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Volumn 23, Issue 1, 2009, Pages 134-140

In silico prediction of mitochondrial toxicity by using GA-CG-SVM approach

Author keywords

Feature selection; In silico prediction; Mitochondrial toxicity; Parameter optimization; Support vector machine

Indexed keywords

BUTACAINE; CIPROFLOXACIN; CLOFIBRIC ACID; CYHALOTHRIN; DECOQUINATE; DIAZEPAM; FLUPHENAZINE; HALOPERIDOL; HEXACHLOROPHENE; INDOMETACIN; LIDOCAINE; LINDANE; LONIDAMINE; MENADIONE; MENOCTONE; METFORMIN; METHIONINE; MYXOTHIAZOL; NALIDIXIC ACID; NICLOFOLAN; PENTAMIDINE; PHENFORMIN; PHENYTOIN; PROCAINE; SALICYLIC ACID; SULOFENUR; TIOXAPROFEN; TOLCAPONE; UNINDEXED DRUG; VALPROIC ACID;

EID: 58149291856     PISSN: 08872333     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tiv.2008.09.017     Document Type: Article
Times cited : (58)

References (41)
  • 1
    • 34547877924 scopus 로고    scopus 로고
    • Mitochondrial medicine: pharmacological targeting of mitochondria in disease
    • Armstrong J.S. Mitochondrial medicine: pharmacological targeting of mitochondria in disease. British Journal of Pharmacology 151 (2007) 1154-1165
    • (2007) British Journal of Pharmacology , vol.151 , pp. 1154-1165
    • Armstrong, J.S.1
  • 2
    • 0036174438 scopus 로고    scopus 로고
    • Assessment of mitochondrial toxicity in human cells treated with tenofovir: comparison with other nucleoside reverse transcriptase inhibitors
    • Birkus G., Hitchcock M.J.M., and Cihlar T. Assessment of mitochondrial toxicity in human cells treated with tenofovir: comparison with other nucleoside reverse transcriptase inhibitors. Antimicrobial Agents and Chemotherapy 46 (2002) 716-723
    • (2002) Antimicrobial Agents and Chemotherapy , vol.46 , pp. 716-723
    • Birkus, G.1    Hitchcock, M.J.M.2    Cihlar, T.3
  • 4
    • 4644298829 scopus 로고    scopus 로고
    • Fenofibrate impairs rat mitochondrial function by inhibition of respiratory control complex I
    • Brunmair B., Lest A., and Staniek K. Fenofibrate impairs rat mitochondrial function by inhibition of respiratory control complex I. Journal of Pharmacology and Experimental Therapeutics 311 (2004) 109-114
    • (2004) Journal of Pharmacology and Experimental Therapeutics , vol.311 , pp. 109-114
    • Brunmair, B.1    Lest, A.2    Staniek, K.3
  • 5
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges C.J.C. A tutorial on support vector machines for pattern recognition. Data Mining Knowledge Discovery 2 (1998) 127-167
    • (1998) Data Mining Knowledge Discovery , vol.2 , pp. 127-167
    • Burges, C.J.C.1
  • 6
    • 58149311347 scopus 로고    scopus 로고
    • Cerius2, version 4.10. .
    • Cerius2, version 4.10. .
  • 7
    • 58149308712 scopus 로고    scopus 로고
    • Chang, C.C., Lin, C.J., 2001. LIBSVM: A library for support vector machines. .
    • Chang, C.C., Lin, C.J., 2001. LIBSVM: A library for support vector machines. .
  • 9
    • 3042675949 scopus 로고    scopus 로고
    • Why fluorescent probes for endoplasmic reticulum are selective: an experimental and QSAR-modelling study
    • Colston J., Horobin R.W., Rashid-Doubell F., Pediani J., and Johal K.K. Why fluorescent probes for endoplasmic reticulum are selective: an experimental and QSAR-modelling study. Biotechnic and Histochemistry 78 (2003) 323-332
    • (2003) Biotechnic and Histochemistry , vol.78 , pp. 323-332
    • Colston, J.1    Horobin, R.W.2    Rashid-Doubell, F.3    Pediani, J.4    Johal, K.K.5
  • 10
    • 0036629713 scopus 로고    scopus 로고
    • Update on mitochondrial toxicity of antiretrovirals and its link to lipodystrophy
    • Comsey G.M. Update on mitochondrial toxicity of antiretrovirals and its link to lipodystrophy. Aids Reviews 4 (2002) 140-147
    • (2002) Aids Reviews , vol.4 , pp. 140-147
    • Comsey, G.M.1
  • 12
    • 0036897316 scopus 로고    scopus 로고
    • Targeting the mitochondria: an exciting new approach to myeloma therapy
    • Dalton W.S. Targeting the mitochondria: an exciting new approach to myeloma therapy. Clinical Cancer Research 8 (2002) 3643-3645
    • (2002) Clinical Cancer Research , vol.8 , pp. 3643-3645
    • Dalton, W.S.1
  • 14
    • 34548379435 scopus 로고    scopus 로고
    • The significance of mitochondrial toxicity testing in drug development
    • Dykens J.A., and Will Y. The significance of mitochondrial toxicity testing in drug development. Drug Discovery Today 12 (2007) 777-785
    • (2007) Drug Discovery Today , vol.12 , pp. 777-785
    • Dykens, J.A.1    Will, Y.2
  • 15
    • 34047154993 scopus 로고    scopus 로고
    • Strategies to reduce late-stage drug attrition due to mitochondrial toxicity
    • Dykens J.A., Marroquin L.D., and Will Y. Strategies to reduce late-stage drug attrition due to mitochondrial toxicity. Expert Review of Molecular Diagnostics 7 (2007) 161-175
    • (2007) Expert Review of Molecular Diagnostics , vol.7 , pp. 161-175
    • Dykens, J.A.1    Marroquin, L.D.2    Will, Y.3
  • 16
    • 0344235442 scopus 로고    scopus 로고
    • Fröhlich, H., Chapelle, O., 2003. Feature selection for support vector machines by means of genetic algorithms. In: Proceedings of the 15th IEEE International Conference on Tools with Artificial Intelligence, Sacramento, CA, USA, pp. 142-148.
    • Fröhlich, H., Chapelle, O., 2003. Feature selection for support vector machines by means of genetic algorithms. In: Proceedings of the 15th IEEE International Conference on Tools with Artificial Intelligence, Sacramento, CA, USA, pp. 142-148.
  • 17
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I., Weston J., Barnhill S., and Vapnik V. Gene selection for cancer classification using support vector machines. Machine Learning 46 (2002) 389-422
    • (2002) Machine Learning , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 18
    • 34547652654 scopus 로고    scopus 로고
    • Mitochondriotropics: a review of their mode of action, and their applications for drug and DNA delivery to mammalian mitochondria
    • Horobin R.W., Trapp S., and Weissig V. Mitochondriotropics: a review of their mode of action, and their applications for drug and DNA delivery to mammalian mitochondria. Journal of Controlled Release 121 (2007) 125-136
    • (2007) Journal of Controlled Release , vol.121 , pp. 125-136
    • Horobin, R.W.1    Trapp, S.2    Weissig, V.3
  • 19
    • 0008700109 scopus 로고    scopus 로고
    • Uptake, distribution and accumulation of dyes and fluorescent probes within living cells: a structure-activity modelling approach
    • Horobin R.W. Uptake, distribution and accumulation of dyes and fluorescent probes within living cells: a structure-activity modelling approach. Advanced Colour Science and Technology 4 (2001) 101-107
    • (2001) Advanced Colour Science and Technology , vol.4 , pp. 101-107
    • Horobin, R.W.1
  • 20
    • 33845423454 scopus 로고    scopus 로고
    • Fluorescent cationic probes for nuclei of living cells: why are they selective? a quantitative structure-activity relations analysis
    • Horobin R.W., Stockert J.C., and Rashid-Doubell F. Fluorescent cationic probes for nuclei of living cells: why are they selective? a quantitative structure-activity relations analysis. Histochemistry and Cell Biology 126 (2006) 165-175
    • (2006) Histochemistry and Cell Biology , vol.126 , pp. 165-175
    • Horobin, R.W.1    Stockert, J.C.2    Rashid-Doubell, F.3
  • 22
    • 33748076461 scopus 로고    scopus 로고
    • A GA-based feature selection and parameter optimization for support vector machines
    • Huang C.L., and Wang C.J. A GA-based feature selection and parameter optimization for support vector machines. Expert Systems with Applications 31 (2006) 231-240
    • (2006) Expert Systems with Applications , vol.31 , pp. 231-240
    • Huang, C.L.1    Wang, C.J.2
  • 23
    • 84864039082 scopus 로고    scopus 로고
    • Keerthi, S., Sindhwani, V., Chapelle, O., 2007. An efficient method for gradient-based adaptation of hyperparameters in SVM models. In: Schölkopf, B., Platt, J., Hofmann, T. (Eds.), Advances in Neural Information Processing Systems∼20 (NIPS∼2006), Vancouver, Canada.
    • Keerthi, S., Sindhwani, V., Chapelle, O., 2007. An efficient method for gradient-based adaptation of hyperparameters in SVM models. In: Schölkopf, B., Platt, J., Hofmann, T. (Eds.), Advances in Neural Information Processing Systems∼20 (NIPS∼2006), Vancouver, Canada.
  • 25
    • 33646420101 scopus 로고    scopus 로고
    • Statistical learning approach for predicting specific pharmacodynamic, pharmacokinetic, or toxicological properties of pharmaceutical agents
    • Li H., Yap C.W., Xue Y., Li Z.R., Ung C.Y., Han L.Y., and Chen Y.Z. Statistical learning approach for predicting specific pharmacodynamic, pharmacokinetic, or toxicological properties of pharmaceutical agents. Drug Development Research 66 (2006) 245-259
    • (2006) Drug Development Research , vol.66 , pp. 245-259
    • Li, H.1    Yap, C.W.2    Xue, Y.3    Li, Z.R.4    Ung, C.Y.5    Han, L.Y.6    Chen, Y.Z.7
  • 28
    • 0027284874 scopus 로고
    • Understanding and using genetic algorithms. Part 1. Concepts, properties and context
    • Lucasius C.B., and Kateman G. Understanding and using genetic algorithms. Part 1. Concepts, properties and context. Chemometrics and Intelligent Laboratory Systems 19 (1993) 1-33
    • (1993) Chemometrics and Intelligent Laboratory Systems , vol.19 , pp. 1-33
    • Lucasius, C.B.1    Kateman, G.2
  • 29
    • 12544259261 scopus 로고    scopus 로고
    • Hepatotoxicity of antiretrovirals: incidence, mechanisms and management
    • Nunez M., and Soriano V. Hepatotoxicity of antiretrovirals: incidence, mechanisms and management. Drug Safety 28 (2005) 53-66
    • (2005) Drug Safety , vol.28 , pp. 53-66
    • Nunez, M.1    Soriano, V.2
  • 30
    • 0025316676 scopus 로고
    • Interaction of molecular probes with living cells and tissues. Part 2. A structure-activity analysis of mitochondrial staining by cationic probes, and a discussion of the synergistic nature of image based and biochemical approaches
    • Rashid F., and Horobin R.W. Interaction of molecular probes with living cells and tissues. Part 2. A structure-activity analysis of mitochondrial staining by cationic probes, and a discussion of the synergistic nature of image based and biochemical approaches. Histochemistry 94 (1990) 303-308
    • (1990) Histochemistry , vol.94 , pp. 303-308
    • Rashid, F.1    Horobin, R.W.2
  • 32
    • 26444440003 scopus 로고    scopus 로고
    • A predictive model for the selective accumulation of chemicals in tumor cells
    • Trapp S., and Horobin R.W. A predictive model for the selective accumulation of chemicals in tumor cells. European Biophysics Journal 34 (2005) 959-966
    • (2005) European Biophysics Journal , vol.34 , pp. 959-966
    • Trapp, S.1    Horobin, R.W.2
  • 34
    • 58149286445 scopus 로고    scopus 로고
    • VCCLAB, 2005. Virtual Computational Chemistry Laboratory, .
    • VCCLAB, 2005. Virtual Computational Chemistry Laboratory, .
  • 35
    • 12844276053 scopus 로고    scopus 로고
    • Lipodystrophy associated with highly active anti-retroviral therapy for HIV infection: the adipocyte as a target of anti-retroviralinduced mitochondrial toxicity
    • Villarroya F., Domingo P., and Giralt M. Lipodystrophy associated with highly active anti-retroviral therapy for HIV infection: the adipocyte as a target of anti-retroviralinduced mitochondrial toxicity. Trends in Pharmacological Sciences 26 (2005) 88-93
    • (2005) Trends in Pharmacological Sciences , vol.26 , pp. 88-93
    • Villarroya, F.1    Domingo, P.2    Giralt, M.3
  • 37
    • 33751068050 scopus 로고    scopus 로고
    • A real-valued genetic algorithm to optimize the parameters of support vector machine for predicting bankruptcy
    • Wu C.H., Tzeng G.H., Goo Y.J., and Fang W.C. A real-valued genetic algorithm to optimize the parameters of support vector machine for predicting bankruptcy. Expert Systems with Applications 32 (2007) 397-408
    • (2007) Expert Systems with Applications , vol.32 , pp. 397-408
    • Wu, C.H.1    Tzeng, G.H.2    Goo, Y.J.3    Fang, W.C.4
  • 38
    • 0033057924 scopus 로고    scopus 로고
    • The effect of peroxisome proliferators on mitochondrial bioenergetics
    • Zhou S., and Wallace K.B. The effect of peroxisome proliferators on mitochondrial bioenergetics. Toxicological Sciences 48 (1999) 82-89
    • (1999) Toxicological Sciences , vol.48 , pp. 82-89
    • Zhou, S.1    Wallace, K.B.2
  • 39
    • 5444272497 scopus 로고    scopus 로고
    • Effect of molecular descriptor feature selection in support vector machine classification of pharmacokinetic and toxicological properties of chemical agents
    • Xue Y., Li Z.R., Yap C.W., Sun L.Z., Chen X., and Chen Y.Z. Effect of molecular descriptor feature selection in support vector machine classification of pharmacokinetic and toxicological properties of chemical agents. Journal of Chemical Information and Computer Sciences 44 (2004) 1630-1638
    • (2004) Journal of Chemical Information and Computer Sciences , vol.44 , pp. 1630-1638
    • Xue, Y.1    Li, Z.R.2    Yap, C.W.3    Sun, L.Z.4    Chen, X.5    Chen, Y.Z.6
  • 40
    • 0032028297 scopus 로고    scopus 로고
    • Feature subset selection using a genetic algorithm
    • Yang J., and Honavar V. Feature subset selection using a genetic algorithm. IEEE Intelligent Systems 13 (1998) 44-49
    • (1998) IEEE Intelligent Systems , vol.13 , pp. 44-49
    • Yang, J.1    Honavar, V.2
  • 41
    • 67349139293 scopus 로고    scopus 로고
    • Yang, S.Y., Huang, Q., Li, L.L., Ma, C.Y., Zhang, H., Bai, R., Teng, Q.Z., Xiang, M.L., Wei, Y.Q., 2008. An integrated scheme for dealing with feature selection and parameters optimization simultaneously in SVM modeling and its application to predicting ADMET properties of drugs. Artificial Intelligence in Medicine, doi: 10.1016/j.artmed.2008.07.001.
    • Yang, S.Y., Huang, Q., Li, L.L., Ma, C.Y., Zhang, H., Bai, R., Teng, Q.Z., Xiang, M.L., Wei, Y.Q., 2008. An integrated scheme for dealing with feature selection and parameters optimization simultaneously in SVM modeling and its application to predicting ADMET properties of drugs. Artificial Intelligence in Medicine, doi: 10.1016/j.artmed.2008.07.001.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.