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Volumn 10, Issue 11, 2005, Pages 1025-1038

Cross talking of network motifs in gene regulation that generates temporal pulses and spatial stripes

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

EID: 27644443808     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2005.00897.x     Document Type: Article
Times cited : (83)

References (41)
  • 1
    • 2342578714 scopus 로고    scopus 로고
    • Spatiotemporal control of gene expression with pulse-generating networks
    • Basu, S., Mehreja, R., Thiberge, S., Chen, M.T. & Weiss, R. (2004) Spatiotemporal control of gene expression with pulse-generating networks. Proc. Natl. Acad. Sci. USA 101, 6355-6360.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 6355-6360
    • Basu, S.1    Mehreja, R.2    Thiberge, S.3    Chen, M.T.4    Weiss, R.5
  • 2
  • 3
    • 0034747024 scopus 로고    scopus 로고
    • YPD, PombePD and WormPD: Model organism volumes of the BioKnowledge Library, an integrated resource for protein information
    • Costanzo, M.C., Crawford, M.E., Hirschman, J.E., et al. (2001) YPD, PombePD and WormPD: model organism volumes of the BioKnowledge Library, an integrated resource for protein information. Nucleic Acids Res. 29, 75-79.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 75-79
    • Costanzo, M.C.1    Crawford, M.E.2    Hirschman, J.E.3
  • 4
    • 2942552376 scopus 로고    scopus 로고
    • Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
    • Dobrin, R., Beg, Q.K., Barabasi, A.L. & Oltvai, Z.N. (2004) Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network. BMC Bioinformatics 5, 10.
    • (2004) BMC Bioinformatics , vol.5 , pp. 10
    • Dobrin, R.1    Beg, Q.K.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 5
    • 0024569785 scopus 로고
    • The bicoid protein is positive regulator of hunchback transcription in the early Drosophila embryo
    • Driever, W. & Nüsslein-Volhard, C. (1989) The bicoid protein is positive regulator of hunchback transcription in the early Drosophila embryo. Nature 337, 138-143.
    • (1989) Nature , vol.337 , pp. 138-143
    • Driever, W.1    Nüsslein-Volhard, C.2
  • 6
    • 8844240734 scopus 로고    scopus 로고
    • The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
    • Eichenberger, P., Fujita, M., Jensen, S.T., et al. (2004) The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. Plos Biol. 2, e328.
    • (2004) Plos. Biol. , vol.2
    • Eichenberger, P.1    Fujita, M.2    Jensen, S.T.3
  • 7
    • 0026062340 scopus 로고
    • Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes
    • Eldon, E.D. & Pirrotta, V. (1991) Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes. Development 111, 367-378.
    • (1991) Development , vol.111 , pp. 367-378
    • Eldon, E.D.1    Pirrotta, V.2
  • 8
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • Gardner, T.S., Cantor, C.R. & Collins, J.J. (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-342.
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 9
    • 0026442926 scopus 로고
    • Responses of embryonic Xenopus cells to activin and FGF are separated by multiple dose thresholds and correspond to distinct axes of the mesoderm
    • Green,J.B., New, H.V. & Smith, J.C. (1992) Responses of embryonic Xenopus cells to activin and FGF are separated by multiple dose thresholds and correspond to distinct axes of the mesoderm. Cell 71, 731-739.
    • (1992) Cell , vol.71 , pp. 731-739
    • Green, J.B.1    New, H.V.2    Smith, J.C.3
  • 10
    • 0028070175 scopus 로고
    • Slow emergence of a multithreshold response to activin requires cell-contact-dependent sharpening but not prepattern
    • Green, J.B., Smith, J.C. & Gerhart, J.C. (1994) Slow emergence of a multithreshold response to activin requires cell-contact-dependent sharpening but not prepattern. Development 120, 2271-2278.
    • (1994) Development , vol.120 , pp. 2271-2278
    • Green, J.B.1    Smith, J.C.2    Gerhart, J.C.3
  • 11
    • 0035950105 scopus 로고    scopus 로고
    • Morphogen gradient interpretation
    • Gurdon, J.B. & Bourillot, P.Y. (2001) Morphogen gradient interpretation. Nature 413, 797-803.
    • (2001) Nature , vol.413 , pp. 797-803
    • Gurdon, J.B.1    Bourillot, P.Y.2
  • 12
    • 0028122987 scopus 로고
    • Activin signalling and response to a morphogen gradient
    • Gurdon, J.B., Harger, P., Mitchell, A. & Lemaire, P. (1994) Activin signalling and response to a morphogen gradient. Nature 371, 487-492.
    • (1994) Nature , vol.371 , pp. 487-492
    • Gurdon, J.B.1    Harger, P.2    Mitchell, A.3    Lemaire, P.4
  • 13
    • 0026548857 scopus 로고
    • Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel
    • Hoch, M., Gerwin, N., Taubert, H. & Jäckle, H. (1992) Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel. Science 256, 94-97.
    • (1992) Science , vol.256 , pp. 94-97
    • Hoch, M.1    Gerwin, N.2    Taubert, H.3    Jäckle, H.4
  • 14
    • 18144363600 scopus 로고    scopus 로고
    • Engineering gene networks to emulate Drosophila embryonic pattern formation
    • Isalan, M., Lemerle, C. & Serrano, L. (2005) Engineering gene networks to emulate Drosophila embryonic pattern formation. Plos Biol. 3, e64.
    • (2005) Plos. Biol. , vol.3
    • Isalan, M.1    Lemerle, C.2    Serrano, L.3
  • 15
    • 0023032969 scopus 로고
    • Cross-regulatory interactions among the gap genes of Drosophila
    • Jäckle, H., Tautz, D., Shuh, R., et al. (1986) Cross-regulatory interactions among the gap genes of Drosophila. Nature 324, 668-670.
    • (1986) Nature , vol.324 , pp. 668-670
    • Jäckle, H.1    Tautz, D.2    Shuh, R.3
  • 16
    • 4644363054 scopus 로고    scopus 로고
    • Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster
    • Jaeger, J., Blagov, M., Kosman, D., et al. (2004a) Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics 167, 1721-1737.
    • (2004) Genetics , vol.167 , pp. 1721-1737
    • Jaeger, J.1    Blagov, M.2    Kosman, D.3
  • 17
    • 3142734333 scopus 로고    scopus 로고
    • Dynamic control of positional information in the early Drosophila embryo
    • Jaeger, J., Surkova, S., Blagov, M, et al. (2004b) Dynamic control of positional information in the early Drosophila embryo. Nature 430, 368-371.
    • (2004) Nature , vol.430 , pp. 368-371
    • Jaeger, J.1    Surkova, S.2    Blagov, M.3
  • 18
    • 2942612846 scopus 로고    scopus 로고
    • Using a quantitative blueprint to reprogram the dynamics of the flagella gene network
    • Kalir, S. & Alon, U. (2004) Using a quantitative blueprint to reprogram the dynamics of the flagella gene network. Cell 117, 713-720.
    • (2004) Cell , vol.117 , pp. 713-720
    • Kalir, S.1    Alon, U.2
  • 19
    • 42749103268 scopus 로고    scopus 로고
    • Topological generalizations of network motifs
    • Kashtan, N., Itzkovitz, S., Milo, R. & Alon, U. (2004) Topological generalizations of network motifs. Phys. Rev. E 70, 031909.
    • (2004) Phys. Rev. E , vol.70 , pp. 031909
    • Kashtan, N.1    Itzkovitz, S.2    Milo, R.3    Alon, U.4
  • 20
    • 0029163545 scopus 로고
    • A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus
    • Kondo, S. & Asai, R. (1995) A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus. Nature 376, 765-768.
    • (1995) Nature , vol.376 , pp. 765-768
    • Kondo, S.1    Asai, R.2
  • 21
    • 0025981572 scopus 로고
    • Spatial regulation of the gap gene giant during Drosophila development
    • Kraut, R. & Levine, M. (1991a) Spatial regulation of the gap gene giant during Drosophila development. Development 111, 601-609.
    • (1991) Development , vol.111 , pp. 601-609
    • Kraut, R.1    Levine, M.2
  • 22
    • 0025981573 scopus 로고
    • Mutually repressive interactions between the gap genes giant and Krüppel define middle body region of the Drosophila embryo
    • Kraut, R. & Levine, M. (1991b) Mutually repressive interactions between the gap genes giant and Krüppel define middle body region of the Drosophila embryo. Development 111, 611-621.
    • (1991) Development , vol.111 , pp. 611-621
    • Kraut, R.1    Levine, M.2
  • 23
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee, T.I., Rinaldi, N.J., Robert, F., et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298, 799-804.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1    Rinaldi, N.J.2    Robert, F.3
  • 24
    • 0027052642 scopus 로고
    • Control of tailless expression by bicoid, dorsal and synergistically interacting terminal system regulatory elements
    • Liaw, G.J. & Lengyel, J.A. (1993) Control of tailless expression by bicoid, dorsal and synergistically interacting terminal system regulatory elements. Mech. Dev. 40, 47-61.
    • (1993) Mech. Dev. , vol.40 , pp. 47-61
    • Liaw, G.J.1    Lengyel, J.A.2
  • 25
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feed-forward loop network motif
    • Mangan, S. & Alon, S. (2003) Structure and function of the feed-forward loop network motif. Proc. Natl. Acad. Sci. USA 100, 11980-11985.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, S.2
  • 26
    • 0242364231 scopus 로고    scopus 로고
    • The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
    • Mangan, S., Zaslaver, A. & Alon, U. (2003) The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J. Mol. Biol. 334, 197-204.
    • (2003) J. Mol. Biol. , vol.334 , pp. 197-204
    • Mangan, S.1    Zaslaver, A.2    Alon, U.3
  • 28
    • 0033868140 scopus 로고    scopus 로고
    • Pattern formation by local self-activation and lateral inhibition
    • Meinhardt, H. & Gierer, A. (2000) Pattern formation by local self-activation and lateral inhibition. Bioessays 22, 753-760.
    • (2000) Bioessays , vol.22 , pp. 753-760
    • Meinhardt, H.1    Gierer, A.2
  • 29
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: Simple building blocks of complex networks
    • Milo, R., Shen-Orr, S., Itzkovitz, S., et al. (2002) Network motifs: simple building blocks of complex networks. Science 298, 824-827.
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3
  • 30
    • 1542287343 scopus 로고    scopus 로고
    • Superfamilies of evolved and designed networks
    • Milo, R., Itzkovitz, S., Kashutan, N., et al. (2004) Superfamilies of evolved and designed networks. Science 303, 1538-1542.
    • (2004) Science , vol.303 , pp. 1538-1542
    • Milo, R.1    Itzkovitz, S.2    Kashutan, N.3
  • 31
    • 3142630279 scopus 로고    scopus 로고
    • Gene regulatory network controlling embryonic specification in the sea urchin
    • Oliveri, P. & Davidson, E.H. (2004) Gene regulatory network controlling embryonic specification in the sea urchin. Curr. Opin. Genet. Dev. 14, 351-360.
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 351-360
    • Oliveri, P.1    Davidson, E.H.2
  • 32
    • 4644220664 scopus 로고    scopus 로고
    • A MyoD-generated feed-forward circuit temporally patterns gene expression during skeletal muscle differentiation
    • Penn, B.H., Bergstorm, D.A., Dilworth, F.J., Bengal, E. & Tapscott, S.J. (2004) A MyoD-generated feed-forward circuit temporally patterns gene expression during skeletal muscle differentiation. Genes Dev. 18, 2348-2353.
    • (2004) Genes Dev. , vol.18 , pp. 2348-2353
    • Penn, B.H.1    Bergstorm, D.A.2    Dilworth, F.J.3    Bengal, E.4    Tapscott, S.J.5
  • 33
    • 0026649985 scopus 로고
    • Bicoid and the terminal system activate tailless expression in the early Drosophila embryo
    • Pignoni, F., Steingrimsson, E. & Lengyel, J.A. (1992) bicoid and the terminal system activate tailless expression in the early Drosophila embryo. Development 115, 239-251.
    • (1992) Development , vol.115 , pp. 239-251
    • Pignoni, F.1    Steingrimsson, E.2    Lengyel, J.A.3
  • 34
    • 0031670890 scopus 로고    scopus 로고
    • Graphical interface to the genetic network database GeNet
    • Selov, V.N., Spirov, A.V. & Samsonova, M.G. (1998) Graphical interface to the genetic network database GeNet. Bioinformatics 14, 546-547.
    • (1998) Bioinformatics , vol.14 , pp. 546-547
    • Selov, V.N.1    Spirov, A.V.2    Samsonova, M.G.3
  • 36
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr, S.S., Milo, R., Mangan, S. & Alon, U. (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genet. 31, 64-68.
    • (2002) Nature Genet. , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 37
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks - Methods, recent results, and future directions
    • Smolen, P., Baxter, D.A. & Byrne, J.H. (2000) Modeling transcriptional control in gene networks - methods, recent results, and future directions. Bull. Math. Biol. 62, 247-292.
    • (2000) Bull. Math. Biol. , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 39
    • 0014593403 scopus 로고
    • Positional information and the spatial pattern of cellar differentiation
    • Wolpert, L. (1969) Positional information and the spatial pattern of cellar differentiation. J. Theor. Biol. 25, 1-47.
    • (1969) J. Theor. Biol. , vol.25 , pp. 1-47
    • Wolpert, L.1
  • 40
    • 0035449397 scopus 로고    scopus 로고
    • Thoracic patterning by the Drosophila gap gene hunchback
    • Wu, X., Vasisht, V., Kosman, D., Reinitz, J. & Small, S. (2001) Thoracic patterning by the Drosophila gap gene hunchback. Dev. Biol. 237, 79-92.
    • (2001) Dev. Biol. , vol.237 , pp. 79-92
    • Wu, X.1    Vasisht, V.2    Kosman, D.3    Reinitz, J.4    Small, S.5
  • 41
    • 1942469444 scopus 로고    scopus 로고
    • Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
    • Yeger-Lotem, E., Sattath, S., Kashtan, N., et al. (2004) Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proc. Natl. Acad. Sci. USA 101, 5934-5939.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 5934-5939
    • Yeger-Lotem, E.1    Sattath, S.2    Kashtan, N.3


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