-
1
-
-
0035910145
-
Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria
-
Aakra A., Utaker J.B., and Nes I.F. Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria. FEMS Microbiol. Lett. 205 (2001) 237-242
-
(2001)
FEMS Microbiol. Lett.
, vol.205
, pp. 237-242
-
-
Aakra, A.1
Utaker, J.B.2
Nes, I.F.3
-
2
-
-
0001818828
-
r- and K-selection and microbial ecology
-
Andrews J.H., and Harris R.F. r- and K-selection and microbial ecology. Adv. Microbiol. Ecol. 9 (1986) 99-147
-
(1986)
Adv. Microbiol. Ecol.
, vol.9
, pp. 99-147
-
-
Andrews, J.H.1
Harris, R.F.2
-
3
-
-
84989732179
-
Radial oxygen losses from intact rice roots as affected by distance from the apex, respiration and water logging
-
Armstrong W. Radial oxygen losses from intact rice roots as affected by distance from the apex, respiration and water logging. Plant Physiol. 25 (1979) 192-197
-
(1979)
Plant Physiol.
, vol.25
, pp. 192-197
-
-
Armstrong, W.1
-
4
-
-
0033911695
-
Nitrification and denitrification in the rhizosphere of rice: the detection of processes by a new multi-channel electrode
-
Arth I., and Frenzel P. Nitrification and denitrification in the rhizosphere of rice: the detection of processes by a new multi-channel electrode. Biol. Fertil. Soils 31 (2000) 427-435
-
(2000)
Biol. Fertil. Soils
, vol.31
, pp. 427-435
-
-
Arth, I.1
Frenzel, P.2
-
5
-
-
0031896822
-
Denitrification coupled to nitrification in the rhizosphere of rice
-
Arth I., Frenzel P., and Conrad R. Denitrification coupled to nitrification in the rhizosphere of rice. Soil Biol. Biochem. 30 (1998) 509-515
-
(1998)
Soil Biol. Biochem.
, vol.30
, pp. 509-515
-
-
Arth, I.1
Frenzel, P.2
Conrad, R.3
-
6
-
-
0036840895
-
2O release and on the community structure of ammonia oxidizers and denitrifiers
-
2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 68 (2002) 5685-5692
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5685-5692
-
-
Avrahami, S.1
Conrad, R.2
Braker, G.3
-
7
-
-
0142040853
-
Patterns of community change among ammonia oxidizers in meadow soil upon long-term incubation at different temperatures
-
Avrahami S., and Conrad R. Patterns of community change among ammonia oxidizers in meadow soil upon long-term incubation at different temperatures. Appl. Environ. Microbiol. 69 (2003) 6152-6164
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6152-6164
-
-
Avrahami, S.1
Conrad, R.2
-
8
-
-
0042197522
-
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
-
Avrahami S., Conrad R., and Liesack W. Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ. Microbiol. 5 (2003) 691-705
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 691-705
-
-
Avrahami, S.1
Conrad, R.2
Liesack, W.3
-
9
-
-
0036794991
-
Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria
-
Bollmann A., Bär-Gilissen M.J., and Laanbroek H.J. Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 68 (2002) 4751-4757
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4751-4757
-
-
Bollmann, A.1
Bär-Gilissen, M.J.2
Laanbroek, H.J.3
-
10
-
-
15444372598
-
Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis
-
Bollmann A., Schmidt I., Saunders A.M., and Nicolaisen M.H. Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis. Appl. Environ. Microbiol. 71 (2005) 1276-1282
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1276-1282
-
-
Bollmann, A.1
Schmidt, I.2
Saunders, A.M.3
Nicolaisen, M.H.4
-
12
-
-
0036276617
-
Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice
-
Briones A.M., Okebe S., Umemiya Y., Ramsing N.B., Reichardt W., and Okuyama H. Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl. Environ. Microbiol. 68 (2002) 3067-3075
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3067-3075
-
-
Briones, A.M.1
Okebe, S.2
Umemiya, Y.3
Ramsing, N.B.4
Reichardt, W.5
Okuyama, H.6
-
13
-
-
0025720921
-
Dinitrogen and nitrous oxide flux from urea basally applied to puddle rice soils
-
Buresh R.J., De Datta S.K., Samson M.I., Phongpan S., Snitwongse P., Fagi A.M., and Tejasarwana R. Dinitrogen and nitrous oxide flux from urea basally applied to puddle rice soils. Soil Sci. Soc. Am. J. 55 (1991) 268-273
-
(1991)
Soil Sci. Soc. Am. J.
, vol.55
, pp. 268-273
-
-
Buresh, R.J.1
De Datta, S.K.2
Samson, M.I.3
Phongpan, S.4
Snitwongse, P.5
Fagi, A.M.6
Tejasarwana, R.7
-
14
-
-
58149332207
-
Ammonia oxidizing archaea: important players in paddy rhizosphere soil?
-
Chen X.P., Zhu Y.G., Xia Y., Shen J.P., and He J.Z. Ammonia oxidizing archaea: important players in paddy rhizosphere soil?. Environ. Microbiol. 10 (2008) 1978-1987
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1978-1987
-
-
Chen, X.P.1
Zhu, Y.G.2
Xia, Y.3
Shen, J.P.4
He, J.Z.5
-
15
-
-
0026120939
-
Direct measurement of ammonia and denitrification fluxes from urea applied to rice
-
De Datta S.K., Buresh R.J., Samaon M.I., Obcemea W.N., and Real J.G. Direct measurement of ammonia and denitrification fluxes from urea applied to rice. Soil Sci. Soc. Am. J. 55 (1991) 543-548
-
(1991)
Soil Sci. Soc. Am. J.
, vol.55
, pp. 543-548
-
-
De Datta, S.K.1
Buresh, R.J.2
Samaon, M.I.3
Obcemea, W.N.4
Real, J.G.5
-
16
-
-
0032824379
-
Nitrification and autotrophic nitrifying bacteria in a hydrocarbon-polluted soil
-
Deni J., and Penninckx M.J. Nitrification and autotrophic nitrifying bacteria in a hydrocarbon-polluted soil. Appl. Environ. Microbiol. 65 (1999) 4008-4013
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4008-4013
-
-
Deni, J.1
Penninckx, M.J.2
-
17
-
-
34248178641
-
New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation
-
Francis C.A., Beman J.M., and Kuypers M.M.M. New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J. 1 (2007) 19-27
-
(2007)
ISME J.
, vol.1
, pp. 19-27
-
-
Francis, C.A.1
Beman, J.M.2
Kuypers, M.M.M.3
-
18
-
-
0027071339
-
Oxygen profiles and methane turnover in a flooded rice microcosm
-
Frenzel P., Rothfuss F., and Conrad R. Oxygen profiles and methane turnover in a flooded rice microcosm. Biol. Fertil. Soils 14 (1992) 84-89
-
(1992)
Biol. Fertil. Soils
, vol.14
, pp. 84-89
-
-
Frenzel, P.1
Rothfuss, F.2
Conrad, R.3
-
20
-
-
33748513298
-
Strategies of aerobic ammonia-oxidizing bacteria for coping with nutrient and oxygen fluctuations
-
Geets J., Boon N., and Verstraete W. Strategies of aerobic ammonia-oxidizing bacteria for coping with nutrient and oxygen fluctuations. FEMS Microbiol. Ecol. 58 (2006) 1-13
-
(2006)
FEMS Microbiol. Ecol.
, vol.58
, pp. 1-13
-
-
Geets, J.1
Boon, N.2
Verstraete, W.3
-
21
-
-
0033988391
-
Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products
-
Horz H.P., Rotthauwe J.H., Lukow T., and Liesack W. Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products. J. Microbiol. Methods 39 (2000) 197-204
-
(2000)
J. Microbiol. Methods
, vol.39
, pp. 197-204
-
-
Horz, H.P.1
Rotthauwe, J.H.2
Lukow, T.3
Liesack, W.4
-
22
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M., Bernhard A.E., de la Torre J.R., Walker C.B., Waterbury J.B., and Stahl D.A. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 (2005) 543-546
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
de la Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
23
-
-
0034548634
-
Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands
-
Kowalchuk G.A., Stienstra A.W., Heiling G.H.J., Stephen J.R., and Woldendorp J.W. Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands. Environ. Microbiol. 2 (2000) 99-110
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 99-110
-
-
Kowalchuk, G.A.1
Stienstra, A.W.2
Heiling, G.H.J.3
Stephen, J.R.4
Woldendorp, J.W.5
-
24
-
-
0034009793
-
Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands)
-
Kowalchuk G.A., Stienstra A.W., Heiling G.H.J., Stephen J.R., and Woldendorp J.W. Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands). FEMS Microbiol. Ecol. 31 (2000) 207-215
-
(2000)
FEMS Microbiol. Ecol.
, vol.31
, pp. 207-215
-
-
Kowalchuk, G.A.1
Stienstra, A.W.2
Heiling, G.H.J.3
Stephen, J.R.4
Woldendorp, J.W.5
-
25
-
-
3242810318
-
Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S., Tamura K., and Nei M. Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings Bioinformatics 5 (2004) 150-163
-
(2004)
Briefings Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
27
-
-
33846111319
-
Spatial variation of active microbiota in the rice rhizosphere revealed by in situ stable isotope probing of phospholipid fatty acids
-
Lu Y.H., Abraham W.R., and Conrad R. Spatial variation of active microbiota in the rice rhizosphere revealed by in situ stable isotope probing of phospholipid fatty acids. Environ. Microbiol. 9 (2007) 474-481
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 474-481
-
-
Lu, Y.H.1
Abraham, W.R.2
Conrad, R.3
-
28
-
-
0034496340
-
Dynamics of dissolved organic carbon and methane emissions in a flooded rice soil
-
Lu Y.H., Wassmann R., Neue H.U., and Huang C.Y. Dynamics of dissolved organic carbon and methane emissions in a flooded rice soil. Soil Sci. Soc. Am. J. 64 (2000) 2011-2017
-
(2000)
Soil Sci. Soc. Am. J.
, vol.64
, pp. 2011-2017
-
-
Lu, Y.H.1
Wassmann, R.2
Neue, H.U.3
Huang, C.Y.4
-
29
-
-
0343503030
-
Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
-
Lüdemann H., Arth I., and Liesack W. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 66 (2000) 754-762
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 754-762
-
-
Lüdemann, H.1
Arth, I.2
Liesack, W.3
-
30
-
-
0038656384
-
Ammonia-oxidizing bacteria along meadow-forest transects in the Oregon cascade mountains
-
Mintie A.T., Heichen R.S., and Cromack K. Ammonia-oxidizing bacteria along meadow-forest transects in the Oregon cascade mountains. Appl. Environ. Microbiol. 69 (2003) 3126-3129
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3126-3129
-
-
Mintie, A.T.1
Heichen, R.S.2
Cromack, K.3
-
31
-
-
4344569176
-
Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in high yield irrigated Philippine rice filed
-
Nicolaisen M.H., Petersen N.R., Revsbech N.P., Reichardt W., and Ramsing N.B. Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in high yield irrigated Philippine rice filed. FEMS Microbiol. Ecol. 49 (2004) 359-369
-
(2004)
FEMS Microbiol. Ecol.
, vol.49
, pp. 359-369
-
-
Nicolaisen, M.H.1
Petersen, N.R.2
Revsbech, N.P.3
Reichardt, W.4
Ramsing, N.B.5
-
32
-
-
0036242855
-
Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
-
Nicolaisen M.H., and Ramsing N.B. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50 (2002) 189-203
-
(2002)
J. Microbiol. Methods
, vol.50
, pp. 189-203
-
-
Nicolaisen, M.H.1
Ramsing, N.B.2
-
33
-
-
14344253895
-
Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
-
Noll M., Matthies D., Frenzel P., Derakshani M., and Liesack W. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 7 (2005) 382-395
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 382-395
-
-
Noll, M.1
Matthies, D.2
Frenzel, P.3
Derakshani, M.4
Liesack, W.5
-
34
-
-
0003482588
-
-
ASA, SSSA, Madison, WI, USA
-
Page A.L., Miller R.H., and Keeney D.R. Methods of Soil Analysis, Part 2 - Chemical and Microbiological Properties. second ed (1982), ASA, SSSA, Madison, WI, USA
-
(1982)
Methods of Soil Analysis, Part 2 - Chemical and Microbiological Properties. second ed
-
-
Page, A.L.1
Miller, R.H.2
Keeney, D.R.3
-
35
-
-
33747341311
-
Occurrence of ammonia oxidizing archaea in wastewater treatment plant bioreactors
-
Park H.D., Wells G.F., Bae H., Criddle C.S., and Francis C.A. Occurrence of ammonia oxidizing archaea in wastewater treatment plant bioreactors. Appl. Environ. Microbiol. 72 (2006) 5643-5647
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5643-5647
-
-
Park, H.D.1
Wells, G.F.2
Bae, H.3
Criddle, C.S.4
Francis, C.A.5
-
36
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys
-
Purkhold U., Pommerening-Roser A., Juretschko S., Schmid M.C., Koops H.P., and Wagner M. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl. Environ. Microbiol. 66 (2000) 5368-5382
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Roser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.P.5
Wagner, M.6
-
37
-
-
0141502465
-
16S rRNA and amoA-based phylogeny of 12 novel betaprobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads
-
Purkhold U., Wagner M., Timmermann G., Röser P., and Koops H.P. 16S rRNA and amoA-based phylogeny of 12 novel betaprobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int. J. Syst. Evol. Microbiol. 53 (2003) 1483-1494
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1483-1494
-
-
Purkhold, U.1
Wagner, M.2
Timmermann, G.3
Röser, P.4
Koops, H.P.5
-
38
-
-
33846658320
-
Investigation of total bacterial and ammonia-oxidizing bacterial community composition in a full-scale aerated submerged biofilm reactor for drinking water pretreatment in China
-
Qin Y.Y., Li D.T., and Yang H. Investigation of total bacterial and ammonia-oxidizing bacterial community composition in a full-scale aerated submerged biofilm reactor for drinking water pretreatment in China. FEMS Microbiol. Lett. 268 (2007) 126-134
-
(2007)
FEMS Microbiol. Lett.
, vol.268
, pp. 126-134
-
-
Qin, Y.Y.1
Li, D.T.2
Yang, H.3
-
39
-
-
0035214384
-
Nitrate-dependent iron (II) oxidation in paddy soil
-
Ratering S., and Schnell S. Nitrate-dependent iron (II) oxidation in paddy soil. Environ. Microbiol. 3 (2001) 100-109
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 100-109
-
-
Ratering, S.1
Schnell, S.2
-
40
-
-
0032818834
-
Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions
-
Revsbech N.P., Pedersen O., Reichardt W., and Briones A. Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions. Biol. Fertil. Soils 29 (1999) 379-385
-
(1999)
Biol. Fertil. Soils
, vol.29
, pp. 379-385
-
-
Revsbech, N.P.1
Pedersen, O.2
Reichardt, W.3
Briones, A.4
-
41
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe J.H., Witzel K.P., and Liesack W. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63 (1997) 4704-4712
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4704-4712
-
-
Rotthauwe, J.H.1
Witzel, K.P.2
Liesack, W.3
-
42
-
-
0032812283
-
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microelectrodes
-
Schramm A., de Beer D., van den Heuvel J.C., Ottengraf S., and Amann R. Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol. 65 (1999) 3690-3696
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3690-3696
-
-
Schramm, A.1
de Beer, D.2
van den Heuvel, J.C.3
Ottengraf, S.4
Amann, R.5
-
43
-
-
0031684927
-
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
-
Schramm A., de Beer D., Wagner M., and Amann R. Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl. Environ. Microbiol. 64 (1998) 3480-3485
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3480-3485
-
-
Schramm, A.1
de Beer, D.2
Wagner, M.3
Amann, R.4
-
44
-
-
0032953321
-
Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria
-
Stephen J.R., Chang Y.J., Macnaughton S.J., Kowalchuk G.A., Leung K.T., Flemming C.A., and White D.C. Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria. Appl. Environ. Microbiol. 65 (1999) 95-101
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 95-101
-
-
Stephen, J.R.1
Chang, Y.J.2
Macnaughton, S.J.3
Kowalchuk, G.A.4
Leung, K.T.5
Flemming, C.A.6
White, D.C.7
-
45
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acid Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
46
-
-
0030613612
-
Localization of sulfate reduction in planted and unplanted rice field soil
-
Wind T., and Conrad R. Localization of sulfate reduction in planted and unplanted rice field soil. Biogeochemistry 37 (1997) 253-278
-
(1997)
Biogeochemistry
, vol.37
, pp. 253-278
-
-
Wind, T.1
Conrad, R.2
-
47
-
-
20444456766
-
Nitrification potential of soils under liquid incubation conditions
-
Yuan F., Ran W., and Shen Q.R. Nitrification potential of soils under liquid incubation conditions. Pedosphere 15 (2005) 379-385
-
(2005)
Pedosphere
, vol.15
, pp. 379-385
-
-
Yuan, F.1
Ran, W.2
Shen, Q.R.3
|