메뉴 건너뛰기




Volumn 2, Issue 5, 2006, Pages 417-428

Reverse engineering the gap gene network of Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION;

EID: 33646901020     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0020051     Document Type: Article
Times cited : (160)

References (54)
  • 1
    • 0023635756 scopus 로고
    • The molecular basis for metameric pattern in the Drosophila embryo
    • Akam M (1987) The molecular basis for metameric pattern in the Drosophila embryo. Development 101: 1-22.
    • (1987) Development , vol.101 , pp. 1-22
    • Akam, M.1
  • 2
    • 0024075160 scopus 로고
    • The molecular genetics of embryonic pattern formation in Drosophila
    • Ingham PW (1988) The molecular genetics of embryonic pattern formation in Drosophila. Nature 335: 25-34.
    • (1988) Nature , vol.335 , pp. 25-34
    • Ingham, P.W.1
  • 3
    • 0030281034 scopus 로고    scopus 로고
    • From gradients to stripes in Drosophila embryogenesis: Filling in the gaps
    • Rivera-Pomar R, Jäckle H (1996) From gradients to stripes in Drosophila embryogenesis: Filling in the gaps. Trends Genet 12: 478-483.
    • (1996) Trends Genet , vol.12 , pp. 478-483
    • Rivera-Pomar, R.1    Jäckle, H.2
  • 4
    • 0035928464 scopus 로고    scopus 로고
    • A logical analysis of the gap gene system
    • Sanchez L, Thieffry D (2001) A logical analysis of the gap gene system. J Theor Biol 211: 115-141.
    • (2001) J Theor Biol , vol.211 , pp. 115-141
    • Sanchez, L.1    Thieffry, D.2
  • 6
    • 3142734333 scopus 로고    scopus 로고
    • Dynamic control of positional information in the early Drosophila embryo
    • Jaeger J, Surkova S, Blagov M, Janssens H, Kosman D, et al. (2004) Dynamic control of positional information in the early Drosophila embryo. Nature 430: 368-371.
    • (2004) Nature , vol.430 , pp. 368-371
    • Jaeger, J.1    Surkova, S.2    Blagov, M.3    Janssens, H.4    Kosman, D.5
  • 7
    • 4644363054 scopus 로고    scopus 로고
    • Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster
    • Jaeger J, Blagov M, Kosman D, Kozlov KN, Manu, et al. (2004) Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics 167: 1721-1737.
    • (2004) Genetics , vol.167 , pp. 1721-1737
    • Jaeger, J.1    Blagov, M.2    Kosman, D.3    Kozlov, K.N.4    Manu5
  • 8
    • 0032612220 scopus 로고    scopus 로고
    • Linear modeling of mRNA expression levels during CNS development and injury
    • D'Haeseleer P, Wen X, Fuhrman S, Somogyi R (1999) Linear modeling of mRNA expression levels during CNS development and injury. Pac Symp Biocomput 3: 41-52.
    • (1999) Pac Symp Biocomput , vol.3 , pp. 41-52
    • D'Haeseleer, P.1    Wen, X.2    Fuhrman, S.3    Somogyi, R.4
  • 9
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • U S A
    • Yeung MKS, Tegner J, Collins JJ (2002) Reverse engineering gene networks using singular value decomposition and robust regression. Proc Natl Acad Sci U S A 99: 6163-6168.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 6163-6168
    • Yeung, M.K.S.1    Tegner, J.2    Collins, J.J.3
  • 10
    • 0342625542 scopus 로고    scopus 로고
    • Parallel simulated annealing by mixing of states
    • Chu KW, Deng Y, Reinitz J (1999) Parallel simulated annealing by mixing of states. J Comput Phys 148: 646-662.
    • (1999) J Comput Phys , vol.148 , pp. 646-662
    • Chu, K.W.1    Deng, Y.2    Reinitz, J.3
  • 12
    • 4644304105 scopus 로고    scopus 로고
    • Pattern formation and nuclear divisions are uncoupled in Drosophila segmentation: Comparison of spatially discrete and continuous models
    • Gursky VV, Jaeger J, Kozlov KN, Reinitz J, Samsonov AM (2004) Pattern formation and nuclear divisions are uncoupled in Drosophila segmentation: Comparison of spatially discrete and continuous models. Physica D 197: 286-302.
    • (2004) Physica D , vol.197 , pp. 286-302
    • Gursky, V.V.1    Jaeger, J.2    Kozlov, K.N.3    Reinitz, J.4    Samsonov, A.M.5
  • 13
    • 0032555224 scopus 로고    scopus 로고
    • Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis
    • Mendoza L, Alvarez-Buylla ER (1998) Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. J Theor Biol 193: 307-319.
    • (1998) J Theor Biol , vol.193 , pp. 307-319
    • Mendoza, L.1    Alvarez-Buylla, E.R.2
  • 14
    • 0032879544 scopus 로고    scopus 로고
    • Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis
    • Mendoza L, Thieffry D, Alvarez-Buylla ER (1999) Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis. Bioinformatics 14: 593-696.
    • (1999) Bioinformatics , vol.14 , pp. 593-696
    • Mendoza, L.1    Thieffry, D.2    Alvarez-Buylla, E.R.3
  • 15
    • 0037686112 scopus 로고    scopus 로고
    • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
    • Albert R, Othmer HG (2003) The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. J Theor Biol 223: 1-18.
    • (2003) J Theor Biol , vol.223 , pp. 1-18
    • Albert, R.1    Othmer, H.G.2
  • 16
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • Yuh CH, Bolouri H, Davidson EH (1998) Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene. Science 279: 1896-1902.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 17
    • 0038610819 scopus 로고    scopus 로고
    • Detailed map of a cis-regulatory input function
    • U S A
    • Setty Y, Mayo AE, Surette MG, Alon U (2003) Detailed map of a cis-regulatory input function. Proc Natl Acad Sci U S A 100: 7702-7707.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 7702-7707
    • Setty, Y.1    Mayo, A.E.2    Surette, M.G.3    Alon, U.4
  • 19
    • 0026006495 scopus 로고
    • Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
    • Shermoen AW, O'Farrell PH (1991) Progression of the cell cycle through mitosis leads to abortion of nascent transcripts. Cell 97: 303-310.
    • (1991) Cell , vol.97 , pp. 303-310
    • Shermoen, A.W.1    O'Farrell, P.H.2
  • 20
    • 0024569785 scopus 로고
    • The Bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo
    • Driever W, Nüsslein-Volhard C (1989) The Bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo. Nature 337: 138-143.
    • (1989) Nature , vol.337 , pp. 138-143
    • Driever, W.1    Nüsslein-Volhard, C.2
  • 21
    • 0023847985 scopus 로고
    • Regulation of the Drosophila segmentation gene hunchback by two maternal morphogenetic centres
    • Tautz D (1988) Regulation of the Drosophila segmentation gene hunchback by two maternal morphogenetic centres. Nature 332: 281-284.
    • (1988) Nature , vol.332 , pp. 281-284
    • Tautz, D.1
  • 22
    • 0026062340 scopus 로고
    • Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes
    • Eldon ED, Pirrotta V (1991) Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes. Development 111: 367-378.
    • (1991) Development , vol.111 , pp. 367-378
    • Eldon, E.D.1    Pirrotta, V.2
  • 23
    • 0025353654 scopus 로고
    • Cis-acting control elements for Krüppel expression in the Drosophila embryo
    • Hoch M, Schröder C, Seifert E, Jäckle H (1990) Cis-acting control elements for Krüppel expression in the Drosophila embryo. EMBO J 9: 2587-2595.
    • (1990) EMBO J , vol.9 , pp. 2587-2595
    • Hoch, M.1    Schröder, C.2    Seifert, E.3    Jäckle, H.4
  • 24
    • 0025861602 scopus 로고
    • Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens Bicoid and Hunchback
    • Hoch M, Seifert E, Jäckle H (1991) Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens Bicoid and Hunchback. EMBO J 10: 2267-2278.
    • (1991) EMBO J , vol.10 , pp. 2267-2278
    • Hoch, M.1    Seifert, E.2    Jäckle, H.3
  • 25
    • 0029015420 scopus 로고
    • Activation of posterior gap gene expression in the Drosophila blastoderm
    • Rivera-Pomar R, Lu X, Perrimon N, Taubert H, Jäckle H (1995) Activation of posterior gap gene expression in the Drosophila blastoderm. Nature 376: 253-256.
    • (1995) Nature , vol.376 , pp. 253-256
    • Rivera-Pomar, R.1    Lu, X.2    Perrimon, N.3    Taubert, H.4    Jäckle, H.5
  • 26
    • 0025155198 scopus 로고
    • Pattern formation under the control of the terminal system in the Drosophila embryo
    • Casanova J (1990) Pattern formation under the control of the terminal system in the Drosophila embryo. Development 110: 621-628.
    • (1990) Development , vol.110 , pp. 621-628
    • Casanova, J.1
  • 27
    • 0025297418 scopus 로고
    • Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila
    • Reinitz J, Levine M (1990) Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila. Dev Biol 140: 57-72.
    • (1990) Dev Biol , vol.140 , pp. 57-72
    • Reinitz, J.1    Levine, M.2
  • 28
    • 0025999610 scopus 로고
    • Control and function of terminal gap gene activity in the posterior pole region of the Drosophila embryo
    • Brönner G, Jäckle H (1991) Control and function of terminal gap gene activity in the posterior pole region of the Drosophila embryo. Mech Dev 35: 205-211.
    • (1991) Mech Dev , vol.35 , pp. 205-211
    • Brönner, G.1    Jäckle, H.2
  • 29
    • 0026548857 scopus 로고
    • Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel
    • Hoch M, Gerwin N, Taubert H, Jäckle H (1992) Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel. Science 256: 94-97.
    • (1992) Science , vol.256 , pp. 94-97
    • Hoch, M.1    Gerwin, N.2    Taubert, H.3    Jäckle, H.4
  • 30
    • 0026507562 scopus 로고
    • Spatial control of the gap gene knirps in the Drosophila embryo by posterior morphogen system
    • Pankratz MJ, Busch M, Hoch M, Seifert E, Jäckle H (1992) Spatial control of the gap gene knirps in the Drosophila embryo by posterior morphogen system. Science 255: 986-989.
    • (1992) Science , vol.255 , pp. 986-989
    • Pankratz, M.J.1    Busch, M.2    Hoch, M.3    Seifert, E.4    Jäckle, H.5
  • 31
    • 0024856298 scopus 로고
    • Krüppel requirement for knirps enhancement reflects overlapping gap gene activities in the Drosophila embryo
    • Pankratz MJ, Hoch M, Seifert E, Jäckle H (1989) Krüppel requirement for knirps enhancement reflects overlapping gap gene activities in the Drosophila embryo. Nature 341: 337-340.
    • (1989) Nature , vol.341 , pp. 337-340
    • Pankratz, M.J.1    Hoch, M.2    Seifert, E.3    Jäckle, H.4
  • 32
    • 0025981572 scopus 로고
    • Spatial regulation of the gap gene giant during Drosophila development
    • Kraut R, Levine M (1991) Spatial regulation of the gap gene giant during Drosophila development. Development 111: 601-609.
    • (1991) Development , vol.111 , pp. 601-609
    • Kraut, R.1    Levine, M.2
  • 33
    • 0025981573 scopus 로고
    • Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo
    • Kraut R, Levine M (1991) Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo. Development 111: 611-621.
    • (1991) Development , vol.111 , pp. 611-621
    • Kraut, R.1    Levine, M.2
  • 34
    • 0025986670 scopus 로고
    • Dual role of the Drosophila pattern gene tailless in embryonic termini
    • Steingrimsson E, Pignoni F, Liaw GJ, Lengyel JA (1991) Dual role of the Drosophila pattern gene tailless in embryonic termini. Science 254: 418-421.
    • (1991) Science , vol.254 , pp. 418-421
    • Steingrimsson, E.1    Pignoni, F.2    Liaw, G.J.3    Lengyel, J.A.4
  • 35
    • 0026547230 scopus 로고
    • The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes
    • Capovilla M, Eldon ED, Pirrotta V (1992) The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes. Development 114: 99-112.
    • (1992) Development , vol.114 , pp. 99-112
    • Capovilla, M.1    Eldon, E.D.2    Pirrotta, V.3
  • 36
    • 0025328332 scopus 로고
    • A morphogenetic gradient of Hunchback protein organizes the expression of the gap genes Krüppel and knirps in the early Drosophila embryo
    • Hülskamp M, Pfeifle C, Tautz D (1990) A morphogenetic gradient of Hunchback protein organizes the expression of the gap genes Krüppel and knirps in the early Drosophila embryo. Nature 346: 577-580.
    • (1990) Nature , vol.346 , pp. 577-580
    • Hülskamp, M.1    Pfeifle, C.2    Tautz, D.3
  • 37
    • 0028360773 scopus 로고
    • Identical transacting factor requirement for knirps and knirps-related gene expression in the anterior but not in the posterior region of the Drosophila embryo
    • Rothe M, Wimmer EA, Pankratz MJ, González-Gaitán M, Jäckle H (1994) Identical transacting factor requirement for knirps and knirps-related gene expression in the anterior but not in the posterior region of the Drosophila embryo. Mech Dev 46: 169-181.
    • (1994) Mech Dev , vol.46 , pp. 169-181
    • Rothe, M.1    Wimmer, E.A.2    Pankratz, M.J.3    González-Gaitán, M.4    Jäckle, H.5
  • 38
    • 0347987855 scopus 로고    scopus 로고
    • A self-organizing system of repressor gradients establishes segmental complexity in Drosophila
    • Clyde DE, Corado MSG, Wu X, Paré A, Papatsenko D, et al. (2003) A self-organizing system of repressor gradients establishes segmental complexity in Drosophila. Nature 426: 849-853.
    • (2003) Nature , vol.426 , pp. 849-853
    • Clyde, D.E.1    Corado, M.S.G.2    Wu, X.3    Paré, A.4    Papatsenko, D.5
  • 39
    • 0023032969 scopus 로고
    • Cross-regulatory interactions among the gap genes of Drosophila
    • Jäckle H, Tautz D, Schuh R, Seifert E, Lehmann R (1986) Cross-regulatory interactions among the gap genes of Drosophila. Nature 324: 668-670.
    • (1986) Nature , vol.324 , pp. 668-670
    • Jäckle, H.1    Tautz, D.2    Schuh, R.3    Seifert, E.4    Lehmann, R.5
  • 40
    • 0023661274 scopus 로고
    • Pole region-dependent repression of the Drosophila gap gene Krüppel by maternal gene products
    • Gaul U, Jäckle H (1987) Pole region-dependent repression of the Drosophila gap gene Krüppel by maternal gene products. Cell 51: 549-555.
    • (1987) Cell , vol.51 , pp. 549-555
    • Gaul, U.1    Jäckle, H.2
  • 41
    • 33646910935 scopus 로고
    • Analysis of maternal effect mutant combinations elucidates regulation and function of the overlap of hunchback and Krüppel gene expression in the Drosophila blastoderm embryo
    • Gaul U, Jäckle H (1989) Analysis of maternal effect mutant combinations elucidates regulation and function of the overlap of hunchback and Krüppel gene expression in the Drosophila blastoderm embryo. Development 120: 3155-3171.
    • (1989) Development , vol.120 , pp. 3155-3171
    • Gaul, U.1    Jäckle, H.2
  • 42
    • 0028021851 scopus 로고
    • Synergy between the Hunchback and Bicoid morphogens is required for anterior patterning in Drosophila
    • Simpson-Brose M, Treisman J, Desplan C (1994) Synergy between the Hunchback and Bicoid morphogens is required for anterior patterning in Drosophila. Cell 78: 855-865.
    • (1994) Cell , vol.78 , pp. 855-865
    • Simpson-Brose, M.1    Treisman, J.2    Desplan, C.3
  • 43
    • 0025221552 scopus 로고
    • Dose-dependent regulation of pair-rule stripes by gap proteins and the initiation of segment polarity
    • Warrior R, Levine M (1990) Dose-dependent regulation of pair-rule stripes by gap proteins and the initiation of segment polarity. Development 110: 759-767.
    • (1990) Development , vol.110 , pp. 759-767
    • Warrior, R.1    Levine, M.2
  • 44
    • 0026532170 scopus 로고
    • Control of Drosophila body pattern by the hunchback morphogen gradient
    • Struhl G, Johnston P, Lawrence PA (1992) Control of Drosophila body pattern by the hunchback morphogen gradient. Cell 69: 237-249.
    • (1992) Cell , vol.69 , pp. 237-249
    • Struhl, G.1    Johnston, P.2    Lawrence, P.A.3
  • 45
    • 0028149131 scopus 로고
    • Autonomous concentration-dependent activation and repression of Krüppel by hunchback in the Drosophila embryo
    • Schulz C, Tautz D (1994) Autonomous concentration-dependent activation and repression of Krüppel by hunchback in the Drosophila embryo. Development 120: 3043-3049.
    • (1994) Development , vol.120 , pp. 3043-3049
    • Schulz, C.1    Tautz, D.2
  • 46
    • 0024316728 scopus 로고
    • A novel spatial transcription pattern associated with the segmentation gene, giant, of Drosophila
    • Mohler J, Eldon ED, Pirrotta V (1989) A novel spatial transcription pattern associated with the segmentation gene, giant, of Drosophila. EMBO J 8: 1539-1548.
    • (1989) EMBO J , vol.8 , pp. 1539-1548
    • Mohler, J.1    Eldon, E.D.2    Pirrotta, V.3
  • 47
    • 0023198664 scopus 로고
    • Finger protein of novel structure encoded by hunchback, a second member of the gap class of Drosophila segmentation genes
    • Tautz D, Lehmann R, Schnü rch H, Schuh R, Seifert E, et al. (1987) Finger protein of novel structure encoded by hunchback, a second member of the gap class of Drosophila segmentation genes. Nature 327: 383-389.
    • (1987) Nature , vol.327 , pp. 383-389
    • Tautz, D.1    Lehmann, R.2    Schnürch, H.3    Schuh, R.4    Seifert, E.5
  • 48
    • 0031824633 scopus 로고    scopus 로고
    • Prediction of mutant expression patterns using gene circuits
    • Sharp DH, Reinitz J (1998) Prediction of mutant expression patterns using gene circuits. Biosystems 47: 79-90.
    • (1998) Biosystems , vol.47 , pp. 79-90
    • Sharp, D.H.1    Reinitz, J.2
  • 49
    • 0031814029 scopus 로고    scopus 로고
    • Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins
    • Kosman D, Small S, Reinitz J (1998) Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Dev Genes Evol 208: 290-294.
    • (1998) Dev Genes Evol , vol.208 , pp. 290-294
    • Kosman, D.1    Small, S.2    Reinitz, J.3
  • 50
    • 0035115973 scopus 로고    scopus 로고
    • Registration of the expression patterns of Drosophila segmentation genes by two independent methods
    • Myasnikova E, Samsonova A, Kozlov K, Samsonova M, Reinitz J (2001) Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinformatics 17: 3-12.
    • (2001) Bioinformatics , vol.17 , pp. 3-12
    • Myasnikova, E.1    Samsonova, A.2    Kozlov, K.3    Samsonova, M.4    Reinitz, J.5
  • 51
    • 22844442948 scopus 로고    scopus 로고
    • A high-throughput method for quantifying gene expression data from early Drosophila embryos
    • Janssens H, Kosman D, Vanario-Alonso CE, Jaeger J, Samsonova M, et al. (2005) A high-throughput method for quantifying gene expression data from early Drosophila embryos. Dev Genes Evol 215: 374-381.
    • (2005) Dev Genes Evol , vol.215 , pp. 374-381
    • Janssens, H.1    Kosman, D.2    Vanario-Alonso, C.E.3    Jaeger, J.4    Samsonova, M.5
  • 52
    • 21344474605 scopus 로고    scopus 로고
    • Removal of background signal from in situ data on the expression of segmentation gene in Drosophila
    • Myasnikova E, Samsonova M, Kosman D, Reinitz J (2005) Removal of background signal from in situ data on the expression of segmentation gene in Drosophila. Dev Genes Evol 215: 320-326.
    • (2005) Dev Genes Evol , vol.215 , pp. 320-326
    • Myasnikova, E.1    Samsonova, M.2    Kosman, D.3    Reinitz, J.4
  • 53
    • 0020531221 scopus 로고
    • Studies of nuclear and cytoplasmic behaviour during the five mitotic cycles that precede gastrulation in Drosophila embryogenesis
    • Foe VE, Alberts BM (1983) Studies of nuclear and cytoplasmic behaviour during the five mitotic cycles that precede gastrulation in Drosophila embryogenesis. J Cell Sci 61: 31-70.
    • (1983) J Cell Sci , vol.61 , pp. 31-70
    • Foe, V.E.1    Alberts, B.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.