: Automated application of comparative genomic promoter analysis to DNA microarray datasets
-
Karanam S, Moreno CS. CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets. Nucleic Acids Res 2004;32:W475-84.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Karanam, S.1
Moreno, C.S.2
-
29
-
-
0041853625
-
MATCH: A tool for searching transcription factor binding sites in DNA sequences
-
Kel AE, Gossling E, Reuter I, Cheremushkin E, Kel-Margoulis OV, Wingender E. MATCH: a tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res 2003;31:3576-9.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Kel, A.E.1
Gossling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
-
30
-
-
0027222102
-
Sox-4, an Sry-like HMG box protein, is a transcriptional activator in lymphocytes
-
van de Wetering M, Oosterwegel M, van Norren K, Clevers H. Sox-4, an Sry-like HMG box protein, is a transcriptional activator in lymphocytes. EMBO J 1993;12:3847-54.
-
(1993)
EMBO J
, vol.12
, pp. 3847-3854
-
-
van de Wetering, M.1
Oosterwegel, M.2
van Norren, K.3
Clevers, H.4
-
31
-
-
0028968864
-
The high mobility group transcription factor, SOX4, transactivates the human CD2 enhancer
-
Wotton D, Lake RA, Farr CJ, Owen MJ. The high mobility group transcription factor, SOX4, transactivates the human CD2 enhancer. J Biol Chem 1995;270:7515-22.
-
(1995)
J Biol Chem
, vol.270
, pp. 7515-7522
-
-
Wotton, D.1
Lake, R.A.2
Farr, C.J.3
Owen, M.J.4
-
32
-
-
45449115390
-
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
-
Berger MF, Badis G, Gehrke AR, et al. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 2008;133:1266-76.
-
(2008)
Cell
, vol.133
, pp. 1266-1276
-
-
Berger, M.F.1
Badis, G.2
Gehrke, A.R.3
-
33
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis G, Jr., Sherman BT, Hosack DA, et al. DAVID: database for annotation, visualization, and integrated discovery. Genome Biol 2003;4:P3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
-
34
-
-
0024095839
-
Tenascin: CDNA cloning and induction by TGF-β
-
Pearson CA, Pearson D, Shibahara S, Hofsteenge J, Chiquet-Ehrismann R. Tenascin: cDNA cloning and induction by TGF-β. EMBO J 1988;7:2977-82.
-
(1988)
EMBO J
, vol.7
, pp. 2977-2982
-
-
Pearson, C.A.1
Pearson, D.2
Shibahara, S.3
Hofsteenge, J.4
Chiquet-Ehrismann, R.5
-
35
-
-
28744442905
-
β-Catenin regulates the expression of tenascin-C in human colorectal tumors
-
Beiter K, Hiendlmeyer E, Brabletz T, et al. β-Catenin regulates the expression of tenascin-C in human colorectal tumors. Oncogene 2005;24:8200-4.
-
(2005)
Oncogene
, vol.24
, pp. 8200-8204
-
-
Beiter, K.1
Hiendlmeyer, E.2
Brabletz, T.3
-
36
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005;102:15545-50.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
37
-
-
36549027355
-
GSEA-P: A desktop application for gene set enrichment analysis
-
Subramanian A, Kuehn H, Gould J, Tamayo P, Mesirov JP. GSEA-P: a desktop application for gene set enrichment analysis. Bioinformatics 2007;23:3251-3.
-
(2007)
Bioinformatics
, vol.23
, pp. 3251-3253
-
-
Subramanian, A.1
Kuehn, H.2
Gould, J.3
Tamayo, P.4
Mesirov, J.P.5
-
38
-
-
46149084428
-
Effects of TGFβ1 on gene expression in the HP75 human pituitary tumor cell line identified by gene expression profiling
-
Ruebel KH, Leontovich AA, Tanizaki Y, et al. Effects of TGFβ1 on gene expression in the HP75 human pituitary tumor cell line identified by gene expression profiling. Endocrine 2008;33:62-76.
-
(2008)
Endocrine
, vol.33
, pp. 62-76
-
-
Ruebel, K.H.1
Leontovich, A.A.2
Tanizaki, Y.3
-
39
-
-
33845187907
-
Global mapping of c-Myc binding sites and target gene networks in human B cells
-
Zeller KI, Zhao X, Lee CW, et al. Global mapping of c-Myc binding sites and target gene networks in human B cells. Proc Natl Acad Sci U S A 2006;103:17834-9.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17834-17839
-
-
Zeller, K.I.1
Zhao, X.2
Lee, C.W.3
-
40
-
-
33744982108
-
Use of differentiating adult stem cells (marrow stromal cells) to identify new downstream target genes for transcription factors
-
Ylostalo J, Smith JR, Pochampally RR, et al. Use of differentiating adult stem cells (marrow stromal cells) to identify new downstream target genes for transcription factors. Stem Cells 2006;24:642-52.
-
(2006)
Stem Cells
, vol.24
, pp. 642-652
-
-
Ylostalo, J.1
Smith, J.R.2
Pochampally, R.R.3
-
41
-
-
0035838988
-
Cytokine-specific transcriptional regulation through an IL-5Rα interacting protein
-
Geijsen N, Uings IJ, Pals C, et al. Cytokine-specific transcriptional regulation through an IL-5Rα interacting protein. Science 2001;293:1136-8.
-
(2001)
Science
, vol.293
, pp. 1136-1138
-
-
Geijsen, N.1
Uings, I.J.2
Pals, C.3
-
42
-
-
18744373853
-
MLL targets SET domain methyltransferase activity to Hox gene promoters
-
Milne TA, Briggs SD, Brock HW, et al. MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol Cell 2002;10:1107-17.
-
(2002)
Mol Cell
, vol.10
, pp. 1107-1117
-
-
Milne, T.A.1
Briggs, S.D.2
Brock, H.W.3
-
43
-
-
38949099372
-
Insights from clinical studies into the role of the MLL gene in infant and childhood leukemia
-
Chowdhury T, Brady HJ. Insights from clinical studies into the role of the MLL gene in infant and childhood leukemia. Blood Cells Mol Dis 2008;40:192-9.
-
(2008)
Blood Cells Mol Dis
, vol.40
, pp. 192-199
-
-
Chowdhury, T.1
Brady, H.J.2
-
44
-
-
0043244937
-
Nkx3.1; Pten mutant mice develop invasive prostate adenocarcinoma and lymph node metastases
-
Abate-Shen C, Banach-Petrosky WA, Sun X, et al. Nkx3.1; Pten mutant mice develop invasive prostate adenocarcinoma and lymph node metastases. Cancer Res 2003;63:3886-90.
-
(2003)
Cancer Res
, vol.63
, pp. 3886-3890
-
-
Abate-Shen, C.1
Banach-Petrosky, W.A.2
Sun, X.3
-
45
-
-
38049115129
-
Endogenous human microRNAs that suppress breast cancer metastasis
-
Tavazoie SF, Alarcon C, Oskarsson T, et al. Endogenous human microRNAs that suppress breast cancer metastasis. Nature 2008;451:147-52.
-
(2008)
Nature
, vol.451
, pp. 147-152
-
-
Tavazoie, S.F.1
Alarcon, C.2
Oskarsson, T.3
-
46
-
-
41149157649
-
TGFβ primes breast tumors for lung metastasis seeding through angiopoietin-like 4
-
Padua D, Zhang XH, Wang Q, et al. TGFβ primes breast tumors for lung metastasis seeding through angiopoietin-like 4. Cell 2008;133:66-77.
-
(2008)
Cell
, vol.133
, pp. 66-77
-
-
Padua, D.1
Zhang, X.H.2
Wang, Q.3
-
47
-
-
41949105179
-
Rac1 activation controls nuclear localization of β-catenin during canonical Wnt signaling
-
Wu X, Tu X, Joeng KS, Hilton MJ, Williams DA, Long F. Rac1 activation controls nuclear localization of β-catenin during canonical Wnt signaling. Cell 2008;133:340-53.
-
(2008)
Cell
, vol.133
, pp. 340-353
-
-
Wu, X.1
Tu, X.2
Joeng, K.S.3
Hilton, M.J.4
Williams, D.A.5
Long, F.6
-
48
-
-
34248576287
-
RNA helicase A interacts with RISC in human cells and functions in RISC loading
-
Robb GB, Rana TM. RNA helicase A interacts with RISC in human cells and functions in RISC loading. Mol Cell 2007;26:523-37.
-
(2007)
Mol Cell
, vol.26
, pp. 523-537
-
-
Robb, G.B.1
Rana, T.M.2
-
49
-
-
51049123624
-
Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer
-
Ambs S, Prueitt RL, Yi M, et al. Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer. Cancer Res 2008;68:6162-70.
-
(2008)
Cancer Res
, vol.68
, pp. 6162-6170
-
-
Ambs, S.1
Prueitt, R.L.2
Yi, M.3
-
50
-
-
33645755382
-
TLR3 can directly trigger apoptosis in human cancer cells
-
Salaun B, Coste I, Rissoan MC, Lebecque SJ, Renno T. TLR3 can directly trigger apoptosis in human cancer cells. J Immunol 2006;176:4894-901.
-
(2006)
J Immunol
, vol.176
, pp. 4894-4901
-
-
Salaun, B.1
Coste, I.2
Rissoan, M.C.3
Lebecque, S.J.4
Renno, T.5
-
51
-
-
35148886434
-
Tumour invasion and metastasis initiated by microRNA-10b in breast cancer
-
Ma L, Teruya-Feldstein J, Weinberg RA. Tumour invasion and metastasis initiated by microRNA-10b in breast cancer. Nature 2007;449:682-8.
-
(2007)
Nature
, vol.449
, pp. 682-688
-
-
Ma, L.1
Teruya-Feldstein, J.2
Weinberg, R.A.3
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