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Volumn 3, Issue 12, 2008, Pages

Topoisomerase IIβ activates a subset of neuronal genes that are repressed in AT-rich genomic environment

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); DNA TOPOISOMERASE (ATP HYDROLYSING) BETA; GENOMIC DNA; ION CHANNEL; MEMBRANE PROTEIN; SPACER DNA; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; DNA TOPOISOMERASE II BETA;

EID: 58149345831     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0004103     Document Type: Article
Times cited : (53)

References (33)
  • 1
    • 0023490532 scopus 로고
    • Purification of topoisomerase II from amsacrine-resistant P388 leukemia cells. Evidence for two forms of the enzyme
    • Drake FH, Zimmerman JP, McCabe FL, Bartus HF, Per SR, et al. (1987) Purification of topoisomerase II from amsacrine-resistant P388 leukemia cells. Evidence for two forms of the enzyme. J Biol Chem 262: 16739-16747.
    • (1987) J Biol Chem , vol.262 , pp. 16739-16747
    • Drake, F.H.1    Zimmerman, J.P.2    McCabe, F.L.3    Bartus, H.F.4    Per, S.R.5
  • 3
    • 0035937159 scopus 로고    scopus 로고
    • Involvement of DNA topoisomerase IIb in neuronal differentiation
    • Tsutsui K, Tsutsui K, Sano K, Kikuchi A, Tokunaga A (2001) Involvement of DNA topoisomerase IIb in neuronal differentiation. J Biol Chem 276: 5769-5778.
    • (2001) J Biol Chem , vol.276 , pp. 5769-5778
    • Tsutsui, K.1    Tsutsui, K.2    Sano, K.3    Kikuchi, A.4    Tokunaga, A.5
  • 4
    • 0038810023 scopus 로고    scopus 로고
    • Aberrant lamination in the cerebral cortex of mouse embryos lacking DNA topoisomerase IIb
    • Lyu YL, Wang JC (2003) Aberrant lamination in the cerebral cortex of mouse embryos lacking DNA topoisomerase IIb. Proc Natl Acad Sci U S A 100: 7123-7128.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7123-7128
    • Lyu, Y.L.1    Wang, J.C.2
  • 5
    • 33745255099 scopus 로고    scopus 로고
    • A topoisomerase IIβ-mediated dsDNA break required for regulated transcription
    • Ju BG, Lunyak VV, Perissi V, Garcia-Bassets I, Rose DW, et al. (2006) A topoisomerase IIβ-mediated dsDNA break required for regulated transcription. Science 312: 1798-1802.
    • (2006) Science , vol.312 , pp. 1798-1802
    • Ju, B.G.1    Lunyak, V.V.2    Perissi, V.3    Garcia-Bassets, I.4    Rose, D.W.5
  • 6
    • 38149045693 scopus 로고    scopus 로고
    • DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression
    • Perillo B, Ombra MN, Bertoni A, Cuozzo C, Sacchetti S, et al. (2008) DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression. Science 319: 202-206.
    • (2008) Science , vol.319 , pp. 202-206
    • Perillo, B.1    Ombra, M.N.2    Bertoni, A.3    Cuozzo, C.4    Sacchetti, S.5
  • 7
    • 33750301347 scopus 로고    scopus 로고
    • Role of topoisomerase IIβ in the expression of developmentally regulated genes
    • Lyu YL, Lin CP, Azarova AM, Cai L, Wang JC, et al. (2006) Role of topoisomerase IIβ in the expression of developmentally regulated genes. Mol Cell Biol 26: 7929-7941.
    • (2006) Mol Cell Biol , vol.26 , pp. 7929-7941
    • Lyu, Y.L.1    Lin, C.P.2    Azarova, A.M.3    Cai, L.4    Wang, J.C.5
  • 8
    • 0024395605 scopus 로고
    • Effect of antineoplastic agents on the DNA cleavage/ religation reaction of eukaryotic topoisomerase II: Inhibition of DNA religation by etoposide
    • Osheroff N (1989) Effect of antineoplastic agents on the DNA cleavage/ religation reaction of eukaryotic topoisomerase II: inhibition of DNA religation by etoposide. Biochemistry 28: 6157-6160.
    • (1989) Biochemistry , vol.28 , pp. 6157-6160
    • Osheroff, N.1
  • 10
    • 0022431874 scopus 로고
    • Drosophila topoisomerase II double-strand DNA cleavage: Analysis of DNA sequence homology at the cleavage site
    • Sander M, Hsieh TS (1985) Drosophila topoisomerase II double-strand DNA cleavage: analysis of DNA sequence homology at the cleavage site. Nucleic Acids Res 13: 1057-1072.
    • (1985) Nucleic Acids Res , vol.13 , pp. 1057-1072
    • Sander, M.1    Hsieh, T.S.2
  • 11
    • 0023902435 scopus 로고
    • A consensus sequence for cleavage by vertebrate DNA topoisomerase II
    • Spitzner JR, Muller MT (1988) A consensus sequence for cleavage by vertebrate DNA topoisomerase II. Nucleic Acids Res 16: 5533-5556.
    • (1988) Nucleic Acids Res , vol.16 , pp. 5533-5556
    • Spitzner, J.R.1    Muller, M.T.2
  • 12
    • 0033582466 scopus 로고    scopus 로고
    • In vitro evolution of preferred topoisomerase II DNA cleavage sites
    • Burden DA, Osheroff N (1999) In vitro evolution of preferred topoisomerase II DNA cleavage sites. J Biol Chem 274: 5227-5235.
    • (1999) J Biol Chem , vol.274 , pp. 5227-5235
    • Burden, D.A.1    Osheroff, N.2
  • 13
    • 0032033330 scopus 로고    scopus 로고
    • The mapping of DNA topoisomerase sites in vivo: A tool to enlight the functions of topoisomerases
    • Borde V, Duguet M (1998) The mapping of DNA topoisomerase sites in vivo: a tool to enlight the functions of topoisomerases. Biochimie 80: 223-233.
    • (1998) Biochimie , vol.80 , pp. 223-233
    • Borde, V.1    Duguet, M.2
  • 14
    • 0024987446 scopus 로고
    • Nucleosome positioning as a critical determinant for the DNA cleavage sites of mammalian DNA topoisomerase II in reconstituted simian virus 40 chromatin
    • Capranico G, Jaxel C, Roberge M, Kohn KW, Pommier Y (1990) Nucleosome positioning as a critical determinant for the DNA cleavage sites of mammalian DNA topoisomerase II in reconstituted simian virus 40 chromatin. Nucleic Acids Res 18: 4553-4559.
    • (1990) Nucleic Acids Res , vol.18 , pp. 4553-4559
    • Capranico, G.1    Jaxel, C.2    Roberge, M.3    Kohn, K.W.4    Pommier, Y.5
  • 15
    • 0025936208 scopus 로고
    • Chromatin structure, not DNA sequence specificity, is the primary determinant of topoisomerase II sites of action in vivo
    • Udvardy A, Schedl P (1991) Chromatin structure, not DNA sequence specificity, is the primary determinant of topoisomerase II sites of action in vivo. Mol Cell Biol 11: 4973-4984.
    • (1991) Mol Cell Biol , vol.11 , pp. 4973-4984
    • Udvardy, A.1    Schedl, P.2
  • 16
    • 0026526740 scopus 로고
    • In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics
    • Kas E, Laemmli UK (1992) In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics. Embo J 11: 705-716.
    • (1992) Embo J , vol.11 , pp. 705-716
    • Kas, E.1    Laemmli, U.K.2
  • 17
    • 0022553738 scopus 로고
    • Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites
    • Cockerill PN, Garrard WT (1986) Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites. Cell 44: 273-282.
    • (1986) Cell , vol.44 , pp. 273-282
    • Cockerill, P.N.1    Garrard, W.T.2
  • 18
    • 0026731942 scopus 로고
    • Incomplete reversion of double stranded DNA cleavage mediated by Drosophila topoisomerase II: Formation of single stranded DNA cleavage complex in the presence of an anti-tumor drug VM26
    • Lee MP, Hsieh T (1992) Incomplete reversion of double stranded DNA cleavage mediated by Drosophila topoisomerase II: formation of single stranded DNA cleavage complex in the presence of an anti-tumor drug VM26. Nucleic Acids Res 20: 5027-5033.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5027-5033
    • Lee, M.P.1    Hsieh, T.2
  • 19
    • 0033025571 scopus 로고    scopus 로고
    • Immature granule neurons from cerebella of different ages exhibit distinct developmental potentials
    • Raetzman LT, Siegel RE (1999) Immature granule neurons from cerebella of different ages exhibit distinct developmental potentials. J Neurobiol 38: 559-570.
    • (1999) J Neurobiol , vol.38 , pp. 559-570
    • Raetzman, L.T.1    Siegel, R.E.2
  • 20
    • 0037494876 scopus 로고    scopus 로고
    • The SUMO pathway is required for selective degradation of DNA topoisomerase IIβ induced by a catalytic inhibitor ICRF-193
    • Isik S, Sano K, Tsutsui K, Seki M, Enomoto T, et al. (2003) The SUMO pathway is required for selective degradation of DNA topoisomerase IIβ induced by a catalytic inhibitor ICRF-193. FEBS Lett 546: 374-378.
    • (2003) FEBS Lett , vol.546 , pp. 374-378
    • Isik, S.1    Sano, K.2    Tsutsui, K.3    Seki, M.4    Enomoto, T.5
  • 21
    • 0029961651 scopus 로고    scopus 로고
    • DNA transport by a type II topoisomerase: Direct evidence for a two-gate mechanism
    • Roca J, Berger JM, Harrison SC, Wang JC (1996) DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism. Proc Natl Acad Sci U S A 93: 4057-4062.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 4057-4062
    • Roca, J.1    Berger, J.M.2    Harrison, S.C.3    Wang, J.C.4
  • 22
    • 33745762610 scopus 로고    scopus 로고
    • Topoisomerase II not topoisomerase I is the proficient relaxase of nucleosomal DNA
    • Salceda J, Fernandez X, Roca J (2006) Topoisomerase II not topoisomerase I is the proficient relaxase of nucleosomal DNA. EMBO J 25: 2575-2583.
    • (2006) EMBO J , vol.25 , pp. 2575-2583
    • Salceda, J.1    Fernandez, X.2    Roca, J.3
  • 23
    • 0025647116 scopus 로고
    • Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
    • Zechiedrich EL, Osheroff N (1990) Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J 9: 4555-4562.
    • (1990) EMBO J , vol.9 , pp. 4555-4562
    • Zechiedrich, E.L.1    Osheroff, N.2
  • 24
    • 34347253238 scopus 로고    scopus 로고
    • Decondensing the protamine domain for transcription
    • Martins RP, Krawetz SA (2007) Decondensing the protamine domain for transcription. Proc Natl Acad Sci U S A 104: 8340-8345.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8340-8345
    • Martins, R.P.1    Krawetz, S.A.2
  • 26
    • 47249088331 scopus 로고    scopus 로고
    • Identifying autism loci and genes by tracing recent shared ancestry
    • Morrow EM, Yoo SY, Flavell SW, Kim TK, Lin Y, et al. (2008) Identifying autism loci and genes by tracing recent shared ancestry. Science 321: 218-223.
    • (2008) Science , vol.321 , pp. 218-223
    • Morrow, E.M.1    Yoo, S.Y.2    Flavell, S.W.3    Kim, T.K.4    Lin, Y.5
  • 28
    • 45149084413 scopus 로고    scopus 로고
    • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    • Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, et al. (2008) Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453: 948-951.
    • (2008) Nature , vol.453 , pp. 948-951
    • Guelen, L.1    Pagie, L.2    Brasset, E.3    Meuleman, W.4    Faza, M.B.5
  • 29
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, et al. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genet 38: 1348-1354.
    • (2006) Nature Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5
  • 30
    • 34547571030 scopus 로고    scopus 로고
    • g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments
    • Reimand J, Kull M, Peterson H, Hansen J, Vilo J (2007) g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res 35: W193-W200.
    • (2007) Nucleic Acids Res , vol.35
    • Reimand, J.1    Kull, M.2    Peterson, H.3    Hansen, J.4    Vilo, J.5
  • 31
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth T, Speed TP (2004) GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20: 1464-1465.
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 32
    • 0034704248 scopus 로고    scopus 로고
    • Genomewide location and function of DNA binding proteins
    • Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, et al. (2000) Genomewide location and function of DNA binding proteins. Science 290: 2306-2309.
    • (2000) Science , vol.290 , pp. 2306-2309
    • Ren, B.1    Robert, F.2    Wyrick, J.J.3    Aparicio, O.4    Jennings, E.G.5
  • 33
    • 33747874899 scopus 로고    scopus 로고
    • Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays
    • Scacheri PC, Crawford GE, Davis S (2006) Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays. Methods Enzymol 411: 270-282.
    • (2006) Methods Enzymol , vol.411 , pp. 270-282
    • Scacheri, P.C.1    Crawford, G.E.2    Davis, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.