-
2
-
-
12044250363
-
Biological pattern formation: From basic mechanisms to complex structures
-
Koch, A. J., and H. Meinhardt. 1994. Biological pattern formation: from basic mechanisms to complex structures. Rev. Mod. Phys. 66:1481-1507.
-
(1994)
Rev. Mod. Phys
, vol.66
, pp. 1481-1507
-
-
Koch, A.J.1
Meinhardt, H.2
-
4
-
-
0032524323
-
The interpretation of position in a morphogen gradient as revealed by occupancy of activin receptors
-
Dyson, S., and J. B. Gurdon. 1998. The interpretation of position in a morphogen gradient as revealed by occupancy of activin receptors. Cell. 93:557-568.
-
(1998)
Cell
, vol.93
, pp. 557-568
-
-
Dyson, S.1
Gurdon, J.B.2
-
5
-
-
0023677769
-
A gradient of bicoid protein in Drosophila embryos
-
Driever, W., and C. Nusslein-Volhard. 1988. A gradient of bicoid protein in Drosophila embryos. Cell. 54:83-93.
-
(1988)
Cell
, vol.54
, pp. 83-93
-
-
Driever, W.1
Nusslein-Volhard, C.2
-
6
-
-
0023679744
-
The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner
-
Driever, W., and C. Nusslein-Volhard. 1988. The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner. Cell. 54:95-104.
-
(1988)
Cell
, vol.54
, pp. 95-104
-
-
Driever, W.1
Nusslein-Volhard, C.2
-
7
-
-
28844448557
-
Finding the center reliably: Robust patterns of developmental gene expression
-
Howard, M., and P. R. ten Wolde. 2005. Finding the center reliably: robust patterns of developmental gene expression. Phys. Rev. Lett. 95:208103.
-
(2005)
Phys. Rev. Lett
, vol.95
, pp. 208103
-
-
Howard, M.1
ten Wolde, P.R.2
-
8
-
-
18144363600
-
Engineering gene networks to emulate Drosophila embryonic pattern formation
-
Isalan, M., C. Lemerle, and L. Serrano. 2005. Engineering gene networks to emulate Drosophila embryonic pattern formation. PLoS Biol. 3:e64.
-
(2005)
PLoS Biol
, vol.3
-
-
Isalan, M.1
Lemerle, C.2
Serrano, L.3
-
9
-
-
33646901020
-
-
Perkins, T. J., J. Jaeger, J. Reinitz, and L. Glass. 2006. Reverse engineering the gap gene network of Drosophila melanogaster. PLoS Comp. Biol. 2:e51.
-
Perkins, T. J., J. Jaeger, J. Reinitz, and L. Glass. 2006. Reverse engineering the gap gene network of Drosophila melanogaster. PLoS Comp. Biol. 2:e51.
-
-
-
-
10
-
-
34247619844
-
Fundamental limits to position determination by concentration gradients
-
Tostevin, F., P. R. ten Wolde, and M. Howard. 2007. Fundamental limits to position determination by concentration gradients. PLoS Comput. Biol. 3:e78.
-
(2007)
PLoS Comput. Biol
, vol.3
-
-
Tostevin, F.1
ten Wolde, P.R.2
Howard, M.3
-
11
-
-
34447104600
-
Stability and nuclear dynamics of the bicoid morphogen gradient
-
Gregor, T., E. F. Wieschaus, A. P. McGregor, W. Bialek, and D. W. Tank. 2007. Stability and nuclear dynamics of the bicoid morphogen gradient. Cell. 130:141-152.
-
(2007)
Cell
, vol.130
, pp. 141-152
-
-
Gregor, T.1
Wieschaus, E.F.2
McGregor, A.P.3
Bialek, W.4
Tank, D.W.5
-
12
-
-
34447099234
-
Probing the limits to positional information
-
Gregor, T., D. W. Tank, E. F. Wieschaus, and W. Bialek. 2007. Probing the limits to positional information. Cell. 130:153-164.
-
(2007)
Cell
, vol.130
, pp. 153-164
-
-
Gregor, T.1
Tank, D.W.2
Wieschaus, E.F.3
Bialek, W.4
-
13
-
-
38049032428
-
Characterization of the Drosophila segment determination morphome
-
Surkova, S., D. Kosman, K. Kozlov, Manu, E. Myasnikova, A. A. Samsonova, A. Spirov, C. E. Vanario-Alonso, M. Samsonova, and J. Reinitz. 2008. Characterization of the Drosophila segment determination morphome. Dev. Biol. 313:844-862.
-
(2008)
Dev. Biol
, vol.313
, pp. 844-862
-
-
Surkova, S.1
Kosman, D.2
Kozlov, K.3
Manu4
Myasnikova, E.5
Samsonova, A.A.6
Spirov, A.7
Vanario-Alonso, C.E.8
Samsonova, M.9
Reinitz, J.10
-
14
-
-
0015910572
-
Developmental compartmentalization of the wing disk of Drosophila
-
García-Bellido, A., P. Ripoll, and G. Morata. 1973. Developmental compartmentalization of the wing disk of Drosophila. Nat. New Biol. 245:251-253.
-
(1973)
Nat. New Biol
, vol.245
, pp. 251-253
-
-
García-Bellido, A.1
Ripoll, P.2
Morata, G.3
-
15
-
-
0031798807
-
Compartment boundaries: Where, why and how?
-
Vincent, J.-P. 1998. Compartment boundaries: where, why and how? Int. J. Dev. Biol. 42:311-315.
-
(1998)
Int. J. Dev. Biol
, vol.42
, pp. 311-315
-
-
Vincent, J.-P.1
-
16
-
-
18144431763
-
Robust formation of morphogen gradients
-
Bollenbach, T., K. Kruse, P. Pantazis, M. González-Gaitán, and F. Jülicher. 2005. Robust formation of morphogen gradients. Phys. Rev. Lett. 94:018103.
-
(2005)
Phys. Rev. Lett
, vol.94
, pp. 018103
-
-
Bollenbach, T.1
Kruse, K.2
Pantazis, P.3
González-Gaitán, M.4
Jülicher, F.5
-
17
-
-
33846593303
-
Kinetics of morphogen gradient formation
-
Kicheva, A., P. Pantazis, T. Bollenbach, Y. Kalaidzidis, T. Bittig, F. Jülicher, and M. González-Gaitán. 2007. Kinetics of morphogen gradient formation. Science. 315:521-525.
-
(2007)
Science
, vol.315
, pp. 521-525
-
-
Kicheva, A.1
Pantazis, P.2
Bollenbach, T.3
Kalaidzidis, Y.4
Bittig, T.5
Jülicher, F.6
González-Gaitán, M.7
-
18
-
-
33846363198
-
Morphogen transport in epithelia
-
Bollenbach, T., K. Kruse, P. Pantazis, M. González-Gaitán, and F. Jülicher. 2007. Morphogen transport in epithelia. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 75:011901.
-
(2007)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys
, vol.75
, pp. 011901
-
-
Bollenbach, T.1
Kruse, K.2
Pantazis, P.3
González-Gaitán, M.4
Jülicher, F.5
-
19
-
-
41549084845
-
Precision of the Dpp gradient
-
Bollenbach, T., P. Pantazis, A. Kicheva, C. Bökel, M. González-Gaitán, and F. Jülicher. 2008. Precision of the Dpp gradient. Development. 135:1137-1146.
-
(2008)
Development
, vol.135
, pp. 1137-1146
-
-
Bollenbach, T.1
Pantazis, P.2
Kicheva, A.3
Bökel, C.4
González-Gaitán, M.5
Jülicher, F.6
-
20
-
-
0035178997
-
Boundaries in development: Formation and function
-
Irvine, K. D., and C. Rauskolb. 2001. Boundaries in development: formation and function. Annu. Rev. Cell Dev. Biol. 17:189-214.
-
(2001)
Annu. Rev. Cell Dev. Biol
, vol.17
, pp. 189-214
-
-
Irvine, K.D.1
Rauskolb, C.2
-
21
-
-
61349127943
-
A model of axis determination mechanism for Drosophila wing disc
-
D. Floreano, J. D. Nicoud, and F. Mondada, editors. Springer-Verlag, Berlin
-
Kyoda, K., and H. Kitano. 1999. A model of axis determination mechanism for Drosophila wing disc. In Advances of Artificial Life. D. Floreano, J. D. Nicoud, and F. Mondada, editors. Springer-Verlag, Berlin.
-
(1999)
Advances of Artificial Life
-
-
Kyoda, K.1
Kitano, H.2
-
22
-
-
33751349968
-
Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the Drosophila wing imaginal disc
-
González, A., C. Chaouiya, and D. Thieffry. 2006. Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the Drosophila wing imaginal disc. Genetics. 174:1625-1634.
-
(2006)
Genetics
, vol.174
, pp. 1625-1634
-
-
González, A.1
Chaouiya, C.2
Thieffry, D.3
-
23
-
-
39549106878
-
Robustness and stability of the gene regulatory network involved in DV boundary formation in the Drosophila wing
-
Buceta, J., H. Herranz, O. Canela-Xandri, R. Reigada, F. Sagués, and M. Milán. 2007. Robustness and stability of the gene regulatory network involved in DV boundary formation in the Drosophila wing. PLoS ONE. 2:e602.
-
(2007)
PLoS ONE
, vol.2
-
-
Buceta, J.1
Herranz, H.2
Canela-Xandri, O.3
Reigada, R.4
Sagués, F.5
Milán, M.6
-
24
-
-
14844357203
-
Wnt1 regulates neurogenesis and mediates lateral inhibition of boundary cell specification in the zebrafish hindbrain
-
Amoyel, M., Y. C. Cheng, Y. J. Jiang, and D. G. Wilkinson. 2005. Wnt1 regulates neurogenesis and mediates lateral inhibition of boundary cell specification in the zebrafish hindbrain. Development. 132:775-785.
-
(2005)
Development
, vol.132
, pp. 775-785
-
-
Amoyel, M.1
Cheng, Y.C.2
Jiang, Y.J.3
Wilkinson, D.G.4
-
25
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
Alon, U. 2007. Network motifs: theory and experimental approaches. Nat. Rev. Genet. 8:450-461.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
26
-
-
27644443808
-
Cross talking of network motifs in gene regulation that generates temporal pulses and spatial stripes
-
Ishihara, S., K. Fujimoto, and T. Shibata. 2005. Cross talking of network motifs in gene regulation that generates temporal pulses and spatial stripes. Genes Cells. 10:1025-1038.
-
(2005)
Genes Cells
, vol.10
, pp. 1025-1038
-
-
Ishihara, S.1
Fujimoto, K.2
Shibata, T.3
-
27
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
Kepler, T. B., and T. C. Elston. 2001. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys. J. 81:3116-3136.
-
(2001)
Biophys. J
, vol.81
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
28
-
-
0038241770
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
-
Atkinson, M. R., M. A. Savageau, J. T. Myers, and A. J. Ninfa. 2003. Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell. 113:597-607.
-
(2003)
Cell
, vol.113
, pp. 597-607
-
-
Atkinson, M.R.1
Savageau, M.A.2
Myers, J.T.3
Ninfa, A.J.4
-
29
-
-
2342464752
-
Enhancement of the stability of genetic switches by overlapping upstream regulatory domains
-
Warren, P. B., and P. R. ten Wolde. 2004. Enhancement of the stability of genetic switches by overlapping upstream regulatory domains. Phys. Rev. Lett. 92:128101.
-
(2004)
Phys. Rev. Lett
, vol.92
, pp. 128101
-
-
Warren, P.B.1
ten Wolde, P.R.2
-
30
-
-
2942614884
-
Programmable cells: Interfacing natural and engineered gene networks
-
Kobayashi, H., M. Kærn, M. Araki, K. Chung, T. S. Gardner, C. R. Cantor, and J. J. Collins. 2004. Programmable cells: interfacing natural and engineered gene networks. Proc. Natl. Acad. Sci. USA. 101:8414-8419.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8414-8419
-
-
Kobayashi, H.1
Kærn, M.2
Araki, M.3
Chung, K.4
Gardner, T.S.5
Cantor, C.R.6
Collins, J.J.7
-
31
-
-
18144425774
-
Sampling rare switching events in biochemical networks
-
Allen, R. J., P. B. Warren, and P. R. ten Wolde. 2005. Sampling rare switching events in biochemical networks. Phys. Rev. Lett. 94:018104.
-
(2005)
Phys. Rev. Lett
, vol.94
, pp. 018104
-
-
Allen, R.J.1
Warren, P.B.2
ten Wolde, P.R.3
-
32
-
-
33744811457
-
Stochastic models for regulatory networks of the genetic toggle switch
-
Tian, T., and K. Burrage. 2006. Stochastic models for regulatory networks of the genetic toggle switch. Proc. Natl. Acad. Sci. USA. 103:8372-8377.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8372-8377
-
-
Tian, T.1
Burrage, K.2
-
33
-
-
33646397850
-
Genetic toggle switch without cooperative binding
-
Lipshtat, A., A. Loinger, N. Q. Balaban, and O. Biham. 2006. Genetic toggle switch without cooperative binding. Phys. Rev. Lett. 96:188101.
-
(2006)
Phys. Rev. Lett
, vol.96
, pp. 188101
-
-
Lipshtat, A.1
Loinger, A.2
Balaban, N.Q.3
Biham, O.4
-
34
-
-
34547360659
-
Understanding stochastic simulations of the smallest genetic networks
-
Schultz, D., J. N. Onuchic, and P. G. Wolynes. 2007. Understanding stochastic simulations of the smallest genetic networks. J. Chem. Phys. 126:245102.
-
(2007)
J. Chem. Phys
, vol.126
, pp. 245102
-
-
Schultz, D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
35
-
-
43649100468
-
Reaction coordinates for the flipping of genetic switches
-
Morelli, M. J., S. Tanase-Nicola, R. J. Allen, and P. R. ten Wolde. 2008. Reaction coordinates for the flipping of genetic switches. Biophys. J. 94:3413-3423.
-
(2008)
Biophys. J
, vol.94
, pp. 3413-3423
-
-
Morelli, M.J.1
Tanase-Nicola, S.2
Allen, R.J.3
ten Wolde, P.R.4
-
36
-
-
0033617522
-
Notch signaling: Cell fate control and signal integration in development
-
Artavanis-Tsakonas, S., M. D. Rand, and R. J. Blake. 1999. Notch signaling: cell fate control and signal integration in development. Science. 30:770-776.
-
(1999)
Science
, vol.30
, pp. 770-776
-
-
Artavanis-Tsakonas, S.1
Rand, M.D.2
Blake, R.J.3
-
37
-
-
0031456158
-
Wnt signaling: A common theme in animal development
-
Cadigan, K. M., and R. Nusse. 1997. Wnt signaling: a common theme in animal development. Genes Dev. 11:3286-3305.
-
(1997)
Genes Dev
, vol.11
, pp. 3286-3305
-
-
Cadigan, K.M.1
Nusse, R.2
-
38
-
-
0029585601
-
Serrate signals through Notch to establish a Wingless-dependent organizer at the dorsal/ventral compartment boundary of the Drosophila wing
-
Díaz-Benjumea, F. J., and S. M. Cohen. 1995. Serrate signals through Notch to establish a Wingless-dependent organizer at the dorsal/ventral compartment boundary of the Drosophila wing. Development. 121:4215-4225.
-
(1995)
Development
, vol.121
, pp. 4215-4225
-
-
Díaz-Benjumea, F.J.1
Cohen, S.M.2
-
39
-
-
0030776397
-
Feed-back mechanisms affecting Notch activation at the dorsoventral boundary in the Drosophila wing
-
de Celis, J. F., and S. Bray. 1997. Feed-back mechanisms affecting Notch activation at the dorsoventral boundary in the Drosophila wing. Development. 124:3241-3251.
-
(1997)
Development
, vol.124
, pp. 3241-3251
-
-
de Celis, J.F.1
Bray, S.2
-
40
-
-
0030450052
-
The segment polarity gene Porcupine encodes a putative multitransmembrane protein involved in Wingless processing
-
Kadowaki, T., E. Wilder, J. Klingensmith, K. Zachary, and N. Perrimon. 1996. The segment polarity gene Porcupine encodes a putative multitransmembrane protein involved in Wingless processing. Genes Dev. 10:3116-3128.
-
(1996)
Genes Dev
, vol.10
, pp. 3116-3128
-
-
Kadowaki, T.1
Wilder, E.2
Klingensmith, J.3
Zachary, K.4
Perrimon, N.5
-
41
-
-
0033398530
-
Wingless transduction by the Frizzled and Frizzled2 proteins of Drosophila
-
Chen, C. M., and G. Struhl. 1999. Wingless transduction by the Frizzled and Frizzled2 proteins of Drosophila. Development. 126:5441-5452.
-
(1999)
Development
, vol.126
, pp. 5441-5452
-
-
Chen, C.M.1
Struhl, G.2
-
42
-
-
0029670476
-
Interaction between wingless and notch signaling pathways mediated by Disheveled
-
Axelrod, J. D., K. Matsuno, S. Artavanis-Tsakonas, and N. Perrimon. 1996. Interaction between wingless and notch signaling pathways mediated by Disheveled. Science. 271:1826-1832.
-
(1996)
Science
, vol.271
, pp. 1826-1832
-
-
Axelrod, J.D.1
Matsuno, K.2
Artavanis-Tsakonas, S.3
Perrimon, N.4
-
43
-
-
0030918403
-
The function and regulation of cut expression on the wing margin of Drosophila: Notch, Wingless and a dominant negative role for Delta and Serrate
-
Micchelli, C. A., E. J. Rulifson, and S. S. Blair. 1997. The function and regulation of cut expression on the wing margin of Drosophila: Notch, Wingless and a dominant negative role for Delta and Serrate. Development. 124:1485-1495.
-
(1997)
Development
, vol.124
, pp. 1485-1495
-
-
Micchelli, C.A.1
Rulifson, E.J.2
Blair, S.S.3
-
44
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld, N., J. W. Young, U. Alon, P. S. Swain, and M. B. Elowitz. 2005. Gene regulation at the single-cell level. Science. 307:1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
46
-
-
0033852916
-
Temporal regulation of Apterous activity during development of the Drosophila wing
-
Milan, M., and S. M. Cohen. 2000. Temporal regulation of Apterous activity during development of the Drosophila wing. Development. 127:3069-3078.
-
(2000)
Development
, vol.127
, pp. 3069-3078
-
-
Milan, M.1
Cohen, S.M.2
-
47
-
-
0001422329
-
Quantitative model for gene regulation by lambda phage repressor
-
Ackers, G. K., A. D. Johnson, and M. A. Shea. 1982. Quantitative model for gene regulation by lambda phage repressor. Proc. Natl. Acad. Sci. USA. 79:1129-1133.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 1129-1133
-
-
Ackers, G.K.1
Johnson, A.D.2
Shea, M.A.3
-
48
-
-
0029904837
-
Wingless refines its own expression domain on the Drosophila wing margin
-
Rulifson, E. J., C. A. Micchelli, J. D. Axelrod, N. Perrimon, and S. S. Blair. 1996. Wingless refines its own expression domain on the Drosophila wing margin. Nature. 384:72-74.
-
(1996)
Nature
, vol.384
, pp. 72-74
-
-
Rulifson, E.J.1
Micchelli, C.A.2
Axelrod, J.D.3
Perrimon, N.4
Blair, S.S.5
-
49
-
-
22544467427
-
Physical limits to biochemical signaling
-
Bialek, W., and S. Setayeshgar. 2005. Physical limits to biochemical signaling. Proc. Natl. Acad. Sci. USA. 102:10040-10045.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 10040-10045
-
-
Bialek, W.1
Setayeshgar, S.2
|