메뉴 건너뛰기




Volumn 15, Issue 5, 2006, Pages 1405-1418

Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range

Author keywords

Arabidopsis thaliana; Genetic variation; Local populations; Microsatellites; Population structure; SNPs

Indexed keywords

MICROSATELLITE DNA; PLANT DNA; PRIMER DNA;

EID: 33645501337     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.02884.x     Document Type: Article
Times cited : (87)

References (52)
  • 1
    • 84966190558 scopus 로고
    • Population genetic structure and outcrossing rate of Arabidopsis thaliana
    • Abbott RJ Gomes MF 1989 Population genetic structure and outcrossing rate of Arabidopsis thaliana. Heredity 62 411 418.
    • (1989) Heredity , vol.62 , pp. 411-418
    • Abbott R, J.1    Gomes, M.F.2
  • 2
    • 0035151437 scopus 로고    scopus 로고
    • Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes. Arabidopsis thaliana
    • Aguadé M 2001 Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes. Arabidopsis thaliana. Molecular Biology and Evolution 18 1 9.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1-9
    • Aguadé M1
  • 3
    • 0033936751 scopus 로고    scopus 로고
    • Naturally occurring variation in Arabidopsis: An underexploited resource for plant genetics
    • Alonso-Blanco C Koorneef M 2000 Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends in Plant Science 5 22 29.
    • (2000) Trends in Plant Science , vol.5 , pp. 22-29
    • Alonso-Blanco C1    Koorneef, M.2
  • 4
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • Bell CJ Ecker JR 1994 Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19 137 144.
    • (1994) Genomics , vol.19 , pp. 137-144
    • Bell C, J.1    Ecker, J.R.2
  • 5
    • 0031961197 scopus 로고    scopus 로고
    • Genetic variation within and among populations of Arabidopsis thaliana
    • Bergelson J Stahl E Dudek S Kreitman M 1998a Genetic variation within and among populations of Arabidopsis thaliana. Genetics 148 1311 1323.
    • (1998) Genetics , vol.148 , pp. 1311-1323
    • Bergelson J1    Stahl, E.2    Dudek, S.3    Kreitman, M.4
  • 6
    • 85046499989 scopus 로고    scopus 로고
    • Male promiscuity is increased in transgenic plants
    • Bergelson J Purrington CB Wichman G 1998b Male promiscuity is increased in transgenic plants. Nature 395 25.
    • (1998) Nature , vol.395 , pp. 25
    • Bergelson J1    Purrington, C.B.2    Wichman, G.3
  • 7
    • 0035933527 scopus 로고    scopus 로고
    • Evolutionary dynamics of R-genes in plants
    • Bergelson J Kreitman M Stahl E Tian D 2001 Evolutionary dynamics of R-genes in plants. Science 292 2281 2285.
    • (2001) Science , vol.292 , pp. 2281-2285
    • Bergelson J1    Kreitman, M.2    Stahl, E.3    Tian, D.4
  • 8
    • 0038797074 scopus 로고    scopus 로고
    • The impact of genomics on the study of natural variation in Arabidopsis
    • Borevitz JO Nordborg M 2003 The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiology 132 718 725.
    • (2003) Plant Physiology , vol.132 , pp. 718-725
    • Borevitz J, O.1    Nordborg, M.2
  • 9
    • 84966144261 scopus 로고
    • Outcrossing rates and heterozygosity in natural populations of Hordeum spontaneum Koch in Israel
    • Brown AHD Zohary D Nevo E 1978 Outcrossing rates and heterozygosity in natural populations of Hordeum spontaneum Koch in Israel. Heredity 41 49 62.
    • (1978) Heredity , vol.41 , pp. 49-62
    • Brown H, D.A.1    Zohary, D.2    Nevo, E.3
  • 10
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Applications to human mitochondrial DNA restriction data
    • Excoffier L Smouse PE Quattro JM 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 131 479 491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier L1    Smouse, P.E.2    Quattro, J.M.3
  • 11
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D Stephens M Pritchard JK 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164 1567 1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush D1    Stephens, M.2    Pritchard, J.K.3
  • 12
    • 0003437299 scopus 로고
    • Department of Genetics, University Washington Seattle version 3.5c.)
    • Felsenstein J 1993 phylip. Phylogeny Inference Package ( version 3.5c.) Department of Genetics, University Washington Seattle.
    • (1993) Phylip. Phylogeny Inference Package (
    • Felsenstein J1
  • 15
    • 13244275218 scopus 로고    scopus 로고
    • Quantitative trait loci affecting delta C-13 and response to differential water availability in Arabidopsis thaliana
    • Hausmann NJ Juenger TE Sen S et al. 2005 Quantitative trait loci affecting delta C-13 and response to differential water availability in Arabidopsis thaliana. Evolution 59 81 96.
    • (2005) Evolution , vol.59 , pp. 81-96
    • Hausmann N, J.1    Juenger, T.E.2    Sen, S.3
  • 16
    • 0032950568 scopus 로고    scopus 로고
    • A new Ac-like transposon of Arabidopsis is associated with a deletion of the RPS5 disease resistance gene
    • Henk AD Warren RF Innes RW 1999 A new Ac-like transposon of Arabidopsis is associated with a deletion of the RPS5 disease resistance gene. Genetics 151 1581 1589.
    • (1999) Genetics , vol.151 , pp. 1581-1589
    • Henk A, D.1    Warren, R.F.2    Innes, R.W.3
  • 17
    • 0035408813 scopus 로고    scopus 로고
    • The arms race is ancient history in Arabidopsis the wildflower
    • Holub EB 2001 The arms race is ancient history in Arabidopsis the wildflower. Nature Reviews. Genetics 2 516 527.
    • (2001) Nature Reviews. Genetics , vol.2 , pp. 516-527
    • Holub E, B.1
  • 18
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18 337 338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson R, R.1
  • 19
    • 0033869527 scopus 로고    scopus 로고
    • The coalescent in an exponentially growing metapopulation and its application to Arabidopsis thaliana
    • Innan H Stephan W 2000 The coalescent in an exponentially growing metapopulation and its application to Arabidopsis thaliana. Genetics 155 2015 2019.
    • (2000) Genetics , vol.155 , pp. 2015-2019
    • Innan H1    Stephan, W.2
  • 20
    • 0029796494 scopus 로고    scopus 로고
    • Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana
    • Innan H Tajima F Terauchi R Miyashita NT 1996 Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana. Genetics 143 1761 1770.
    • (1996) Genetics , vol.143 , pp. 1761-1770
    • Innan H1    Tajima, F.2    Terauchi, R.3    Miyashita, N.T.4
  • 21
    • 0030803875 scopus 로고    scopus 로고
    • Microsatellite polymorphisms in natural populations of the wild plant Arabidopsis thaliana
    • Innan H Terauchi R Miyashita T 1997 Microsatellite polymorphisms in natural populations of the wild plant Arabidopsis thaliana. Genetics 146 1441 1452.
    • (1997) Genetics , vol.146 , pp. 1441-1452
    • Innan H1    Terauchi, R.2    Miyashita, T.3
  • 22
    • 7244223509 scopus 로고    scopus 로고
    • Neutral genetic variation among wild North American populations of the weedy plant Arabidopsis thaliana is not geographically structured
    • Jørgensen S Mauricio R 2004 Neutral genetic variation among wild North American populations of the weedy plant Arabidopsis thaliana is not geographically structured. Molecular Ecology 13 3403 3413.
    • (2004) Molecular Ecology , vol.13 , pp. 3403-3413
    • Jørgensen S1    Mauricio, R.2
  • 23
    • 13244253551 scopus 로고    scopus 로고
    • Epistasis and genotype-environment interaction for quantitative trait loci affecting flowering time in Arabidopsis thaliana
    • Juenger TE Sen S Stowe KA Simms EL 2005 Epistasis and genotype-environment interaction for quantitative trait loci affecting flowering time in Arabidopsis thaliana. Genetica 123 87 105.
    • (2005) Genetica , vol.123 , pp. 87-105
    • Juenger T, E.1    Sen, S.2    Stowe, K.A.3    Simms, E.L.4
  • 24
    • 0030729703 scopus 로고    scopus 로고
    • Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana
    • Kawabe A Innan H Terauchi R Miyashita NT 1997 Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana. Molecular Biology and Evolution 14 1303 1315.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 1303-1315
    • Kawabe A1    Innan, H.2    Terauchi, R.3    Miyashita, N.T.4
  • 25
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura M Crow J 1964 The number of alleles that can be maintained in a finite population. Genetics 49 725 738.
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura M1    Crow, J.2
  • 26
    • 0018191975 scopus 로고
    • Stepwise mutation model and distribution of allelic frequencies in a finite population
    • Kimura M Ohta T 1978 Stepwise mutation model and distribution of allelic frequencies in a finite population. Proceedings of the National Academy of Sciences, USA 75 2868 2872.
    • (1978) Proceedings of the National Academy of Sciences, USA , vol.75 , pp. 2868-2872
    • Kimura M1    Ohta, T.2
  • 27
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • Koch MA Haubold B Mitchell-Olds T 2000 Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Molecular Biology and Evolution 17 1483 1498.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1483-1498
    • Koch M, A.1    Haubold, B.2    Mitchell-Olds, T.3
  • 28
    • 18344382775 scopus 로고    scopus 로고
    • Epistasis and balanced polymorphism influencing complex trait variation
    • Kroyman J Mitchell-Olds T 2005 Epistasis and balanced polymorphism influencing complex trait variation. Nature 435 95 98.
    • (2005) Nature , vol.435 , pp. 95-98
    • Kroyman J1    Mitchell-Olds, T.2
  • 29
    • 0031214142 scopus 로고    scopus 로고
    • Genetic variation at marker loci and in quantitative traits in natural populations of Arabidopsis thaliana
    • Kuittinen H Mattila A Savolainen O 1997 Genetic variation at marker loci and in quantitative traits in natural populations of Arabidopsis thaliana. Heredity 79 144 152.
    • (1997) Heredity , vol.79 , pp. 144-152
    • Kuittinen H1    Mattila, A.2    Savolainen, O.3
  • 30
    • 0036854309 scopus 로고    scopus 로고
    • Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana
    • Kuittinen H Salguero D Aguadé M 2002 Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana. Molecular Biology and Evolution 19 2030 2034.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 2030-2034
    • Kuittinen H1    Salguero, D.2    Aguadé, M.3
  • 31
    • 0029983389 scopus 로고    scopus 로고
    • The control of trichome number and spacing in Arabidopsis
    • Larkin JC Young N Prigge M Marks MD 1996 The control of trichome number and spacing in Arabidopsis. Development 122 997 1005.
    • (1996) Development , vol.122 , pp. 997-1005
    • Larkin J, C.1    Young, N.2    Prigge, M.3    Marks, M.D.4
  • 32
    • 0031720588 scopus 로고    scopus 로고
    • Length polymorphism and allele structure of trinucleotide microsatellites in natural accessions of Arabidopsis thaliana
    • Loridon K Cournoyer B Goubely C Depeiges A Picard G 1998 Length polymorphism and allele structure of trinucleotide microsatellites in natural accessions of Arabidopsis thaliana. Theoretical and Applied Genetics 97 591 604.
    • (1998) Theoretical and Applied Genetics , vol.97 , pp. 591-604
    • Loridon K1    Cournoyer, B.2    Goubely, C.3    Depeiges, A.4    Picard, G.5
  • 34
    • 18344396962 scopus 로고    scopus 로고
    • Natural variation of light sensitivity in Arabidopsis
    • Maloof JN Borevitz JO Dabi T et al. 2001 Natural variation of light sensitivity in Arabidopsis. Nature Genetics 29 441 446.
    • (2001) Nature Genetics , vol.29 , pp. 441-446
    • Maloof J, N.1    Borevitz, J.O.2    Dabi, T.3
  • 35
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N 1967 The detection of disease clustering and a generalized regression approach. Cancer Research 27 209 220.
    • (1967) Cancer Research , vol.27 , pp. 209-220
    • Mantel N1
  • 36
    • 0344069720 scopus 로고    scopus 로고
    • DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis
    • Miyashita MT Kawabe TA Innan H 1999 DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis. Genetics 152 1723 1731.
    • (1999) Genetics , vol.152 , pp. 1723-1731
    • Miyashita M, T.1    Kawabe, T.A.2    Innan, H.3
  • 38
    • 0030822809 scopus 로고    scopus 로고
    • The coalescent process with selfing
    • Nordborg M Donnelly P 1997 The coalescent process with selfing. Genetics 146 1185 1195.
    • (1997) Genetics , vol.146 , pp. 1185-1195
    • Nordborg M1    Donnelly, P.2
  • 39
    • 0036479020 scopus 로고    scopus 로고
    • The extent of linkage disequilibrium in Arabidopsis thaliana
    • Nordborg M Borevitz JO Bergelson J et al. 2002 The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics 30 190 193.
    • (2002) Nature Genetics , vol.30 , pp. 190-193
    • Nordborg M1    Borevitz, J.O.2    Bergelson, J.3
  • 40
    • 22744434580 scopus 로고    scopus 로고
    • The genomic pattern of polymorphism in Arabidopsis thaliana
    • Nordborg M Hu T Ishino Y et al. 2005 The genomic pattern of polymorphism in Arabidopsis thaliana. PLoS Biology 3 e196.
    • (2005) PLoS Biology , vol.3 , pp. 196
    • Nordborg M1    Hu, T.2    Ishino, Y.3
  • 41
    • 0015765702 scopus 로고
    • The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population
    • Ohta T Kimura M 1973 The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population. Genetical Reseach 22 201 204.
    • (1973) Genetical Reseach , vol.22 , pp. 201-204
    • Ohta T1    Kimura, M.2
  • 43
    • 0034522525 scopus 로고    scopus 로고
    • Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe
    • Sharbel TS Haubold B Mitchell-Olds T 2000 Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Molecular Ecology 9 2109 2118.
    • (2000) Molecular Ecology , vol.9 , pp. 2109-2118
    • Sharbel T, S.1    Haubold, B.2    Mitchell-Olds, T.3
  • 45
    • 0033549777 scopus 로고    scopus 로고
    • Dynamics of disease resistance polymorphisms at the Rpm1 locus of Arabidopsis
    • Stahl EA Dwyer G Mauricio R Kreitman M Bergelson J 1999 Dynamics of disease resistance polymorphisms at the Rpm1 locus of Arabidopsis. Nature 400 667 671.
    • (1999) Nature , vol.400 , pp. 667-671
    • Stahl E, A.1    Dwyer, G.2    Mauricio, R.3    Kreitman, M.4    Bergelson, J.5
  • 46
    • 12444261781 scopus 로고    scopus 로고
    • Genetic variability in natural populations of Arabidopsis thaliana from northern Europe
    • Stenøien HK Fenster CB Tonteri A Savolainen O 2005 Genetic variability in natural populations of Arabidopsis thaliana from northern Europe. Molecular Ecology 14 137 148.
    • (2005) Molecular Ecology , vol.14 , pp. 137-148
    • Stenøien H, K.1    Fenster, C.B.2    Tonteri, A.3    Savolainen, O.4
  • 47
    • 17444429190 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in multiple populations of Arabidopsis thaliana identifies natural allelic variation for trichome density
    • Symonds VV Godoy AV Alconada T et al. 2005 Mapping quantitative trait loci in multiple populations of Arabidopsis thaliana identifies natural allelic variation for trichome density. Genetics 169 1649 1658.
    • (2005) Genetics , vol.169 , pp. 1649-1658
    • Symonds V, V.1    Godoy, A.V.2    Alconada, T.3
  • 49
    • 0029023131 scopus 로고
    • Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan
    • Todokoro S Terauchi R Kawano S 1995 Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan. Japanese Journal of Genetics 70 543 554.
    • (1995) Japanese Journal of Genetics , vol.70 , pp. 543-554
    • Todokoro S1    Terauchi, R.2    Kawano, S.3
  • 50
    • 0027474097 scopus 로고
    • Allele frequencies at microsatellite loci: The stepwise mutation model revisited
    • Valdes AM Slatkin M Freimer N 1993 Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133 737 749.
    • (1993) Genetics , vol.133 , pp. 737-749
    • Valdes A, M.1    Slatkin, M.2    Freimer, N.3
  • 51
    • 14044271573 scopus 로고    scopus 로고
    • Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation
    • Werner JD Borevitz JO Warthmann N et al. 2005 Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences, USA 102 2460 2465.
    • (2005) Proceedings of the National Academy of Sciences, USA , vol.102 , pp. 2460-2465
    • Werner J, D.1    Borevitz, J.O.2    Warthmann, N.3
  • 52
    • 11244270363 scopus 로고    scopus 로고
    • A separation-of-timescales approach to the coalescent in a continuous population
    • Research in Joy Bergelson's laboratory addresses evolutionary aspects of the interactions between plants and pathogenic bacteria. Erica Bakker is a postdoctoral researcher working with Joy Bergelson and Martin Kreitman on R gene polymorphism patterns in Arabidopsis. Martin Kreitman's laboratory focuses on adaptation and evolution at the molecular level in Arabidopsis and Drosophila. This research was conducted in collaboration with Magnus Nordborg, whose laboratory focuses on the evolutionary dynamics of adaptation in plants. Christopher Toomajian is a postdoctoral researcher working with Magnus Nordborg at the University of Southern California. Eli Stahl's laboratory focuses on evolutionary dynamics in Arabidopsis and related species.
    • Wilkins JF 2004 A separation-of-timescales approach to the coalescent in a continuous population. Genetics 168 2227 2244.
    • (2004) Genetics , vol.168 , pp. 2227-2244
    • Wilkins J, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.