AFLPDAT: A collection of R functions for convenient handling of AFLP data

Molecular Ecology Notes

Volumn 6, Issue 3, 2006, Pages 603-604

  Ehrich, Dorothee ^a  

^a UNIVERSITY OF OSLO   (Norway)

Author keywords

AFLP; Data analysis software; Input format conversion; Phylogeography; Population genetics; R

Indexed keywords

CARYA;

EID: 33747446547     PISSN: 14718278     EISSN: 14718286     Source Type: Journal    
DOI: 10.1111/j.1471-8286.2006.01380.x     Document Type: Article

References (13)

1. Benham JJ (2001) GENOGRAPHER. Montana State University. Available from http://hordeum.oscs.montana.edu/genographer/.
2. Evano G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620.
3. Excoffier L, Laval G, Schneider S (2005) ARLEQUIN, version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50. Available from http://cmpg.unibe.ch/software/ arlequin3/.
4. Glaubitz JC (2004) CONVERT: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Molecular Ecology Notes, 4, 309-310.
5. Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Molecular Ecology, 11, 1157-1164. Available from http://darwin.eeb.uconn.edu/hickory/hickory.html.
6. Kosman E (2003) Nei's genetic diversity and the index of average differences are identical measures of diversity within populations. Plant Pathology, 52, 533-535.
7. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
8. Park SDE (2001) Trypanotolerance in West African cattle and the population genetic effects of selection. PhD. thesis, University of Dublin. Available from http://animalgenomics.ucd.ie/sdepark/ms-toolkit/.
9. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. Available from http://pritch.bsd.uchicago.edu/structure.html.
10. R_Development_Core_Team (2004) R: a language and environment for statistical computing R Foundation for Statistical Computing, Vienna, Austria. Available from. http://www.r-project.org/.
11. Swofford DL (2001) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
12. Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computer Application in the Biosciences, 10, 569-570. Available from http://bioinformatics.psb.ugent.be/psb/Userman/treeconw.html).
13. Vos P, Hogers R, Bleeker M et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.